Array 1 2247-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVFS01000015.1 Rothia mucilaginosa strain 473_RMUC 331_64938_741139_71+,...,188_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2246 29 100.0 32 ............................. ACGACCGTTGCAATCTTGGACCCGACCGCTGA 2185 29 100.0 32 ............................. GAGGCGAGGGTGGTTAGGGACCCTCTTCCGGT 2124 29 100.0 32 ............................. GACAAACGCAATTGTTCTAGGTTCCTTGGGTC 2063 29 100.0 32 ............................. AGCGGAGCTAATCGCATCAATCGCGTCCTTAG 2002 29 100.0 32 ............................. AGGGCGTTAGGCTTCTCACGTCGCCGGTAGAA 1941 29 100.0 32 ............................. ATTACGCCGCCGTTAGTGGCGTACCCGCCCGG 1880 29 100.0 32 ............................. GCCCTAAAACCGCCCGAGACCTCATCGAGAAT 1819 29 96.6 32 ............................T TGGCTCCGCGATAATATTGTGGTTCCGGTGTG 1758 29 100.0 32 ............................. TCCAGCGGCACCTCTGCACCGTAACGCTCTTC 1697 29 100.0 32 ............................. GAGATAAAGGGCGCAATGGAGCACCGAATCAG 1636 29 100.0 32 ............................. AGCAGCGGGTAGTGGGCGTTATCCTGCTGGTC 1575 29 100.0 32 ............................. CACGGCCCACATTATCAAGAGTGGGCTTTAGC 1514 29 100.0 32 ............................. ATGTCGCCGACAATCTTCACGCCGTCATTAAA 1453 29 100.0 32 ............................. ACTGTTACGGACATTATCGGTTCCGTTTTCCG 1392 29 100.0 32 ............................. AAGTCCACTCATTAGCCACGAAGTAGCTAACC 1331 29 96.6 32 ............................A GCAACTGATTACGCAGGCGCTTCTTTTTGACC 1270 29 100.0 32 ............................. CTTTCGCATGATGCGAGTGACGATAAGATTAA 1209 29 100.0 32 ............................. CACATATTCGCGCTGAGTACCGACGGACGGTA 1148 29 100.0 32 ............................. CGCGCATTGAGAAATGTCATCGCCGCCGGTAT 1087 29 100.0 32 ............................. CATGGCATGACCTTGATGGAGCGCCTCTCTGA 1026 29 100.0 32 ............................. CAGCGCGTGCGTACTTGCCGGTGGGTAGAATC 965 29 100.0 32 ............................. GAGGAGTGAGAGGATGAGTCCGAAGATGAAGA 904 29 100.0 32 ............................. TCGACCAATGGCCAGGCTATCCCGGGCGTGGA 843 29 100.0 32 ............................. GTGAACCGCCAGGCCGCGAATATTATCCGCCT 782 29 100.0 32 ............................. GGTATTCTCGATTTTATTGTGAATACCATCAC 721 29 100.0 32 ............................. GCCGTCTTGCGCCACATGGCCGCCTCATGCTG 660 29 100.0 32 ............................. GCGCTCGAACCTGGTGTGACATCCCTCACTAA 599 29 100.0 32 ............................. CGGCGACGCCAGGCACCGGCGAAGCGGCCGCG 538 29 100.0 32 ............................. AAGACTGTCTCGCTGTGGACGAGTCGCGGCGG 477 29 100.0 32 ............................. GGGTGCAACGCCCTAGAAATCAGCCTAACCGG 416 29 100.0 32 ............................. TGTCAGAGAACACAATGAATTATAGGGGTTTT 355 29 100.0 32 ............................. AGCTGAAGCGCCGTGGTGTTTCGCTTCCTTCT 294 29 100.0 32 ............................. AACTCTTGACTCAACACAACCTGGGATTTCTT 233 29 100.0 32 ............................. GACCCGAACTCATGCATGAGATTTTTGATGAG 172 29 100.0 32 ............................. GACGGTCTCATCTCCCGAGCCGAGCTGAAGCA 111 29 100.0 32 ............................. CGGCAGCCATGCGCGGAAGATAGGTGCCGCCG 50 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.8 32 ATGTTCCCCGCGCGAGCGGGGATGAGCCG # Left flank : AGATGCTTTTGTGGGATGAATACACGGGAGGCACTGCGGCGCGTGCGAACTTTTCTGGGGATGAGTCATGATTGTGATTGTGTTGTCCGCTTGTCCGGTAAGTCTTCGTGGTGATTTGACGAAGTGGCTTTTGGAGATTAATCCTGGGGTGTTTGTGGGACGTGTGAGTGCCAGGATTCGTGAGAAGTTGTGGGCGCGTGTGCTGGAGTCGGGTGGTACTGGTCGGGCGACTATGGTGTTTCCGGCGGATAATGAGCAGCGGCTTGAGTTTCGAGTGAATAATGCGGACTGGGAGCCAATCGATTTTGAGGGTGTGAAGCTGATTTATCGGCCGGTGGTTCGTAAGGTTGTGCCGAAATCTGGGTGGAGTAAGGCGAGTAGGTATCGCCGTGCTCGTCGTGGTTAGGGGCTACTGTTTATCGTGTATTCTGGAGTCAGGCTCTGGCTCCAAAGTGATTCTATTTTGCTGATGTAGGGGGTAAAACCCCATGTCAGCAAGC # Right flank : GCCATGAAGACCCGCGCCGCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGCGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 151225-151985 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVFS01000043.1 Rothia mucilaginosa strain 473_RMUC 364_156967_2761259_266_,...,287+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 151225 29 96.6 32 ............................G GCTACTATCGACGGCATTTCGTCGGTATTTCG 151286 29 100.0 32 ............................. GTATCCGGGCTGGTTAGAGGCGGTGCTGTAGT 151347 29 100.0 32 ............................. AGCCCTCGTTGAGTAATGCTGCCGCCAATAAG 151408 29 100.0 32 ............................. GCCTGGCTCTCCTCCATCACCGGCGAGCGCCT 151469 29 100.0 32 ............................. AGCACCTACGCTGCTCCGGGGCCAAACCCTTC 151530 29 100.0 32 ............................. CATTGCTAGACTCACCACTGTGACCAGTCTTA 151591 29 100.0 32 ............................. GGTGGCGACCCCTTCAACCCCCATGACGCCAT 151652 29 100.0 32 ............................. ACCTCTTCGGTCATGTACTCACTCAGGTTCTC 151713 29 100.0 32 ............................. GTCTCCAGAACGACGATTCACCGATTAACGAC 151774 29 96.6 32 .C........................... GAATCACAGAAGCCGAACGCGACTGGATTGTA 151835 29 96.6 32 .C........................... CGCCTACTCTTACCTCTGATGAGGCACGGTTA 151896 29 96.6 32 .C........................... GACGGGTTCGGCGGTGGCGAAGGCATCCGGCA 151957 29 89.7 0 .C...................A.....C. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.2 32 GTGTTCCCCGTATGCGCGGGGGTGAGCTC # Left flank : CAGAAAGCCGGACTCAACCGGTCCATTCTGGATGCCGCTTTTAGTACGCTGCGCCGCCAGCTGGAATACAAGGCCAGCTGGTACGGCTCGCAGGTACAGATTATTGACCGCTTCTTTGCATCCTCTCAGACGTGTAGCGCCTGCGGAGCACGAGCGAAAACCAAGCTCGACCTTCGCGTGCGTGTCTTTGAGTGCGCGGCCTGCGGTGTGCGGATTGATCGTGACGTGAATGCGGCACGTAATATTCGTGCGGAGGCTGTGCGGATGTATGAGGCGCAACTCGCCCCCGGCATGGGGGAGAGTCTAAACGGACGCGGAGTTACTGACTCTGATGCTGCTGTTTCGGTGGTGTTGGGGGATGCGGCGTTGGATGCGTCAAGACCAGCCGCCATGGGCGGCGGGTCACCGTAGGCAAGTAATTGTCTACTCATCCCCTTATATACGTGTGGAAAGTGAATAGTTTTTAGACTTCTGCTAGGCATCATGCCTTGTGGTTATGT # Right flank : CCTTCTCCTCGCCGCCGACAATAACCTTGGGCAGTTTTCCCCGTATATGCGGGGACGTGTGTGGGGATGAGCCCGACAGACACGCTTATATGTTGGATTTTGGTCAAATTATTGTATATTTGTCCTGTACCCAATTTCCGTGCATGCCCGAGAAAGCAGCATCTCAGCCGACGTTGGCTGTTCATTATAGACTGCATCACACAGTGCTTACATCGAATTTGGCTCGAGTTGTGAAGTCAATGGGGGATCTTCAAGAGGCGGAGCGACTGTTCAGAGAGGCCATCGCGATGGACCCAGAGTTCGCCGAATACCACCAGGATTTCGCGTCGTTCTTGAGCGATATGGGCTGTTTTTGAGGAAGCAGCGGTAGAGGCAGGACGCACGGTTGAGCTCGATCCGAGCATAGATGTTCAGGTAGCTCTCAACGACCTCCAAGCCCGTTTTCCGAACGACGAACTTATTAACGAGGCCGTACACCTGAACTCGAATACCGAATGACT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCGCGGGGGTGAGCTC # Alternate repeat : GCGTTCCCCGTATGCGCGGGGGTGAGCTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 20-1696 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVFS01000025.1 Rothia mucilaginosa strain 473_RMUC 342_10685_114057_184_,...,113_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20 29 100.0 32 ............................. CCTCCGGCGACTATGCACGGCGTGCCGGTGGT 81 29 100.0 32 ............................. CGCGCCTGCGCCTGCTCAATAGTGGACGCGGC 142 29 100.0 32 ............................. TAAAATTGAGGACGTTCTTCCGATTGCGGCTC 203 29 100.0 32 ............................. AACCCTCTAGCGACTATCGTGAAGAACGCCGA 264 29 96.6 32 ..........................T.. TGGGACGAAGAGACCAAGCGATCTTTGATTGA 325 29 100.0 32 ............................. GTTGCCCTTAAATACGGTGTACGAAGACATGT 386 29 100.0 32 ............................. TCGCGGCCAATCGTCGCGAGACGCGAGCGCGT 447 29 100.0 32 ............................. TCCGTGTAAGCAGACATGATTTTTCCTTATAT 508 29 100.0 32 ............................. TCTGGTACACATCTAGCGCGGGTTTCCCTGAC 569 29 100.0 32 ............................. CTGGCGATGGTGGAGACAGGGTTTTTGGCGTA 630 29 100.0 32 ............................. GCGCGGGTGGAGGCTTGGAGCATCTCGGCGGC 691 29 100.0 32 ............................. AGCTGTGCAAGCACCAGCTAGCGGATTGCAAG 752 29 96.6 32 ..........T.................. GGCCGGGCGTTGGTGAGGGATTGGCGCGACCA 813 29 93.1 32 T...........................T GGCGACGACTGGTCCGGCCGCGTCGGACTGGT 874 29 89.7 32 ...........AGT............... ACCTTACCCCAGAAATCTGCAAGGGCAGTAGG 935 29 89.7 32 ........T.......T...........C TCGGCTAACATCATGGTCGGTGAGGTGCGCGG 996 29 93.1 32 G...........T................ TCGATTGTGATTTCTGGTGAGCCTGGTGATGG 1057 29 86.2 32 G..C........A...............C TGGAGCAACTGGGTACGTTGACCGCCCAGATG 1118 29 93.1 32 G..G......................... CGGAAGCTGCGGCTGAGGGCGAAGTGTACGTC 1179 29 96.6 32 G............................ ACCGCCAAAGGATGCCGCTACCCCTCAGCCTC 1240 29 96.6 32 G............................ TGCGGGGCGTAGTGGGTGAAACAGCGCGGTCC 1301 29 96.6 32 G............................ TCGATTGTGATTTCTGGTGAGCCTGGTGATGG 1362 29 89.7 32 G..C........A................ CAGAAACCGCCGGGGTTACCGGGGTTAATTTT 1423 29 89.7 32 G..C........................T GACTTCAAGGCTGATGAGATGCGTGACCTGGG 1484 29 96.6 32 ............................C ACTGAAGCGCCCGACCTGACTAAGTTCAAGTT 1545 29 96.6 32 G............................ CAGGACGGCGAAACCCTGGGCATTCTCATCCC C [1550] 1607 29 89.7 32 G...........T...............T ACGCTGAGTGGCGTGCAGCAGCTGACGGTTCA 1668 29 89.7 0 G...........T...............C | ========== ====== ====== ====== ============================= ================================ ================== 28 29 95.7 32 ATGTTCCCCGCGCGAGCGGGGATGAGCCG # Left flank : CGCCGCGCTCGCCCTGGACA # Right flank : CTATATCAAGGGCAATATTGAAAGGCTCTCAACGTATTCCCCGCACTCGCGGGGCACAGGTAAAGCCCCTCGGCCCGCAGCAGTAAGCTACAGGTCGAGGGGCCTCCTCATGCATTAGCGTTAGCTGGTAGAAAGGTCAGCGCCCGAAAACTAGGGAACCGCCCCCTACGCCACCATCGCCTCCTTGGCCGCGGTGCCGTTGCGGGTCCACAGCAGGAACGCCGCCACGCTGTTGATGATGTAGAAAATGTACTTGCCGACGTTCGCAAAGTTACCCTGAGTCAGCGCCTTCACGCACTGCACGGTGTTGTACAGAGCCCAGAACTGCCACTGCATCGTCAGCTTCAAGGCGTTCAGAATGTTGGCCGACAGGGACAGTCCAAACACCACGGTCGTGATCCAGAACAGGAAGGTCATCTGGCCGCGGTAGCCGATATAGTTCGCAGTCAGGGAGAACGCGAACGAACCCGTCACAATGCCGGCGATAATCAGCTGACCCT # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGCGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //