Array 1 11303-10820 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWWX01000022.1 Bifidobacterium lemurum strain DSM 28807 Contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 11302 36 100.0 28 .................................... TGCATAGTAGGCGGTGTTGCCGTGAGCT 11238 36 100.0 28 .................................... TAAGATCGTATCGGGTGGCGGTGGCCAT 11174 36 100.0 28 .................................... TAAGAAGCGCATGTCCTATTACTTTTCG 11110 36 100.0 28 .................................... TGTAGGCCTGCGGGATCTCATCGATGAA 11046 35 97.2 28 ............................-....... CTTTGGTCAGGCGGTGAGCAGCACGAAG 10983 36 100.0 28 .................................... CAAACATCCCGTGAATGCGGGCAAGATG 10919 36 100.0 28 .................................... GAATGGAGCGGCCACGTTCCCGTGATGC 10855 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 8 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : GAAGGGTGAATGCTAATTCCCAGCCGATCATCTGCGTGCCGACGCCGTTGC # Right flank : TAGATGGCGGAGGAGAGTTCGTGGAGGTTCAAGCTTATCAAGAAGGGTGAGCAGGGATCTTTCGTCGTCCCTGTTCCCGATATAAATAGAGTCGTATATGGTGTCGCTGAGTGATGACAATGAGACCTGCATCGGTGAAAATGTTAGTTCTTCATACGAGGGATTGGCGTTGTCTTTGTGAATGGTCTACTTTGGTTTTTGCGCGTGATTAATATTTGAAGCTGAGAATTAGTGCTTTAGTTGCGTGTTTAAGCCGTCTTCTGTTGGAGAAGACGGCTTTTTCAATATGTTTCATGACGACATCTGTTTTGAGATTCTGTCTCGGCATACCATGCCAATAAATATTTGGAGAGCCATGAAAGGAGATTCGGATGTGGCGTATAGATATGACTGTTATGCATGTGGAAAAGGAACGTCACTTTACGGTGAAAGTGCTAAGAGCCGCACTGCTGGTTGTGGTCAGCATGCGCGTAGCGATGCATTGCATATTCCAAGTGTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 621-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWWX01000023.1 Bifidobacterium lemurum strain DSM 28807 Contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 620 36 100.0 28 .................................... GACCATTGGCTCGTCTACGTATACGCCA 556 36 100.0 28 .................................... ATTTGAAGCCGTGTATGTCGTGCGGGTG 492 36 100.0 28 .................................... AAAGGAGTTGGCGATGAATCCGCTGAAG 428 36 97.2 28 .................................C.. TTGGTGTGACGTTCATTGAGGTTACATC 364 36 100.0 28 .................................... GCTCATGCGGGATGAGCAGACCATCTAT 300 36 100.0 28 .................................... ACGCGATAGATGTCGAGTTCGCGGACGG 236 36 100.0 28 .................................... CGATCATCTGCGTGCCGACGCCGTTGCC 172 36 100.0 28 .................................... TGCATAGTAGGCGGTGTTGCCGTGAGCT 108 36 100.0 28 .................................... TAAGATCGTATCGGGTGGCGGTGGCCAT 44 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 10 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : GTTTAACGGTGTTGGTTTGACCATTCCAAGCTCTTTGAATGACTTTGCTCAGCAGTTTGGAATGTACTGCGAGAAAAAGATCGACCGTCTTGAGGTTCCTCTCTTTGAGGGGATCTATGAAAATCGATGAGGACAGCGGAGGCATGTGGTGTTTGGTGATGTTTGATTTGCCGGTGCGAACCAAGAAGCAAAGGCAAGAGGCCACACGGTTTCGTAACTTGCTGCTTGATATGGGCTATTCGATGGTGCAATTCTCTGTATACGCTCGATATACGCCAACTCAGGCTGGAAACAGGGCGACGGTGAAGATGGTAAAAGAAAACCTGCCAGCGAAAGGGCAGGTCCGAATACTGCATATCAGCGATCACCAGTGGTCGACGGCGCTGCGTTTTTCCAGTCGTAAGGTGGATCATGAGGAAGAAACTCCAGATACGCTTTTGCTTTTTTGATTGGAAAATCGAGCGTAACCTATTGGAAAATAGCCCTTCTTGACGAGCTAT # Right flank : CTAAGAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //