Array 1 149781-150418 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054583.1 Corynebacterium ulcerans strain LIV-14050 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 149781 29 100.0 32 ............................. GCATCCATCCGCCACGACTGATTTGCACCACA 149842 29 100.0 31 ............................. AGGCAAAAACATGAGCTCCGAAAGCATATCC 149902 29 100.0 32 ............................. TTGACGGCTGGCTCAACAAGGGGATTATTTTG 149963 29 100.0 32 ............................. GGGTGCGCCTTTGGTTCATTTTCACGCTTTGC 150024 29 100.0 32 ............................. CACAAGCGGAGGTGTCGGCGCTCACCCAGAAA 150085 29 100.0 32 ............................. CCCCACTCTCAACCAAGCTGGGATTTGAAATC 150146 29 96.6 32 A............................ CGCTACAAGACACACCACGCCGACCGCGATGT 150207 29 100.0 32 ............................. GGGTGGATGGCTCGATCACGGCTAGCCCACCA 150268 29 100.0 32 ............................. CATTGGTATTGAACCGATCCACGTAATACTGC 150329 29 100.0 32 ............................. CCCATCAAGCGACTTGCCCAACGTCTTGGCCT 150390 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GGAACTACCTCCGCGTACGCGGAGAAAAG # Left flank : ATTCGCTTTCACTTTTGAATTTTCAAATAACCTGCACTCCCCCAATATGCGAGGGGGTGCGTAGTGCCCGGCGTGGGAATCGAACCCGCGAAAAACCGTTCAGGCTTTTATTTTTTAAAAGGTCGTGTATAGTAAGGATTGGTTTTGGCTAAGGCTCCGGTTGTGGTGACTGGGGCCTTTTCTTTTGCCCATTTCCCGCCAGTTGTTAAAGAAGTTCGTCCGCGGATTTCACAACACCATGCTTGACCAGTGTTTTTATCGTCGCAAAAACTTCGTTGATCTTGGTAGTCTTCACGGTGGTGTTATCACCTTCAGGCCACACCAGAGGGGCACTACGCTGCACAATCGCCTTATACCCAAAGGATTCAAGAAGATCAGCGCGGGCCTTAGCCCCAGAGCGTGATTGATAAAGTTTCGTAGTGGAAGGCTCAATAAAAACATTAGTATTGAACCGATCAATATAATCCTGCATCGGTATCCAGCCTTTAGGGACTACGCTT # Right flank : GACTAAATAACCTGCGCGTTTACTCACTCTCTGGGCAAAAATCCTCCAAAACTTCGTCTGGAATAATTGCATCGGCTTCATCCAGGGGGTCAGCAAAACGCACGTCTTCTATTAGACCACGAGCAGAGAGGAAAAGGCCATCAATATCAACGACGGGGCGCCGTTGTTTTCCTGTTGTGCGGATTCTGAACCCTTGCTCAGCATCATATTGCGGGTGAATCAGAGTAAGGGATCCTGCTAGGTCTATGGATTGGCATTTTTCCCAAAGGTTTTCCATGACGGCTCTGGATAGAACTCCTACATAAAGACCTGCGTCTACTTCGGAAAGGAAGCGACTGAGGTAGCCGTTGAGGTGGTTCGGAAGGTTATGTCCTTGGATGACCGCAAACATTTATTTACCACCATATTGTGTGTGCCCTGGGACTTCGTGGTTTCTTCCGCCGATGAGGCGGTCGTCGGTACGCTCGGGAAGATGTGGAGTGAGGATCTCCATCATAATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAACTACCTCCGCGTACGCGGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 229989-229291 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054583.1 Corynebacterium ulcerans strain LIV-14050 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 229988 36 100.0 39 .................................... ATGGGAACGAACCTTAGGCGACTACGAGCATAGGGTGGA 229913 36 100.0 39 .................................... ATGGGAACGAACCTTAGGCGACTACGAGCATAGGGTGGA 229838 36 100.0 36 .................................... GTGGGTGATGTGCTTTTGAAGGATCCCGAGCGGGCT 229766 36 100.0 38 .................................... TGGTTCAAGCATGAGCTTGACCGGCTGAAAGAAAAATT 229692 36 100.0 35 .................................... CTAGGACGCTGCGCTTCATCAGCCGAGGTATTCCT 229621 36 100.0 39 .................................... AGAAAGCCCTTAGCGCGATGCGGTCACAAGGATCATTAG 229546 36 97.2 37 ..........................C......... TCGAAACTCGATGTTGTCAAAATCATCAATATCGAAA 229473 36 100.0 38 .................................... TATGTGGCCTCGCTCCTTTCCGCGCCCCCGTCCCTGAC 229399 36 100.0 37 .................................... TCAGGCCAGTGATCGACCCGATGATTCCACCATTCGC 229326 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 10 36 99.7 38 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AAATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCTAAGATCTTGCAAAAATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTGCTTCGGCTAAAGGATGAAATAAAACTCAGTATTAACGCTGAGGAAGATTCCGTTTTATATTGCGACCTTGGCCTGCTATCGAAAGTAGACACCACATTTACTTACGAAGGCAGAAAACAAGAGATCACTGACAATGAATTTCTGATTATCTAGCCGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTGTGGTTTTCATGGGGCAACAATAATCACCCCCTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGCAATAAAAGGGCAAATACCGAGGTTAAGTCAGTTAAAATGAGGGGGCT # Right flank : AAAACCCTCGGCGGTATTGAACTAGCCTCCAAAGGTGCCGTTTTACCGTGGCCTCTGATGGTCCAGTCTCTGACATAATCTCGCGACAGGTCAGAAGCCTGTCTTCTTCAATCCAAAATAACGCCATAAACAGAAGAGTCAGGAAGGTCATACCTCTTCCAAAAACTGCGATGGTTCCTGCGTAAAGAATCCATATCCAGCCGATAGAAGCACTGTCAACATTACGAGGGTAAGGCAATCAGTTTCTGGGAACTCCGCAAGACGTTGCCCGTATTGCTATTACCTATCGAAGTTTTTACGTGTTTACGAGCATGTAGTCTTCGTTAAGATATTGGCTAAAATTCTCCGAGTTAAGCAACAAACACCACTTACACCTAGTCCTAAAAGAAACAGCGAAACCCAGCCCAGTCCAACGGTGGCAGTATCACCAGAAAACTTGAGTATGAGGATTCCTAGTACGCCTAGGGATATAAACAAAAGGTCTACGGAGAAAAAGCGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 2059082-2062106 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054583.1 Corynebacterium ulcerans strain LIV-14050 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2059082 29 100.0 32 ............................. CTCCAATTGGGGCGATTGCTCCGGTGCTCAAT 2059143 29 100.0 32 ............................. AGATTTGCGTTTCTTATCCGAAAGGCCTTTTT 2059204 29 100.0 32 ............................. CCTGCGAGAAATTTTGACCGTGCACCCCTGGA 2059265 29 96.6 32 ............................T GGCATGGGACGTCAATTTTGCGCCCTAGTTAT 2059326 29 100.0 32 ............................. ACTGTGAAATTCGCGAATGCCGGGGTTATAAA 2059387 29 100.0 32 ............................. GCTCCGTAATCGTCGAAAGTTTGCCTTTAACC 2059448 29 100.0 33 ............................. GGCTTCCGCTGGCTCCCCGCCCTTCGCGTGGTG 2059510 29 100.0 32 ............................. GGTTTCTAGCCATAATTATTTTCCCCTTTCAA 2059571 29 100.0 32 ............................. GGAGAAGTGGCTTACTGCCGAAAAGTCTACGA 2059632 29 100.0 32 ............................. AACCCGCGCTCGCCCTAATCCTCATAAGATTT 2059693 29 96.6 32 ............................T AACGTCCCAGTTGTTAGGGATGGATTTTTCCA 2059754 29 100.0 32 ............................. GGGCAGGATTGATTCTGGGCATGATGCGGCGT 2059815 29 100.0 32 ............................. GTATAAAGCAGCGCACTCTGATCTTTCGCAAA 2059876 29 100.0 32 ............................. CAAGCCCGCTCGGGATCCTTCAAAAGCACATC 2059937 29 100.0 32 ............................. AGATCGCTGATTTGCAGGATGATCAAGAAGCG 2059998 29 100.0 32 ............................. AGTGCAAGGCTACTCTTATAGCTTAATGGATG 2060059 29 100.0 32 ............................. ATGCCTTTCTCTAGAGCCGCCAACGCAGCTAA 2060120 29 100.0 32 ............................. GCTACGAGCAAGCCGGCATCCGCGTCTGCGGA 2060181 29 100.0 33 ............................. GTGTGATCCGATTGCATCCCGTAAGGAATACAC 2060243 29 100.0 32 ............................. ACATCTGTCAATGAGGGGGATGAATTAGTGAT 2060304 29 100.0 32 ............................. TGCTAAGGCGTTTGCGTCTCCGTTTTCGGCTG 2060365 29 100.0 32 ............................. AAAGTCAACGGTGGGAGCGCAAGGTTCCTTGA 2060426 29 100.0 32 ............................. GTTGAAAGTTTCAACCTCGTACGCTAGGCGAG 2060487 29 96.6 33 ............................T TGCAGGGACAGGGCTTTAGACCGGCGATCTGCG 2060549 29 96.6 33 ............................T TGCAGGGACAGGGCTTTAGACCGGCGATCTGCG 2060611 29 96.6 32 ............................T ATTAAAGAAAAGGAGATGGTGTGATGGAACGC 2060672 29 100.0 32 ............................. AAGAGAAAACAGAAACGATGAATAAACCACTG 2060733 29 100.0 32 ............................. TCAAAGAAAAAGAAAAAGAAGAAGATAATTAA 2060794 29 100.0 33 ............................. TTCTTCTGGAGTTTCTGCGGTGATGAAGCGGTG 2060856 29 100.0 32 ............................. CTGCGAAAACACAAAACCCCAGCCCACCAAGG 2060917 29 100.0 32 ............................. CTCATCAGGAAGGTTGTAGCACTCATCAAAGA 2060978 29 100.0 32 ............................. CAGCCATGCGTGCACCGTTTTTGTGCATGATG 2061039 29 100.0 32 ............................. TTTTCACTCCACCTCCTTCCCTTTCAGGCGGT 2061100 29 100.0 32 ............................. GCCTCAATCAAAGGATCCAGCGTCGCCGCAGA 2061161 29 100.0 32 ............................. TATCTCAAGGAAAAAGACCGGCTGACTGCGGA 2061222 29 100.0 32 ............................. TCCGGGCTGGATGCCCATAAGTCGGCGCGCAT 2061283 29 100.0 32 ............................. CTGATGGAGCGGGGGCGCTCCCTTTCTGAGCT 2061344 29 100.0 32 ............................. CTCCAGCTTCTCCCTCACCTCTCTAACTTCCA 2061405 29 100.0 33 ............................. TGAGGTTATTTATTTGGTGAGGGAGTGATCAAA 2061467 29 100.0 32 ............................. TCCTCGCGATCATCGGAGGAGCCATCGACGCC 2061528 29 100.0 32 ............................. AGAGATTACGCAGGCAGGCCAAGTCCATGAGA 2061589 29 100.0 32 ............................. CAATCAGCCCTCCGAATCGGCAAGCATACTGC 2061650 29 100.0 32 ............................. CGATGGAATGGTGACTTTCATACATGAATCTG 2061711 29 100.0 32 ............................. CGAAGCTCAGAGCGCAGCTCCACCCACACCTC 2061772 29 100.0 32 ............................. ATTGAGGCTTATGGTAGGCATCTGACTGCGGG 2061833 29 100.0 32 ............................. TCTCTACACATGGTGTAACGGGCCAATGCACA 2061894 29 100.0 32 ............................. ACCCGGTGCGTGGGCAAAACCCCGCCCCGTCG 2061955 29 100.0 32 ............................. CTACAAACTTTTCTGCAAACGCCACCTCCTCA 2062016 29 100.0 32 ............................. ATCATTGCCCAGCTCACGAGCACGCTCGGCGG 2062077 29 82.8 0 ....................A...AGC.T | A [2062096] ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.3 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : CGAACACCGCCAGCCCGAGAAACCCCCGAAACTGCGACTGCTCAACATCAAGGATCTGCACGCCATTAGCAGCTAACACTCGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTATTTAGGAATGACGGGCTCCGCATCAACGAATGCGCACTTGCTCCCCATCCTATGGGGCAAAGTACCTTTCCTTCGGTCTTGTGGTTTTACACCTTCTTGCGGATCCTGCGGGGGTGTGCAATAGTCTTTCCCGCTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTCGCACCGATTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGACTTCTTTGGTGATTAAACACGCAGGTAAGTTAGT # Right flank : TACAAAAACCTATCATCAGCCTTGATGAACTTTTTAGACGTCGAAGACCACAGAAGAAAACAACAAGTTGATCCGGTTTTCCAGCCACTGGCAAGACCTCAGGAGTAATTCACCACGTTGCTATCGCGACAGCAATCAAGAGGAAGAGCGAAGACATGAATACGTACCAGAAAATAAAGGAAAGACAGGAGGAAAAATCTATCTCGGAGTAGGACTACAACCAGGCAATCAAGACGAAATAGCTATCGAAGCCTGCTACATAGAAGCACTTATTGACTATGGCTATCTCGATGTAGAACTAAAGAAAGAATTTCTAAAATTATGGCTCACTGATGATATGTACGATGATCTGAGCGATCTTGACTCAATAGAACTGAAAACATATCGTAACCTACTAAAATATGCAGGCATGCAGCCTCGTGTAGATACGTCTGTCTTCCGCCCTGAGCCCGCATAAAACTACATCGTTTAATCAATACATCAGTAACAAGTTTTCTATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //