Array 1 2974638-2974397 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJB010000002.1 Nonomuraea muscovyensis strain DSM 45913 Ga0436939_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 2974637 28 85.7 5 .......GC.........G.......C. AGCTC C,GA [2974612,2974617] 2974601 28 89.3 29 .......GC..G................ GCGAGCGCGCCAAGGCCGAAGAGGAAGAA 2974544 28 100.0 29 ............................ GCGAGCGCGCCGCCGAAGAGGAGGAGGAA 2974487 28 100.0 35 ............................ AAGAGGAAGAGGAGGAGGAGCCTGCCGAGACCGCC 2974424 28 89.3 0 ....CC.....G................ | ========== ====== ====== ====== ============================ =================================== ================== 5 28 92.9 25 GAGGAAGAGGAAGAGGAGCCCGAGGAGG # Left flank : TCGACGTGGGAGCGCCGCGGCGGGTGGTCTACAACCAGTGGACCCAGTTCCAGGAATTCCCGTCGTTCATGAAGAAGGTCGAGAAGGTCAACCAGGAGTCCGACGAGAAGCTCTCCTGGAAGGCGCAGATCTTCCTGTCGCACCGGGAGTGGAAGTCGACCATCCGCGAACAGGTGCCGGACGAGCGGATCATCTGGCGATCCGAGGGCGCCAAGGGATACGTGGACGGGGCCGTGACCTTCCACGAGCTGACGCCCGACCTCACCCGCGTGGTCGTCGTCCTCGAGTACCACCCGCAGGGCCTCTTCGAGCGCACCGGCAACCTCTGGCGCGCGCAGGGCCGGCGGGCGCGTCTGGAGCTGAAGCACTTCAGGCGGCACGTCATGACGAACGTCATGCTCCACCCCGAGGAGATGGAGGAAGGCGGGTGGCGCGGCGAGATCCACGACGGCGAGGTGGTCAAGGATCACGAGACGGCCATGAACGAGGAGCGCGAGCGG # Right flank : AAGAACCTCCGCGCCGCGCCCGCGCCGCTCCGGCCGCCCGTGGCAGGAGCCGTGGCCAGGGCGCCGAACGTCCGGTACGGCGCCGCCGCACGGGGGCCGAGGAGGAAGCGCCGGCACGTCGCAAGGCGGGTTCCCGCGGCAAGTGAGGCCCGCGCCGATCAAGGAGTGAACACATGACTGTGCAGCCCGCGTCATCCGGCGCAGTGGCCCAGCAATCCTCCGCGTCGGGTCTGGCCGATGTGATCGACACGATCCTGGACAAGGGCCTGGTGATCGACGCCTACGTCCGGGTGTCACTCGTCGGCATCGAGCTGCTGACCATCGACGCGCGCATCGTGGTGGCCAGCGTCGACACCTACCTGCGCTTCGCCGAGGCGGTGAACCGGCTGGACCTCGCCGAGACGGGCGACCAGCAGGGGCTGCCCGAGCTGATGCAGAACGTGACGAAGAGCGGCGCGGCCGGCAAGACCAAGGGGGCCGCCCAGGGCGTCCTGGAGGCG # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGGAAGAGGAAGAGGAGCCCGAGGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 9207-8978 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJB010000003.1 Nonomuraea muscovyensis strain DSM 45913 Ga0436939_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 9206 30 96.7 47 .............................A CCGAGCTCCTCTGGTGGTCCGCTCCTCTGGTGGTCCGCTCCTCTGTC 9129 30 100.0 31 .............................. ACGTCCTGGCGCTGCTTCAGCGGCTGGTGGC 9068 30 93.3 31 .........................G...C TCCAGAACATCCCCTCGCGTGGCGAGGACGG 9007 30 90.0 0 .........................AG.G. | ========== ====== ====== ====== ============================== =============================================== ================== 4 30 95.0 37 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GGTGACCTCCAACCGCCCATCGAAGGTGACCGCGAGCAGGGTGACTGGGGCTTTCTGGCCACGTTTGGCGAAGGACAGTTGACGCCGGTCGTGCACGACGATCTCATGCCGGTCGAGGCCGGGCACGAGCTGCCGGTCGGCCGGCCTCTCGACGACCTTGAACCCGGCCCTTTCCTGGTGCTTCAGGAGCCAGTCCAACTGGTGGCGCTGGGTGACATGTGCCGTGACCTTGGTGGGCTCGCCGTCTTTGCGACGGATGCTGTGCACCGGGTTGGCCGTCAGCCGGAACGCCCACCGGCCACCGGCCGCGAGGCGTGACAGGAACGGCTCGTAGTCGTAGGTGTCCCACCGACCCGTCTCGGGCCAGCCGCCTTGCTCGACCAGGTGAGTGAGGTCGGGCTTGTCCGGGCTGACGATGTAGAGGTAGGTCTCCGCCCGGCTGTTGCGGTCGATCCGCCACAATACCCGCGGCCCGCCGTCGGGCGCGGCCGGGACCCGCT # Right flank : TAGCGCGGCTGCCATACCGCTGGGCCAGTTATACGGAGGATGACAGCGACCGTCCTACGGTCACCCACCATTGGCAGGACCGGAACCAGTCGTGATGATCGTTCCTGGGCCTTGATCAGAGGGGTGAAGGGGCTGGCCGCCGAGGCTTCACTCCTCCGATCAGGGCCCAGGCACTGCCTTCCAGGTACCACAACCATCACGATCACAGGGGACATCCACGTGAGCCACGATGCGGGCATCTTGTTCTTCCTGCTGGCCAGCCCGAGCCCCGCACAAGCGGAGCTCAACACGCAACGGCTGGCGGACTTTCTGCGGGGGTTCTTCGGACCTCTGCTCCTCGTGACGGTCTCCGTGGTGGCGTTATTCTTCCTCTTCACCAAGGAGATCACGCGGTTCGTGCAGTTCGTCGTTGTGGCAATCGTGATCGGTGTGATCTTCTATGTTCCGAACATCATCGAAACCCTCGCGCGCGGAGTAGCGGCGGCTCTTGGCGTGAGTTG # Questionable array : NO Score: 3.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 11231-11504 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJB010000003.1 Nonomuraea muscovyensis strain DSM 45913 Ga0436939_03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 11231 30 93.3 31 ..C..........................G TCGGTTCCGCTTCTGTGTAGGAGAGGCGGAC 11292 30 100.0 31 .............................. GCGCGGTGACGACCGGCGGCCACGTCGGCGC 11353 30 96.7 31 .............................G AGCCGGACACGTACCAGATCAAGCAGGGCAA 11414 30 100.0 31 .............................. GTGCGCGTCGACCACGGCCGCAAGGACGGAA 11475 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== =============================== ================== 5 30 97.3 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : ACGCCGACGATGACATCTACGAGGTTCCCTGGTGACCGTCATCGTGCTCACCCGCTGTCCAGCGGGGCTCCGTGGCTTCCTGACGCGTTGGCTGATGGAGATCTCTCCTGGTGTCTTCATCGGTGGCCCATCCGCTCGCATCAGGGAAGCGCTCTGGCTCGAAGTGGAGGAGTACGCCGACACCGGGCGTGCACTCCTCGCGTACACCACGGACAACGAGCAAGGCTTCACCTTCGAAACGCACGATCACAAGTGGCACCCCGTTGACCACGAGGGCCTCATCCTGCTGCGGCGTCCCAAGGACCCGCCTGCATCGTCTTCTGCTGCGCCCCGCAATTGGAGCAAGGCAGCCAAGCGACGACGCTACGGGCAGCGCTGAGCTTGTAGCGTTCAAGGCACCGAGGCTCTGTGGCCTGCCTGTGAGGATGTCGCATATGTCCGAGTCTTGGGAAGTGCTCGATTTCCGCCCCTCCGTGGGCTAACAGTGCTGGTCAGTGAGT # Right flank : TTGCCGGGCGAGCCCTCGGCGACCCGGCCCACCTGGGCGGTGCTGATCGAGCGCAGCGGCCGTTCGCGCTCCACGGTGGCGCTATGGCTGCGCTGGCTGCGTGAGCGCGGGTTGCTGGGCACCGTGACGCCCGGATCGACGGTGCGCGTTCGCAAGGGCACGCAGTGCGGCACGATCGACGATGGGTTGGGCAACATCGCCGCCGAGTACGTGCTCGCGATTGCGGCCGCCCCTAACGACGACGTGGCCGTCGACGAGCCTCGGCAGGCGCCCGCGCCCCGATCTCAGAAGGCCGTCTTCTCCCCTGTGGATGAATCTCGGACCCCCTCTGGGTTCCCCTCCGAAGGAGGGGAACCCTCGCCACGCTCGCGCGCGCGGCTGCCTCCGCCTGGCAGCCCACGATCGCTGACGATCACCGGCTGAGCGCCGCCACTAGGGCAGCAACGGATCGGACCCTGGAAGATCAACGGGTGCGGGAGGCTCGCAGGGCTCGGCGGCGG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1047045-1045888 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJB010000003.1 Nonomuraea muscovyensis strain DSM 45913 Ga0436939_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 1047044 37 100.0 39 ..................................... CACTTGGTGCTCGTCGGTGGCCACGACGACGTCGACCCG 1046968 37 100.0 38 ..................................... GGCCTCGGCGTCATCATGCACCGCTACTTCGAGCTCGG 1046893 37 100.0 35 ..................................... CACCTTGGCCGCCAACTCGGCCAACCGCTCGTTCG 1046821 37 100.0 35 ..................................... CGCGTTTCAGGGGGTGAACGTGATCCCCGAACCCG 1046749 37 100.0 39 ..................................... GATACGTTTACGCGGCTACGCCGGACGGGTGCCGCAGGG 1046673 37 100.0 37 ..................................... TCGACGACACCGGCGAGGATGCGCGCAAGGATGAGCC 1046599 37 100.0 38 ..................................... GCCGAGTTCTGGTCTGGCCGTGTAGGGCCGTATCTGGC 1046524 37 100.0 37 ..................................... CCCACCTACCGGCGGCGCACCCCGACCATGGGCGGGT 1046450 37 100.0 48 ..................................... CGCCAGGTCGCCGACGAGCTGCGGCTCGGCTTCAAGGGCGAGCGCCTG 1046365 37 97.3 38 .............T....................... AGCTTCGGGGCGCCGTCAGCGTCGGTGACGCCCTCGAA 1046290 37 97.3 38 .............T....................... CCGATCGTCGGCCCGAACGCGGCGCGGCTCTTGGTCGC 1046215 37 97.3 36 .............T....................... CTATGTGCGTGACGTTCTCAGGGGTGATGTACCGGC 1046142 37 97.3 33 .............T....................... GATGCTTAGCCTCGCCAAGGAAGCCGTGGCGAT 1046072 37 94.6 35 .............T......................T ACTGACGGCCTCTACAAGGACGGCGGCGCTCGGCT 1046000 37 94.6 38 .............T..A.................... TTGGCGATCGGCTCGACGAACAGGCGGCCCTTGCCGGG 1045925 37 83.8 0 .............T....A......A.......GGC. | G [1045899] ========== ====== ====== ====== ===================================== ================================================ ================== 16 37 97.6 38 GTGGCGGTCGCCCACCGGGGCGACCGAGGATCGCAAC # Left flank : ATCTCGCCGAAGGCGCCTGCGCGCTGCGCGGTTCCCCGCAAGTGGTCAGCGAGACCATGGCGAAGCCTGTCTCCATCCCGGGCACTGTGCGCCCACAAGCGGTCCCTCACGCACACCCCTTGGTTGGAGGATTCCTGCGAGAGCTGAACTTTAGGAGATGGCGCCGACAGTTTCGCCGGGTTCCATCAAATCGGTGCTAACGACATCGATCACTTCATGTCCAGACAGGGCCGGTCAGCTCGGCCAGACAACCCTGTGTCCCGCAGAGACCAACCATGATCAACAATAGGATCCCTGGAGTTGCTCGGTCAGGGTGCAGTCCCGGCATACCCTTACACCTGTGCTTCGACCGCGCCTGCCGTTCCTGCGCTTCGGAACCTGGAGTGCTCATGCGACACGCGGTAGGTTCCTAAGGAGTTATCACCCTTAATGTTCCTTGATACGTGAATTCGCAGGTCGCCGTGTCGGCGTCAAGAGGGCATATTGCCTGCTCAGATGCC # Right flank : TCGCTGTTTGGGGTTTGGATTCGAGGTCTGGCGTGGTCCACAACTGGTCCACGAGCAGTGAGCGCCAATGAGAACGGGCGGGGCTCCGTGAGACTGGAGACCCGCCCGTTTCTATGTCGTTCGCCCTGGTCAGCGGCCGGAACCGCTGATCAAGATGCTGTGCCCCCTGTAGGATTCGAACCTACGCACCCGGCTCCGGAGGCCGGTGCTCTATCCCCTGAGCTAAGGGGGCCGAACGTGTGACAAGGCTACCAGCATCCGCACACCACTCGGCACACGATAAACCTCTGATCACACATCTCCGAAAGCCGCATGTCACCGCACCGCTACGGGTAACTTGGCGGCCGTGGGCGAGGTGCTTGGCAAGGTGCTGGTGGTGGACGATGACGAGGTCATCCGTCAACTGATCGCGGTGAACCTGAGCCTGGAAGGGTTCGAGGTCGTGACGGCCACCGATGGTGAGGACTGTCTGGAGCAGGTGCTCGACGTCATGCCGGACG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCACCGGGGCGACCGAGGATCGCAAC # Alternate repeat : GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.60,-17.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1055033-1057467 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHJB010000003.1 Nonomuraea muscovyensis strain DSM 45913 Ga0436939_03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1055033 37 100.0 34 ..................................... TACGCCGGCGAAGTCGAGATCGACTTTGACCGGG 1055104 37 100.0 37 ..................................... TTCCAGATGGTCAACGGCTGGCTCGCGAGTAAGTGAC 1055178 37 100.0 37 ..................................... CGGCTCATGCCGCCTCGTGCATGGAGGCGCGCCGGTC 1055252 37 100.0 35 ..................................... CTCCACCACGTCCTCGACCGGCGTCCGCTGGCCCT 1055324 37 100.0 34 ..................................... GACGTCGGCGAGGACGTCAACGCCCCGGGCACCC 1055395 37 100.0 34 ..................................... ATAGAGGGCTCCGGTCAGCGGGTAGGTAGCGGAA 1055466 37 100.0 36 ..................................... CCCGACAAGACGTTCGAGGGCTACGCCCGCGCCATG 1055539 37 100.0 34 ..................................... GGCCTGGACGTGAGCGGCTGGCTCCTGGGCTGGG 1055610 37 100.0 35 ..................................... AGCTCAGGGTCTCCGGCCATGCGGCCTGTGAGGGT 1055682 37 100.0 35 ..................................... GCATCGCTCCACGTGCTGTCCGCCTCGGGCACCAC 1055754 37 97.3 35 .................A................... GCATCGCTCCACGTGCTGTCCGCCTCGGGCACCAC 1055826 37 100.0 36 ..................................... TCGACAGTCAGCAGCTCGGCGGCATGGCCGACGAGG 1055899 37 100.0 36 ..................................... GCCGCGAGCGAGTCGAGATTGCTGATGGTGAGCGTC 1055972 37 100.0 35 ..................................... CGCTCGGCGGAGGTGACTTGGTCGACCGGCTTGCC 1056044 37 100.0 39 ..................................... GGCGTCGGCAGCAATACCGCCCGGCATGTGATTAGTGAT 1056120 37 100.0 34 ..................................... GCCGAGTGGGTAATGGGCCTCCCCTCCGGCCACC 1056191 37 100.0 36 ..................................... GAGTTCATCGCGATCGCCTGGGATCGTTTCGGCGGG 1056264 37 100.0 36 ..................................... ACCCAAGCCGTCATCTCGCTGAACAGGCTCATCAGC 1056337 37 100.0 37 ..................................... GACCCGCGGGACCTGGCCCAGGAAGCGGCCCTGAGAA 1056411 37 100.0 37 ..................................... GGTCTGCTACGCGAAAGATCCGCGTGAACACGGACCT 1056485 37 100.0 37 ..................................... ACTTTGGCCGGTACTTCGGCGGCGGAATGGCACCCCC 1056559 37 100.0 36 ..................................... ACGTACGTCCACGAGCGCGACCTGGGCGGCAACCTC 1056632 37 100.0 34 ..................................... GCGCTCGGTCTGGACCCGCTGATGACCGTCACCA 1056703 37 94.6 35 ............T.........G.............. CATCATGACGCAGACCACCAGCCGAGCCCACGCCG 1056775 37 100.0 36 ..................................... ATCGAGGGCCTGCATCCCAACGACGCCGGCGGCGCC 1056848 37 100.0 35 ..................................... GTGCACGTCCTGAACACGCACCCGGAGCTTGGGCA 1056920 37 100.0 33 ..................................... ACCGGGACGCCCCCACAGGCTTGCGCCGGGGAG 1056990 37 100.0 36 ..................................... GCCACCCCTACGGTGTGCGAGCTCGTCCGAGACGCT 1057063 37 100.0 38 ..................................... CGCTTGGCCTTACGCAACCGCTTGGGCTCGAAGTTCGA 1057138 37 94.6 37 ....................T....A........... AGGGACACCTCCGCGCCGGGCTGGCCTCGGAGCTGGA 1057212 37 91.9 36 ..C...........T.....T................ ATCGTCTTCGGGGGTTGATGGGTCCGCCCGCCCCCG 1057285 37 97.3 36 ...............T..................... ACCGAAGGGACACAGTCGTGACCATCACCGCCCCGC 1057358 37 94.6 36 ..............T.......G.............. GGGCAGTGTGGTGCACCAACCCAAGAACTCCACGGG 1057431 36 75.7 0 ...A..........T....C.C.T...A....-.G.T | T [1057444] ========== ====== ====== ====== ===================================== ======================================= ================== 34 37 98.4 36 GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Left flank : TGCCCGTCGTCCAAGCCCGCCTCCTAGCCCGGCACATCCGCGGCGAACTGCCTGCTTACATCCCCTGGACGGTTGGCTGATGCAACTGCTCCTGACGTACGACGTGGTGACCACCACACCGGAGGGCCGCCGCCGGCTACGGCAGATGGCCAAGCTGTGCGAGGGATACGGGCATCGTGTGCAGAAGTCCGTGTTCGAGATCACGTGCACGGACGCCGAGCTACTCACTCTGCTCGACTCCGCAACACGGATCATCGATGTGTCCGACGATTCTGTACGGGTCTATCGGCTGCCGAGCAACTGCTTCGATGCGGTGCATCGCCTGGGTGTAGCGGAGCCCGCACCCCATCATGATCCGCTCATCCTGTAGTTCGGAACCTGAAGTGCTCACGCGACACGCAGTAGGTTCCTAAGAAGTTATCGCCCAATATGTTCCTTGATAAGTGAATCCGCATATCTTCCTATCGGCATCGAGAAGGCATAACGCCTGCTCAGATGCC # Right flank : TCTCGGTCTTGTCGCCGTCCGTGAGGATGTAACTGATCCTTCGTGGTCGCCCTCCCGGACGGCGAAGACAGAGTTCAAAACCGTGCCGGTGAGCCCGATCAGGTCTTAAGGGCGGCCTCGATGCGGCGATTGATCTGGCCGTCGCGTCCATCGAGACACTTGGCGTACCGCTTGAGCAGGACCTCCACGCTGTTGCCCGCACGCTCGGCTACCACCGTCGCATCCACCCCCGCATTGAGCCAGGTGGATAGGGCGGCGTGACGCAAGTCGTAGGGCCTCCCGGCCAGGGGAGAGGCGACCTGTTGCGGAGCCAGGGCCAAGCGGCGGGCCTCCTCCCATGCCCGCGCATAGGTGGAAGCGCCGAGAATGCCACCGCGCTCGTTGCGGAAGAGCCGGCCGTCAGGGGCTACGCCGAACTCTTCGAGGTGGGCCCGCAGGATGCGGACCAGCTCCGGCGGGATCGGCACGGGCCGGACTTCTCGTTCCTCTCGCTGCTTGAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-19.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //