Array 1 4787-3563 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJNI01000006.1 Listeria monocytogenes strain BCW_3910 PROKKA_contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4786 36 100.0 30 .................................... TGGAAAGCTCTGCAATCTAAAACACTCAAT 4720 36 100.0 30 .................................... GTGAAGCTAGATGACGGTTTCAAAGCACCG 4654 36 100.0 30 .................................... TATGCTTCTAATAAACTGTTTGCTAGGGTG 4588 36 100.0 30 .................................... GGGGATTCAGATTTTAATGGCATTAATCGA 4522 36 100.0 30 .................................... ATTTGTCCATATCGAGCTTACTTTGCAGAG 4456 36 100.0 30 .................................... TGTTTTTGAAAGTGAGACAATTGAAAGTAT 4390 36 100.0 30 .................................... AAACAGCGTTGAGATTCGACACAGTCAAAG 4324 36 100.0 30 .................................... ATGTTGCTAAAAACGCATTTAAACAGTTTG 4258 36 100.0 30 .................................... ATAAGTTTTAAAAAAGAAAACGGAAAATAC 4192 36 100.0 30 .................................... TTTTTACACCTGCAAACGCACTTTCGAAAT 4126 36 100.0 30 .................................... ATTCTTTTTGCTCCATTTCATCAATTACAT 4060 36 100.0 30 .................................... AATATTTTTCATTAGAAGAAGATGTAAAAG 3994 36 100.0 30 .................................... AGGTTTAGCACCAACTTTGACGACGATGCA 3928 36 100.0 30 .................................... TCGAAAACGATTACTACTATACTCGGTTAT 3862 36 100.0 30 .................................... CCATTAGCAATTCTTTTGAATACACCGCGC 3796 36 100.0 30 .................................... ATGTGTTGAAGGCTGGAGAACATTTCAAGA 3730 36 100.0 30 .................................... ATGAACGAATATCAAAAAAATAAGGAGATT 3664 36 100.0 30 .................................... AAATAGAGTTTTCTACCAAATGAGTCACTT 3598 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGACAAATTAACCGCAACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCATATTTGAGAAATTAATTGAAATAGTACAAGTTTATAAATATCTATCTAAGAAAAAATTGTTAGTACTTATTAATGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGGAGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAGCCTAGAAAGATAAAAGGATCTCCACATGTTACTTTAGATTCTGATTATTTTTTACACATGGAAAGTAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAACCCATAAAAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTCGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATAGAGAATTTAACTATCGAAAATCTAATTTTAAGTGACTGAGAACTATTAATAACTAAAAATGAGAACCTATATAACTTTTAGCACCATCCGTTAAAAAAGGAACCCCCAACCATGAAAAAAACCTCCATTATTTTTATTTTTTGCGCATTCCTGTTAACTGCTTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCATAGAAGCTACCGACACTATTGAACAAGTAGAAATGGAATCTGTTTTAATCAATAATATCAAAATAAAAACCGATAATAACGCGCCAGAACTGAGTGTGCGCTTCTACATCAGTGGAAAGTACCACGACGAAACGGGAAACAAAATAAAACTAACCGAACTAAACAAAAATGACAATATAAAAATCATTTTAACAAAAGATTTCCCAATCCAAGAAACCTCACCAACCCAAATAGATCCCAAATACGTACATAAAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //