Array 1 1-569 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEPA010000183.1 Dickeya dadantii strain Aka1-1 Aka1-1_contig_183, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 28 96.4 32 ...........C................ TGATCGCTCTGTCCGTGGGCCTTCCCATAGGC 61 28 100.0 32 ............................ CATGGATTGAGCCGGCGCTCCGTTCATTGCCG 121 28 100.0 32 ............................ ATACCCCTTTATCCACGCCGCCGTTTATTACT 181 28 96.4 32 ...........C................ TGCGTCAGTGCCGGGCTGGTGACGTGCGGGAT 241 28 96.4 32 ...........C................ TGCTCCTGAGTCCAGCCGTAAAAGTCATTGTC 301 28 96.4 32 ...........A................ ACTTGTTCGGAATTACCGGACAACTGGAGCAA 361 28 89.3 32 ........T..A.....T.......... CACTCACAACCCACATTATTTATACTGTATAT 421 28 100.0 32 ............................ TGAACTGTGGAGGTGGACGGGCAATGATCGCT 481 28 96.4 32 ............A............... ACCAAGGCCACAGCTGTAGCGTCTGGAACGAC 541 27 78.6 0 ...........CAC.........-..CC | GG [562] ========== ====== ====== ====== ============================ ================================ ================== 10 28 95.0 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : | # Right flank : GGTTTTCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTCTGACAAAAACGCTGGGAGCGTTTTTGAACAGCGTTTACGTTGGCCCGCAGGGCGAGCCACAGCATGTGGCGAGTAAACGCGTCACGGGCGGCCCGAACAGCGAAGGCGAATGCCGAAGGAACCGCGCCAGCGGCACAGTTTAGCCACCAGCCAGAGGTCAAGGAGAGGTGGCGTTTGAACCTCTCCTTGTCGTGCGTGCGATGGAATGGCAGAGAAGCGACACCGTTTATCCCGCACGAAACTATTCACTTACCAGACAAGATTCACCGTTCGTAAGACAACATGGCTGTTTGTCAACAGCCTCAGGGCCGCTTTTGCGGCCCTCGCTTTATTGCTAAACGGTAAGATTGTAAGCGGTAATATTGTAAA # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 301-93 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEPA010000005.1 Dickeya dadantii strain Aka1-1 Aka1-1_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 300 28 100.0 31 ............................ CCGAACGTGTCCGGCATCCCTTCAGTGAGGG 241 28 100.0 32 ............................ TACCATGACCCGGACAAATATGACCGTATCGA 181 28 96.4 32 ............G............... GTGAGACTTACGCATACGATAGTATTCACGAA 121 27 82.1 0 ...........C.C.........-..CC | GG [98] ========== ====== ====== ====== ============================ ================================ ================== 4 28 94.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGTCACGGAAATCCCACCCATGGCGATATCGCACTTGCCGGACTGAAAATCCGGCATCAGGGTTTTCCAGCTGGTTTTTACCCACTCCACTTTCACGCCCAGGCTTTTAGCCAGCGATTGCGCCATAGCGATATCGATCCCTTCATAATCGCCATCGGCGCGCAGCGACGTGTACGGCTTATAGTCGCCGGTAGTGCAAACCTTCAGCACCCCTTGTTCCTGCACCTGATCAAGATGAGACGCGGCGCTGGCGCCGCCGGCCAGCCCCAACAACAGAATGAGTGAAAACCGTTTTTTCATGAGAGTTCCTTGCAAGCCTGTCAGGCAAAAGCGCCACTGTATCATGCCGTTTCTACGGCTGCCGGTTTTGACCCTTTTTTTTCGCCTTGTTATAACTCATTGATTTTTAATGACGACAATGATCGACGTTAAAAAAGGGTTTTCCAGGAAAAATCCCGATTTCCCTTTTAAAATCAGGTAATAGGCGATAAATTGCTACG # Right flank : CGGTTTGCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTCTGACAAAA # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //