Array 1 241329-244164 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG730301.1 Citrobacter youngae ATCC 29220 Scfld2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 241329 29 100.0 32 ............................. GAACATCCATTCAAGAATGAAGTTGAGATTAA 241390 29 100.0 32 ............................. CCTCCAGACCAACTCGGTTACCCGGTTTAAAA 241451 29 100.0 32 ............................. GCTGGCTTACGTTTTTCTTTCCTTTCGGTCCC 241512 29 100.0 32 ............................. CGGCAGGTATTACGCCTGTATCAAGGTTGATT 241573 29 100.0 32 ............................. TCGGCGGGCGTGGGCCTGTTTATGTTTGCCTG 241634 29 100.0 32 ............................. AAAAAGCCGCACGCGAGCGCGTGCTTGATATG 241695 29 100.0 32 ............................. TTACCCCCGGAGACCTTGACGGTTTTACACAA 241756 29 100.0 32 ............................. ACGCCCTTTTCGTTTTCGAAAATGCGCACACG 241817 29 100.0 32 ............................. CGCGCTCTCCGGCGCTTTCTGCCGCACCGGAT 241878 29 100.0 32 ............................. GCATCAGATAATTTACTCATTTGAACAGGTTC 241939 29 100.0 32 ............................. TACGGCGTCAGGTGACGATTCCTGGATTGGTG 242000 29 100.0 32 ............................. CTATGAAGGCGCTAAATTCTGACGATCCGCAA 242061 29 100.0 32 ............................. GGTGCTGTGTTGCTACATTGTCCGCAAACGGA 242122 29 100.0 32 ............................. GTTGCCTGTACGTCCTCGTTAATCTCTTCATT 242183 29 100.0 32 ............................. GGTGGGCGCTATATGTTGAGGTTCCCGCCAAC 242244 29 100.0 32 ............................. TTCGATAAGTTTATTCGCCGCGGGCAGGGTGA 242305 29 100.0 32 ............................. GGGATCCTGGAAGCCCGGAAAATCCCGCAAAC 242366 29 96.6 32 ............................T CAGAAATGGCTTTTTGGGTAAGCGGATTAGCG 242427 29 100.0 32 ............................. GGGGCGGCGGCATATTCCCAAAACATGGATAC 242488 29 100.0 32 ............................. ATATCCAGACGATACCATCGGAACTGGGGGCT 242549 29 100.0 32 ............................. GGCGCGCGATAAATTAAAGATATCAGATATAA 242610 29 100.0 32 ............................. TGCGCATTGAATCTAATTAACGGAGCGCCCCA 242671 29 100.0 32 ............................. TTTAATTATCAGCGGGCAGATACTGAATAGCT 242732 29 100.0 32 ............................. ACGGCGAGTTTGTGGAGGTGGATTCATGATTA 242793 29 100.0 32 ............................. CCGTATGCGTTTGATGATGTGGACGGGCAGGA 242854 29 100.0 32 ............................. GGAAAATTATGAGCACTACACCTACTAACCAT 242915 29 100.0 32 ............................. TTGCCCAGGGGATGGTGACGTTCCTGTCTCAG 242976 29 100.0 32 ............................. GGGTGGCGTTTGTGTGAATGCCGAAAAAGACC 243037 29 100.0 32 ............................. TCACTGTCGACCTCAGTCAGAAATACGGATAC 243098 29 100.0 33 ............................. CCGTTTATTCGCTGGCAAAGGCGCTGCTGATTG 243160 29 100.0 32 ............................. GTTAGTTTCGAACCACAGCTTCGCGAACTGGA 243221 29 100.0 32 ............................. GAAGATGCCGCACTTATTAACGCGCGCGCCGC 243282 29 100.0 32 ............................. CCGTTAGGAACGGTTGTGGCTGGGGGTGGAAA 243343 29 100.0 32 ............................. CAAAATGAGTGTGGAATGTCCACAAAACGTCC 243404 29 100.0 32 ............................. GTTTGCCAATAACGGCGCGATCGCTTCAATAG 243465 29 100.0 32 ............................. GAACATTTCTTATCACGGATTAGCTACGCCAT 243526 29 100.0 32 ............................. GCCGAACAACCGAAGACAAAAAAGGAGGGTAA 243587 29 100.0 32 ............................. CGGGCGCTGATATTTCTGGCATTGCGGAAAAT 243648 29 100.0 32 ............................. CGGACGGCACTCAAATTACCCGTAGCCACGTT 243709 29 100.0 32 ............................. CAAAAATCAGCCAGGAAATTTAATCCTGACCA 243770 29 100.0 32 ............................. CCCTTACCCGCCTTTTTGAGATTTTTTGAAAT 243831 29 96.6 32 ............T................ CGCTGGCATCAGGCGTACCGCCACTTTAATTC 243892 29 100.0 32 ............................. TCACCAAAACAGGGACAGAAAGTGTCACCAAA 243953 29 100.0 32 ............................. TTTAGGGTAAATGTTGGTATCAGTGTCAGCCA 244014 29 96.6 32 .............T............... CCGCGCAAGTGAATGCGAGTGCGATTTTCTTC 244075 29 100.0 32 ............................. CTGGAACAGATTGACGCTGAACCGGACGAGGA 244136 29 89.7 0 ...........A..C.............C | ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGTGCTTGCCGCTGGAGAGATTGATCCTCCGCAACCCGCTCCAGATATGTTGCCCCCGGCAATACCTGAACCTAAACCGTTAGGGGATGGCGGTCATCGGGGTCATGGCTGATGAGCATGGTTGTGGTCGTGACAGAAAATGTTCCTCCCCGTTTGCGGGGAAGGCTAGCGATCTGGCTACTGGAGATTCGCGCTGGGGTTTACGTTGGCGATACGTCCAAGCGTATACGAGAAATGATTTGGCAACAGGTCACGCAATTGGGTGGCGTTGGAAATGTAGTGATGGCCTGGGCGACAAATACGGAGTCAGGCTTTGAGTTTCAGACCTGGGGCGAAAATCGTCGTATTCCGGTAGATTTAGATGGGCTCCGATTGGTTTCTTTTCTTCCTGTTGAAAATCAATAGGTTGAGCGTTCTTTAAAAAGATAAATTTGTTGCTTATAAGTTGGTAGATTGTTTTTGTGTGATAATTCATTGATGTGTAAGTATATTTTTTTAGA # Right flank : CCGCCATTATGACGGGGTGAGCTACACGGGCGTTTTATAACCCGGCCAACCGGGCAAATAACGTTGCGCCAATAAGAATGCAGTTTTCGTTGGCAATAAATGGATTTGAATGCAGAGGGTTATTTATCCCTTTACTGTGATCGCCGCTGCCGAGGAAGAAAAAAGCGCCCGGTTTTTCTTCCAGGAAAAACGAGAAATCTTCTGAACCTACCATTGGAGGGCGGTCGGTAAGGACATTTTCAGTCCCCAGGTACTCCTGGGCGGTTTCTATCAAATGTTGCGTTTCTGCCGGGTGATTATTGATAGCCGGATAACCCATTATGTCTAAATCAACGTTATACCCTCTCCGCCGTGACTCCTGGATCTCCTCCATAAAGTGACGGGTTAACGTCTGATGCACCGATTTGTCGAATGAACGTATTGAACCCTGGAGTTCAGCATTGCGGGCTAAAATATTCGGCGCTTCGCCAGCCTTAAGCATACAGGTAGAAATAAGCGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //