Array 1 378199-379476 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWS010000001.1 Listeria booriae strain FSL L7-0519 NODE_1_length_415201_cov_35.351785, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 378199 30 100.0 35 .............................. TCTGTTTTTCAATCAACGATCCTTTTTGATACGTC 378264 30 100.0 36 .............................. AAATAGCCCGCACCGTATCTCGGTCGGGTTCTGTCA 378330 30 100.0 35 .............................. TTTTTCTTTCTCGTAATCTTCAACTTAATCACCTC 378395 30 100.0 36 .............................. AGGAATTTCAAAATGCTATTAAACGCTTGAAGTCTC 378461 30 100.0 36 .............................. GAAACAGAGTATTTTTTAATACCTTGATCCGTCAAT 378527 30 100.0 35 .............................. CTGTTAGGACTTTCCGAGTTATCAGCATGCCCTTT 378592 30 100.0 37 .............................. CTTTCAAAATTTTCTACATACCTCATATTGTCGATGT 378659 30 100.0 35 .............................. AAAGAAGAAGACTTTTCACTTTCTGATAAATTACC 378724 30 100.0 36 .............................. GTAGTATTCACAAAGTCAATTGCTGCAAGTAGCGGG 378790 30 100.0 36 .............................. GTTTCTAGCGCATCATGCTTTTCGAGAATGCTGTCA 378856 30 100.0 36 .............................. ATCAGTGAGTTTTTGGAAACCGACGTTAGCGATCTA 378922 30 100.0 36 .............................. ATGACTGTTTTTGATATATCACAAACCAAAGGTGAT 378988 30 100.0 35 .............................. CCTTTATATTAGCTATTTCTATACTTGAGAAGATG 379053 30 100.0 35 .............................. CTGTTAGGACTTTCCGAGTTATCAGCATGCCCTTT 379118 30 100.0 34 .............................. GTACAACAACAGCAGGCACAAACATATCAACAAC 379182 30 100.0 36 .............................. CCTGAAACAATCGATATTGGAAATCTCCTACAATCT 379248 30 100.0 39 .............................. TGTGATTATCTGCTATAAAGAGATGCTTCGCCATGTTCC 379317 30 100.0 36 .............................. TTTTTTCGTCCGCAGTCAAGTATTTCTTTTTGATTC 379383 30 100.0 34 .............................. CATACATTTTCGGCAATGTGGTACGGCCTTGATG 379447 29 83.3 0 .................A..-...C..G.C | G [379449] ========== ====== ====== ====== ============================== ======================================= ================== 20 30 99.2 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGGATGATAAGTGGTGTTTGGAAAGGCGGGGATAAAAATCTGTCGACCGTCGGTAGCGTGGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGACTAGATTTGAGACCGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGGTTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CTAGATTGCCCACAGATGTAGTGTTTCTATCCATTTTTTACAGAATAAATTATCATTTAACAGCCTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGATCTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGGTTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGGGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGAATTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAACTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 22014-23549 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWS010000005.1 Listeria booriae strain FSL L7-0519 NODE_5_length_280566_cov_33.184004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 22014 30 100.0 34 .............................. CTTAGAGAAGGAATTTATAATGTTTCGGGCTAAA 22078 30 100.0 35 .............................. CTACATGGGCGTAGAAGGTTAACGCGTCGCCCTCG 22143 30 100.0 36 .............................. GCCGCCGTTGGGTCGATAACAAGCCCTACGAAGACA 22209 30 100.0 34 .............................. ACCTTTTTATACGCGATTACAAAAGCGGCTCCGA 22273 30 100.0 37 .............................. GTGACTTCGGTAAACTCGACGTTGCGCTCGGCGGCAG 22340 30 100.0 36 .............................. AAATAATCAACATAATAGCTGTACAAGTCCTCTACA 22406 30 100.0 36 .............................. GCAGGTTATCGAACAAGCGACCCGTATCTTGAGGGC 22472 30 100.0 36 .............................. ATGCCGCAGGCACAGGAGCAGATAAATTAGATATCG 22538 30 100.0 36 .............................. TTTTACATAGTAAAAGAGAGCAATCGTGACCCAATT 22604 30 100.0 37 .............................. CCGCATGCGGTACATTTATCATCTGTGGAGACAGGTC 22671 30 100.0 34 .............................. ACCGGCCTTGCGGTTAGTGAGGTTACGGCAACGA 22735 30 100.0 36 .............................. CACTTTGTGACTGTGACAGCGACTTAATGAGGTGAA 22801 30 100.0 37 .............................. ACGACGTTGAACGCAATCAAATAACTAATCCATATGT 22868 30 100.0 36 .............................. TCTGTTATGCAGATTCTTCGATTTGATGAAAATAGA 22934 30 100.0 34 .............................. CCTCTTTGATAATATCTTTCGTTCATATAATTAA 22998 30 100.0 36 .............................. ATAGTTCCGGTTTGCTTGAGCTCGCGATCCTGGATT 23064 30 100.0 37 .............................. AATTGTGTATTGACCTCACCAATCGCTTCGCCAAAAG 23131 30 100.0 36 .............................. TAAAAATTCACCGTTTCTTGGAACTTCATCACCTGT 23197 30 100.0 36 .............................. CCCTTCAAGGCATAATAAAAGCACTGTCATATCAAT 23263 30 100.0 35 .............................. TGTCACGATGAACGCTTCATTTTCAAGATAACCAT 23328 30 100.0 36 .............................. GATGGACGAATGACGAGTTCCACATATAAGGGAATA 23394 30 93.3 35 .................A....G....... CCAATCCACCAATTTTCAGTTTTACGGTGTTGCTC AATA [23408] 23463 30 90.0 27 .............C...A......A..... TAGGAAAAGGGCGCACTTATACACCCT Deletion [23520] 23520 30 70.0 0 ......CC.G.....C.A.....CA...CA | ========== ====== ====== ====== ============================== ===================================== ================== 24 30 98.1 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACCCCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGGCGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCGAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGTATTGGTACTAAAGAGATTAAGCCTATTTTCGGAGTTTGGGTTGTAAGGTTTGAGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : ACGGTCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTTCGCAGCAGTATACTCTACTTTCCAGTCCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCGCGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATTGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATTTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGTATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 48980-47897 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWS010000014.1 Listeria booriae strain FSL L7-0519 NODE_14_length_84375_cov_32.714972, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 48979 30 100.0 35 .............................. AAAATACCTGTGATAATACTCGGCAACCCTTTTTC 48914 30 100.0 34 .............................. CCTTTTTGGGCTGTTTTCGCTCCATCTCCTCTTC 48850 30 100.0 36 .............................. ATACGTATTACAGGCGTATAGGCAGGCATCTGCCCT 48784 30 100.0 39 .............................. GTCTTAGCATTGCCATCCGCAAAGTCGTCCCTGCTTGGC 48715 30 100.0 36 .............................. ATTTATCACGCATCAAACCTGAATCACGGAAAATAG 48649 30 100.0 34 .............................. CAATCCTAATCGCATCCTCAACGCTACGAGCTAC 48585 30 100.0 35 .............................. GAAGATAGCGCGCTTTTTTTGAATCAAGAAATGTC 48520 30 100.0 36 .............................. ATGGAACTTGGAATATATTAAACATCGGCGTAATGG 48454 30 100.0 36 .............................. AACATGGTCGTATACACAGCATTGAATCGCTTCAAC 48388 30 100.0 36 .............................. ACACGAACGTTTAAATCTGTTTTGACAGAAGTATCA 48322 30 100.0 36 .............................. CTATATGCTAGTGGAGTTCCTCCAAGACTGTTATCT 48256 30 100.0 36 .............................. ACATTTTTTTGGTGGCGATGATTAGTTCACCCTTAA 48190 30 100.0 37 .............................. CCTTTTTCAATATTGTTTTCAAGAGTGTCGTACGTTA 48123 30 96.7 37 .............T................ GATTGCAAGCATTTTTCGAAAGCAAAGGGCGCAGTTC 48056 30 96.7 34 .............T................ AACTTCGAAAAGTGGGCCAATACAATTCGATTAA 47992 30 96.7 36 .............T................ TTGGTTGGCACAAAATCAAGTGCTTGTCCGAAAAGG 47926 30 76.7 0 .............T...A..C..CA...TC | ========== ====== ====== ====== ============================== ======================================= ================== 17 30 98.0 36 GTTTTTATCTAAGCAATGTGTAATGTAAAT # Left flank : GATGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTCGCAGGCACAACCAAATCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTCGTTGTAACAGCAATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGATTTCTATTTAATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAATGGATTAGGATGGTTTTCGAGGAGGCGAAAAAAATAAGTAAGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGAGTTAAGAGGGTACCT # Right flank : CCCAAATAAGGAGAGACACCAAATGGCTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGATGACTACGGAAATATATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCTGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAATTCCACTCGACGTATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAATGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATTCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAATTACGAGAACG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGCAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //