Array 1 5943874-5941652 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQMQ01000005.1 Streptacidiphilus oryzae TH49 BS73DRAFT_unitig_14_quiver.5_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5943873 29 100.0 32 ............................. GAGTGGGCGTGATTGTGCAGCAGGAAGAGCGG 5943812 29 100.0 32 ............................. CGCGTCACCCTGCTCTACCGGCCGCACAGCGC 5943751 29 100.0 32 ............................. TCCTGTTCCTGGCGTGCGGCCAGGTCCAGCAG 5943690 29 100.0 32 ............................. TTCTCCGGCAACGGCTTGGTATGGCTTTCCTT 5943629 29 100.0 32 ............................. ATCGGTAAACCGGCCTCGTAGGCGCCTGTCTG 5943568 29 100.0 32 ............................. GCCGCCGCCGAGCAGCAGGTTGCCGAGGCCCA 5943507 29 96.6 32 .................A........... TTCCGGCGCCGTACCTCGCAGGAGCACGGTCC 5943446 29 100.0 32 ............................. TTCCGGCGCCGTACCTCGCAGGAGCACGGTCC 5943385 29 100.0 32 ............................. CGCCGAGATCGCGACCCTGATGGATCGCGACC 5943324 29 100.0 32 ............................. GCGGAGCGGTCCGCCATCCGCGCGGATGAGCA 5943263 29 100.0 32 ............................. CGTACGTTGCCCCTCGGAGCCGGCTCGACCGT 5943202 29 100.0 32 ............................. CCAGCCGCGACATGCTGCGCGCCACGCTGAGG 5943141 29 100.0 32 ............................. ATCTTCCGAGTGTTGGCGAGCTGGCCTTGGTG 5943080 29 100.0 32 ............................. GTCGCCCTCACGGACGAGCAGCGGGCCGCGGT 5943019 29 100.0 32 ............................. TCCACGCACTGCTCCTCGGTGGGGAAGTCCTC 5942958 29 96.6 32 ........T.................... CAGCCCGAGGCCAAGGGCGTTGCCGTCGTCAT 5942897 29 100.0 32 ............................. TGTCGGCGCCCAGCTTGGAGAGCGCGTTGTGC 5942836 29 100.0 32 ............................. GACCCGATGGAGGACGGCCCCGCGCGGCCCTC 5942775 29 100.0 32 ............................. GTAGCAGCGGAAATAGGCAGGGGCGGGTGGTG 5942714 29 100.0 32 ............................. GCCACGTGTGCGCACAAGCCGTACAGGGTGAC 5942653 29 100.0 32 ............................. ATGGTCAGCGGCTCGTGCTCGTCGCCGGTCCA 5942592 29 100.0 32 ............................. ATCTGCTGGCCGCGCCAACGCCAGCACATCGC 5942531 29 100.0 32 ............................. GTGAGCGCGTCATCACCGCGCATCGCTGCCAT 5942470 29 100.0 32 ............................. TCCGGCGGGGTGCTGCCCGGCTCGGTGTCGAC 5942409 29 100.0 32 ............................. GCGTGCAGGTCACGACTGGCCACCTTGCCCAG 5942348 29 100.0 32 ............................. TTCAACAGCAAGGCGTTCGGCTCGTTGAACAT 5942287 29 100.0 32 ............................. GAGGCGAAGCGCCGCCGCGAGGCGCCGATGCC 5942226 29 100.0 32 ............................. TGACCGGGCCCGAACCGGCGATGCCGGTCCTC 5942165 29 100.0 32 ............................. CTCGACGCCGCCGCGGCCGCCGAGCGCATCCG 5942104 29 96.6 32 ...........G................. ATCACGCAGATGTCGATCGCCATCCGCCGCAC 5942043 29 100.0 32 ............................. GACATGTGGGCCTGATTACCGGCGGAGCCCGC 5941982 28 89.7 27 ................-.......A..G. GGTTCGATTCCTCGTGGGGGTACTGCT CC [5941959] 5941925 29 100.0 32 ............................. CCGCAGGAGCGCGAGGCCTTCCTCGCCGCGTG 5941864 29 96.6 32 .......T..................... GCCTCAGTGGCGTTCCTGTGCGCGGCCGGCTG 5941803 29 89.7 32 ..A...............A.........C GAGGCCCTGAAGTTCCTCCACCTGATCGCGAT 5941742 29 100.0 32 ............................. GAATCCGAGGGAGCGGTACACCTCTTGCACTC 5941681 29 86.2 0 .....T......AG..........A.... | G [5941659] ========== ====== ====== ====== ============================= ================================ ================== 37 29 98.7 32 GTGCTCCCCGCCGACGCGGGGGTGGTCCG # Left flank : GTGCTTGGGCACGACCTGCGGGGTGAAGCTGCCGGCCCGATCGCGCGGCACGTCCAACTCGACCTCGCCGATGTCGGTGCGGACCGTCTTGCGGTAGCTGCCGTTGCGGCTGTTGGACTTCTCCGCCGGGCCGGCCTCGCCGCGCGCGTAGCCCAGGTGGTCGGTCATCTCCGCTTCCAGCGCGCCCTCCAGGATCAGCTTGACCAGGCCCTTGAGCAGCCCGTCCTGGCCGGTCAGGCTCACCCCCTGGCTCCGGGCCCGCTCCACCAGCCGCTGTGCCATCTCCCGGTCCAGCTCGGCCTGTTGTGCCAACTCCGCCCCCGTCTGCACACTCGCCTTCGCGTTCGCGGAAGACTCGTCCCTGGTACCCATCTGTGATCCTTCCCGGCAGAGCACCCAGCTCATGCCAACTCAGGTCACACCAGGCGAAACACAATCCTCAGGACAGGCCCACGCGGGGGTGGTCCGAGGAGGTAGGCGACGAAGAGGAGCGCCAGGAG # Right flank : CTCTGCCGTTCAGCCTGTCGAGGGATGGCAGACTGCGCTCGGCAGCATACGGGTGGGACCCCGGTTATCGAAATCGGCGATCCGCCGGATACTTGGGCCTCCACCGCCACTCCATGACCGCATCGCCGAAGGGCAGCGCCTCTACGACGCCCAAGTCTTCCGTCTCGAAAACCTCGCCGCTCCGGCCGCCGGGCACGCGTCATGCTGCGGCATAGGCGAGACGGAACAGGTCATGGGCGCGCTCCAGGTCCCGCTCGGTGCGCAGTTGGACCTCCAGGTCACCGGTCCCGTGGTGGCCCAGGCCCCTCATGTCCCGGGTGAAGCCGGGGACGAGGTCGACCCGCGCCGGATCGAGGCGCAGGTAGATCAGCAGCTTGGTCTGCTGCGGCCGCAGCACGCAGGCGAAGTTCCGCAGCCGCCGGTAGGCCGCGTACTGCCGGCGTTGCACCCTTGCCACCCCCTCTCCCACGCCCAGGAGGGCCCCATCCAGCGCCGAGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCGACGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCGACGCGGGGGTGTTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //