Array 1 2543182-2540832 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCTJ03000009.1 Ralstonia solanacearum strain UW700 9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2543181 29 100.0 32 ............................. GTGCCGGCAGGGACGACGATCGTTACGTTGCC 2543120 29 100.0 32 ............................. TAGCAGTCTCCTGACCCTCCAGCTTCGGGATC 2543059 29 100.0 32 ............................. CGTCGTGCTACCGCCGGATGAGATCGATACAG 2542998 29 100.0 32 ............................. TTTTGTACTCAGATGCGCGTGTACCCGGACTC 2542937 29 100.0 32 ............................. GCTATGTCATGTGAGCCGCCGTGCTTGACTAC 2542876 29 100.0 32 ............................. CCATGACATTTTAATGCTCCTTTTGAATGCGC 2542815 29 100.0 32 ............................. CATTGTTTTTCCCCTTTCGATAAAAATAAACG 2542754 29 100.0 32 ............................. TTGAAGTACAGCGAGCCGCCGCCGAACTTTCC 2542693 29 100.0 32 ............................. GACGCATTGACCGTTGATGAAATGCTGTGGAA 2542632 29 100.0 33 ............................. CAGGGCCTGGTGTACTCGCTGGTCGAGAACCAG 2542570 29 100.0 33 ............................. CTGTGGATGCTGACGGGCGCGCCGTGTCCCAAC 2542508 29 100.0 32 ............................. AAATCGGCCTGCCCAAACCGATGGTGGTGGAC 2542447 29 100.0 32 ............................. GCGCTACCCGACAGGCCAGGATCATAGCCCGC 2542386 29 100.0 32 ............................. TACGGACCGCGCAGCTCCTGTGATGGAAGCTG 2542325 29 100.0 32 ............................. ATGACGGCGGACATGATAACCAACTGGCTGAT 2542264 29 100.0 32 ............................. GCCAATACCGAAACGGAGCGGCCTAATGTCCA 2542203 29 100.0 32 ............................. CCAGTTGCGCGACGTTGGGCTCCTTGTTCACC 2542142 29 100.0 32 ............................. CCACGTTTCGTCTGAATACGAAAAATTGGGCG 2542081 29 100.0 32 ............................. TGGAATAGATGATTTTAGCCGTTGCCTGTGTG 2542020 29 100.0 32 ............................. AAATATTCCAATGCTTGTTTCAGAGTGCTCGC 2541959 29 100.0 32 ............................. GCGAATTTTCCAGCGTATGGGCCGGCGGCATT 2541898 29 100.0 32 ............................. CTGTGATCGTGGACGCACGACTGCTCGTGGTT 2541837 29 100.0 32 ............................. TCGAGCAATTGTTCAGTGCAATTGTCGCCCCA 2541776 29 100.0 32 ............................. TCGACTATGGCCCCGACCTCGCGCATGGTGGT 2541715 29 100.0 32 ............................. CTGGGTGTCCGCAGAAAGTACATTTGACTATT 2541654 29 100.0 32 ............................. TGGTTGTCATGGAATCGGAACGCAAACATTTC 2541593 29 100.0 32 ............................. ATGAAACAGTGAAAGGGAAGGGCAAACGCCCC 2541532 29 100.0 32 ............................. TGGGGGTTGGTCTTGTCCTTGACTGCGTTTTC 2541471 29 100.0 32 ............................. CACACGTTGGGCACGCACCTGAGCATCCCATT 2541410 29 100.0 32 ............................. GCCATTCATGCCCGGATGGCGGGATAAGAATC 2541349 29 100.0 32 ............................. TTCGGCATGCTGGCTGTAGCCAAGCTCGCAGC 2541288 29 100.0 32 ............................. GCGCGTTTCTGGAATGGATCAACTCTGATTCC 2541227 29 100.0 32 ............................. ACAGACGTGGGCGGCGGTCAAAGCGCCCTGCA 2541166 29 100.0 32 ............................. ACCGCCTAGGCCTTCTTGGGCAGGCGGAGCAC 2541105 29 100.0 32 ............................. TCGTCCGGATTTTGAGCGAACTTTCCATACGC 2541044 29 100.0 32 ............................. GCCTAACCATGTAATCGCGACGGGATAGGTGC 2540983 29 100.0 32 ............................. AAGCGGTATTCGGTCGAAGGCCCGGTGGAATT 2540922 29 86.2 32 ............TGC..A........... GCCACCAAGACGGCGAGTGAGGATATGCGAAT 2540861 29 86.2 0 ...........AT...........TG... | G [2540840] ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.3 32 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : TCGCATCATCCCGGCCATCGAGGAGGCGCTTGCGGCGGGCGGGATCTCGCCCCCGGACGCACCCCCGGAATCTGTGCCGCCCGCCATTCCCAATGCCGAGGGCCTTGGCGACGTTGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGTTGCTGGAGGTCCGCGCCGGCGTATACATCGGCGATGTCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCATCATGGCCTGGGCCAGCCCGCACGAATCGGGCTACGAATTCCAGACACTGGGCGCCAACCGCCGCCTTCCAGTCGAATTCGACGGACTGCAGCTCGTGGCCTTTCAGCCGGCGGATAAACCTGCTCTTTGACAACGCGAATAATCGGTACGTTTTGGGTGGCGGGATTTTTGGTTATTAATCAATGGGTTGTGTTAAGT # Right flank : CCAGTGGCCAGGCAGCCGATGTCACGACCCGGATGCCGCTACACGCTAGTGCCGGCTTGACCGCGCCTTTTAGCCGTTCCTGCACAGAGGCAAGGACACAGCGCGTCCGGGCCGCTGGCTGCGACGCGACATCGCCGCTGGGCTGGATCAGGCCGCCAGCGCGGCACGCGCAGCGGCAATCGCCAGCTTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGATGCCACCGAGCCCTCCAGCGTCAGCACGGCGTGCACGTCGTCGCTGATCAGGTCCGCCTTGTCGCCCAGGCCGCTGATCTCGCGCAGTTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2553853-2552604 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCTJ03000009.1 Ralstonia solanacearum strain UW700 9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2553852 29 100.0 32 ............................. CCAGGGAAGCCCGTGTTTTCGATGAACGTCAA 2553791 29 100.0 32 ............................. GCAAAAAAATCGTTGTGGAGGTCGCCGAAGGT 2553730 29 100.0 32 ............................. TAGATCTCGTCGTCGCCGGCCACGAAGCCGAA 2553669 29 100.0 32 ............................. CCGGCCAAGCCAGTCGATGTGCCGCCGACGCT 2553608 29 100.0 32 ............................. CTAGTTGAGGTTGTGCCGCGCTCCGCCGCCTT 2553547 29 100.0 32 ............................. GTCGATCATGGTGGGTCTCCTGGTAGCCCGTC 2553486 29 100.0 32 ............................. CGCAGCCTCGGCCTCGCGCTTTGAGGTGCATT 2553425 29 100.0 32 ............................. TTGAAAAAGAAAGGGCTTCTCTCCAAGAAATA 2553364 29 100.0 32 ............................. TGCGGTCCCACCGATCGTCAGTTTATCTCCGA 2553303 29 100.0 32 ............................. CACGGGCCGAAGTGCGTTCCGATCTTTCTGGA 2553242 29 100.0 32 ............................. CGCGCGCAACGTATGGCGAACATGACACCACC 2553181 29 100.0 32 ............................. ACCCTCCAGTTTGGTCACAACTACAGTAAGAA 2553120 29 100.0 32 ............................. TAGAATGGCCTGAACTTCTCATCAAACTCAGA 2553059 29 100.0 32 ............................. ATGTAGGGATGTTTGTGGTAGATGGTCATATC 2552998 29 100.0 32 ............................. AATCGCCACGCCGACAATCGCAGTTGCAACCG 2552937 29 100.0 32 ............................. CTGCTGGCAGAGCAGCGCGGGCTGGCGGATAA 2552876 29 100.0 32 ............................. GACGCGGCAGACGCCGCTGGGGAGCGAACATG 2552815 29 100.0 32 ............................. CCACCCCGGTGTAGGGGGTAACGTATGAAACC 2552754 29 100.0 32 ............................. AACGCGGGTCCAAAGGAATGCAATGGCAATGA 2552693 29 100.0 32 ............................. CAGGTGTGGGCTCTGAAAATCAAGGACGTCGC 2552632 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 100.0 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAGTACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGGTATTCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCGTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACGATCGTGCAGTACCTGCAGTTCGCACGCGACTTCAACAAGCTGTTCCCGGGCTTCGAAACCGATATCCACGGGCTGGTCGAGGAGGAGATCGACGGTAAGGTGGGGTACTTCGTCGACTGCGTGCGGTAAGGCATTGCCGCGAGCTTTTGCCCGGCGGTAGATCGGTAGATTTTTGAGGGCCGATTTTTTGCTTTTGGATCAAGGGCTTGCGGTAAGT # Right flank : CTGCATCAACAGCTCACCGCTGATCGTGCCGCGACCCCCGCATGTGCGGAATAAGCCTTCAGTCAGCCCCAGTTCCTCGATCATCTGTAGGAAGATGAAGAAAGCCACGGATTAATGCCTTCCACTATCTCATTTGGATAGTCTTTATATTTGCTGAAGCTGTCAGGAAAATCCAAAATAAATGTCCACCGGGCTGTTACGATCGCCCGTCGGGGAGCAGGCACAGATAGACATTTCCTGACATCAAGAAAAGGCATCCGGCTGACATGGAAAAAGGGGCGGCGCAATACTTTGCCTATTGGGGCAAGGCACGCATGCAGGAAGGTAGCAGTCAGCTTTATCACCTTCTTGTCTTTCATGCCTTGGATGTCGCAGCTTGCGGCGCGGAGTTGCTGCGCCTGCCCCGGTTTTCTCTTGCGCCCCTGGCTGCGGAACTCGGTTGGCCATTGCGGGTTGTCGAAAAGATATTCATCTGGTTTCTGGCGCTGCACGATCTTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //