Array 1 462494-463188 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RBYS01000003.1 Listeria innocua strain Lin13-011 Listeria_innocua_Lin13_011_Contig03, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    462494	    36	 100.0	    30	....................................	CGTAGCGCTTTGGTAACTTTGCCTAGGATA	
    462560	    36	 100.0	    30	....................................	TGCAAAGTATTTCTTTATTTACTGCATTAT	
    462626	    36	 100.0	    30	....................................	AAGCATCTGTAAAATCTGTTAAATCGTCGA	
    462692	    36	 100.0	    30	....................................	GTCGCATATAATGCCATCTAACTCATTATA	
    462758	    36	 100.0	    30	....................................	TTTCTCACCAGTCCCAAACTCATAATAAAT	
    462824	    36	 100.0	    30	....................................	AATGGATAGAGGAACAACAAGAGAAGCAAG	
    462890	    36	 100.0	    30	....................................	AACAGTATAAAAGATGCAGCGCTCGGAAAA	
    462956	    36	 100.0	    30	....................................	TACAGAAAGGCAATCACCAAAATAATACAA	
    463022	    36	 100.0	    30	....................................	TAGCAACGATGCTGAATCTCTGTTCATGTT	
    463088	    36	 100.0	    30	....................................	ACAAGTGGAAACATTAGTATCTATGCAATA	
    463154	    35	  86.1	     0	..............C.....C....A....-...C.	|                             	
==========	======	======	======	====================================	==============================	==================
        11	    36	  98.7	    30	GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC	                              	       

# Left flank :   TTGATAAGCTGACTGCGACGATTAGCGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTCATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAACAGAAGGATTTTCGCAGGTTATTCTAGATTCAGATTATTTTTTACAAGTTGAAAAAGGAATGTAGAGTTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAG
# Right flank :  CACATCTCTCAATCTACTCCAGCTAGAAAGAGTTAAACCATTATGAAAGAGAGGTCCCAACACATGACACAATACCACTACCTCGCCTCAAAAGCAGCACTGAAAACTACGACACACGAAAATAAGACAGATTTTGTATATCAAAACGACTTAGATTTCCTGAGCTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAATTTTCCTACTCCAAATATTTTAACCCAACCTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTGCCGTTAAAAGGTGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTACATTAAAAAAGCTAGTAAAGAAAGTGATACCCTTGAACTATACACTTCATGGAACGGCGAAGAAAATTTCCCTCTGACGAATAAAACAGAATTAGCTATAGAAAATTTAACGCCAGAAAATTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAA

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.30,-0.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
//