Array 1 1214472-1216951 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023737.1 Methylosinus trichosporium OB3b chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1214472 37 100.0 36 ..................................... CAGCTGCATCACGAGATCCTCGAGCCCGTAGGCGAG 1214545 37 100.0 36 ..................................... CCACTGGGTCTTGCCGTAGGTCGTTCCTTCTTCGAC 1214618 37 100.0 38 ..................................... TCCGCGACGGTCGCCAATGTCTCCCGCGGCACCGGGGA 1214693 37 100.0 37 ..................................... CTCTCGATGCGGAAGCCGCCGCCGTCGCAGCCGCCGC 1214767 37 100.0 38 ..................................... TATGGCCGAGCGGATCGGCCTCGGGCTCAGAGCCTATC 1214842 37 100.0 37 ..................................... GGCGGTGAAGCAGGAACTTGGGCTAACATCGCCCGAG 1214916 37 100.0 39 ..................................... GTTCAGTGCGATGAGATTTGGTCATTCACCTACGCCAAG 1214992 37 100.0 36 ..................................... AACGTCCGTCCGGCCCGCGCGAGCTTACGCCTCGTG 1215065 37 100.0 39 ..................................... CTCGGTTGCGCTATGCGTAATCGCATGGCGGCCCATCGT 1215141 37 100.0 37 ..................................... CATTCAACTCGGCGATGGCATGAGAAAGCTGCGCGTC 1215215 37 100.0 38 ..................................... GACGCGACGAACCTGAAAGCGACGTCTGCGGACCCTGC 1215290 37 100.0 34 ..................................... TTGCTGCGACTGGCACGGGCAATCGGGTGATGAC 1215361 37 100.0 38 ..................................... AACGACTACGGGGTCGAGCTGTTCGATCCGAAGATCGA 1215436 37 100.0 35 ..................................... GCCGTCCGCGGCAAGACCGCAGATATCCCCGTGAC 1215508 37 100.0 36 ..................................... GAGCGACGATCTGCGCTGCGAAGCCGTCTATGAGCT 1215581 37 100.0 39 ..................................... CGACGAGGGTGCGGATGCATGGGCACGATCCGAGGGCGT 1215657 37 100.0 37 ..................................... CTGTCGGCGAGATGATGATCATCACGAAGAACAGCCA 1215731 37 100.0 38 ..................................... GGGAATCGACTTCTCAAAGATACCGTCCTTGGCCGCCT 1215806 37 100.0 35 ..................................... CGCCGAAGAGGTTGGTATCGGAGAGCAGTTCGTCA 1215878 37 100.0 39 ..................................... TTGCCGCCGAGGCGCATGCGGCCCCAGAGCTTACGGATC 1215954 37 100.0 35 ..................................... CAGTCGCTACATCGCGTGCCTATTATCCCTCCATC 1216026 37 100.0 35 ..................................... GCGACAGGAACGACCGCGACATTGCTCCTGGGGAT 1216098 37 100.0 38 ..................................... CCCGGCGAGAAGGTCAACCCGATCGATCCGTCGCGCCC 1216173 37 100.0 39 ..................................... CCGAGTATAGCTTCTTATGAGAGACACAAGCGTAAACAC 1216249 37 100.0 38 ..................................... CTTGCGTGCGGGTTCCTGATGCGGACATCTTCGATGAA 1216324 37 100.0 36 ..................................... GCGGCGTGGGGTCCGAATCGTCCGCCGCCGTCTCGG 1216397 37 100.0 36 ..................................... ATCGAGCGCCGGGGCACCAAATCGCAGGCTTACCAC 1216470 37 100.0 36 ..................................... ATATAAGATCGTGGAGCGGAAGGGCTCTCTCTACCC 1216543 37 100.0 39 ..................................... CTCGGCGGCGTCGATCGGCGCGGTGATGGCGATCTCCGC 1216619 37 100.0 38 ..................................... GCATTGTCCCGCATCTCCAAACGCAAGAGACTTGTTGT 1216694 37 100.0 35 ..................................... TCGGCGACCCGACGGATGGATATAAGGGATTCTAT 1216766 37 100.0 38 ..................................... ATCATGTTTTACGGGATGATTCACGGCACGTTCACCGG 1216841 37 100.0 37 ..................................... TATGCAGGCACCGCGCGATCCGCAGGCTCACCTGCGG 1216915 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 34 37 100.0 37 GCTTCAATGAGGTCCGGGCGGTGAAGCCCGGAAATAC # Left flank : CGCAGAGGCGAGACATTGCATACCGGCCGAGCGCCAGAAAGCCGCCTTCGAGGGCCGCTGGCGCATCCCTTGGGTATTGGCCGATGTGGTCTCGCTCGCTCGGCCGGTCCCCTATGTTCATCCGCGAGGAGCGGTGACATGGGTCGTGCTCGCGGACGACGTCGCCGCGACGATCGCCGATGCGCTCTCTGCGCCATAGCGTTGGGCCGGGGCGGCGCGAGGCGCCGGGAGCAGGAGCCGCCCGCGCTCCGAGCACAGGCGCGACCCCCGTGAGGAATCGAGCAGTTTTCTAAGACATCCATACCTCGGCGTGGCTACGAAAACCGCGGCGGCGGCGCCAGGCCGGCTCCCCTTATTGGGCTTTCGCAGCACCGACGCCCGTGTGACGGACGCTCTTGTGCTTCCGAACATTCCGTCCCGAAGCCCAGCCTCTGCGCTGTGGCGACGCTTGCTTCGTCGAGGCGGAGAATCATGGCCGAACGCGCCGCCGCTGTGGCGGG # Right flank : CCGCCTGCTCGCAGCCGGCGGATTCGAAAGCCCGAAGACCTTCGTTTGCGAGCGGTGGATCGCCGCCGCTCGTCCGCCGTCGCCAGAGCGTCGGCCCGAGGTGCTCACGATGACAAACAGCCTTGCAAAAACAACCAATTGCGACAAGCGCGAGCGCTCCCCGGCGAATCCGCCCCGTCGGAGCGCTCGCGCGCCTTCGGCAGCTTAGCGTGAACCGGGTCAGATGACTATCGCCCGTCGCTCGATCGGCGCGAAGGTCTTGCCGAGGCTCTCCACGGCGAAATCGACATCCTCCGCCGGGCCGAGATCCATGATCAATATGTGATCCTCACGAGGATCGATCAGCGTCTCCAGCGTCATCGCCATCTGCGCGCGTCGCGACCCGTCGAGCCGGCAATGGAAGACGGAGAGCTGCACCCAGCGGCCATAGCCGTTCATCGTCTTGAACACGCGGCGCCAGCGCTTCTGATCGCCGATGTCATAGGCGACGATGTAGGAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGTCCGGGCGGTGAAGCCCGGAAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.10,-14.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 2 1640581-1642134 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023737.1 Methylosinus trichosporium OB3b chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1640581 36 97.2 30 ..G................................. GCAGCATCGGCGCCGTCGCCCAGCAGAACA 1640647 36 100.0 30 .................................... CGCGGCGACGACGCCGATCGGATCGGACGC 1640713 36 100.0 30 .................................... CCGGCTCCCGCTTCCAATAGTTTCGCCCGA 1640779 36 100.0 30 .................................... GGCCCTATGCTGCGCATGAGCTACGACAAA 1640845 36 100.0 30 .................................... TTCGCCGAGCTCGATCACGCGCGGCATCGC 1640911 36 100.0 30 .................................... CATAGATGAGCCGCATTCGCGCATCCGAGG 1640977 36 100.0 30 .................................... TGGGTTCGCCCGGAAGTGAGAGGATGATGA 1641043 36 100.0 30 .................................... CCGACCGTCTGCGCATCGGGGAAGAACGAC 1641109 36 100.0 30 .................................... GGCGGCGCACGCTGATCATGGAGACGATGG 1641175 36 100.0 30 .................................... GATCCGCACGCATATTCGCGACCACATCGC 1641241 36 100.0 30 .................................... TTTACGACATGACGGCACCGGCGCCGGCGT 1641307 36 100.0 30 .................................... TCTGGCGGGCTCGACAAGTCGGCGGGACCG 1641373 36 100.0 30 .................................... GCGTGCCGCCGGCGCGCTTAGGCACGGCGC 1641439 36 100.0 30 .................................... TGCAAGCGGCGCTGCGTCCCGCTTTCCTTA 1641505 36 100.0 30 .................................... CTCGGCGCGCGCGAGTGTGAGAGGGCGCGG 1641571 36 100.0 30 .................................... GGCTGCTTTCTCAGGTCATTTGCAATTCGG 1641637 36 100.0 30 .................................... CTATCTTGCTCGTGCCAGTTCGCGCCAGCG 1641703 36 100.0 30 .................................... GCATGGATCGTGACGCACCCAGAGGCGCGC 1641769 36 100.0 30 .................................... GTCGAGTTCTTCGATCAGCTCAATTTCCCA 1641835 36 100.0 30 .................................... TACAGCAGCTCGTTCGCGGCGGCGTCTGCG 1641901 36 100.0 30 .................................... TCGCCACGGCCTTCGCCGCCGGCTCGATCG 1641967 36 100.0 30 .................................... CGTCACCGCCAACGCGTGAGCATCACATGA 1642033 36 100.0 30 .................................... TAATCGAATGAAACCAGCTCCCGACGAATG 1642099 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.9 30 GCCGTGGCTTCCCTGCCGATTTCCCTGTGGTAGGCT # Left flank : TGAAATCCTACGATCTCGTGTGGCTGCTGCATCTGGTGGGCGACGTCCACCAGCCGCTGCACGCGACCTCGCGCTTTTCCCGGGGCCTGCCCAACGGCGATCGAGGCGGCAACACGGAAACCGTCTGCCTCGCCTTCACCTGCGGCGCGAAGCTGCACGCCTATTGGGACGGGCTGCTCGGCGATCGGGGAAGCCCGTCGGACGCCGAGGCGCTCGCGGCCACCCTGCCCTCGCCCGATGCGACGGCGGCGGCGGTCGACGATCCCGCGACCTGGGTGAAAGAGAGCGAGCGGCTTGCGGAGCAGTTCGTCTATGCCGGGCCAATCGGAGATGGCGCGGGGCCTTTCGCGCTCACGGACGCCTATCAGGCGGATGCGAAGAGGGTCGCGGAACAGCAGGTGGCGCTTGCGGGGGCGAGGCTTTCGCAACTGCTCGACAGGGCGCTTCGGTAAGCTAACTTCCCTGCCGATTTCTGTGGTAGGCTCGCGAACGACATTGCT # Right flank : TCGCTTTGACGTAACGAAATGAAAAATCTGTGATTTTCGTTCTCTTGCCGGGACTAAAATCACAATAATACCAGTTGTTGCGGTGCTATCTTTTCATTTTTCGGCGATTCGCCGATCAGGAGTTTCATGCGCGCGTATTGCCGCTCGGTGACGCTTAATGTGCGTACGCTGCCTTTCGGCGGGAGGTTCTTAGTGACCCTAACGAGATGCTTTTCCACAGCTTCTTCCCCGCGCATCACGCGCGCGTAGACTGACAGTTGCAGCATTAAAAAGCCATCGTCCTTGAGAAAATTTCGAAAACGCGTAGCATTGCGCCGTTCGACTTTCGTCTTGACCGGTAGATCGAAGAAAACGAAGAGCCACATATAACGCACCTCCTCGGCTTTCATGGGGAACTCCCCTTCGGCGTGACGAAGAACGGGAGTTTTAGAATCGCCGCGCTTCCACTCTCCATTGCCTGAACGAGGCCTTCTGCGGCCTTCTCGCTCGCGACGAGAAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTGGCTTCCCTGCCGATTTCCCTGTGGTAGGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,11] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCGTGGCTTCCCTGCCGATTTCCCTGTGGTAGGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.80,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //