Array 1 367589-369142 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYIA01000001.1 Salmonella enterica strain BCW_5868 NODE_1_length_492870_cov_4.60005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 367589 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 367650 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 367711 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 367772 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 367833 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 367894 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 367955 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 368016 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 368077 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 368138 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 368199 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 368260 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 368321 29 96.6 32 .........T................... TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 368382 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 368443 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 368504 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 368565 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 368627 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 368688 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 368749 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 368810 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 368871 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 368932 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 368993 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 369054 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 369115 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 385275-386446 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYIA01000001.1 Salmonella enterica strain BCW_5868 NODE_1_length_492870_cov_4.60005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 385275 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 385336 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 385398 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 385459 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 385520 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 385581 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 385642 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 385703 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 385765 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 385826 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [385868] 385868 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 385929 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 385990 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 386051 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 386112 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 386173 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 386234 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 386295 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 386356 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 386417 29 96.6 0 A............................ | A [386443] ========== ====== ====== ====== ============================= ================================= ================== 20 29 97.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //