Array 1 162308-160387 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPH01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712423, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162307 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 162246 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 162185 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162124 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162063 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162002 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 161941 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 161880 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 161819 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 161758 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 161697 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 161636 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 161575 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 161514 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 161453 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 161392 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 161331 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 161270 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 161209 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 161148 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 161087 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 161026 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 160965 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 160904 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 160843 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 160782 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 160721 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 160660 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160599 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160538 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160477 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160416 29 93.1 0 A...........T................ | A [160389] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180919-178815 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPH01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712423, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180918 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 180857 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 180796 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 180735 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 180674 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 180613 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 180552 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 180491 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 180430 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180369 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180308 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180247 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180186 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180125 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180064 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180003 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 179942 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 179881 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 179820 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 179759 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 179698 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 179637 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 179575 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 179514 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 179453 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 179392 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 179331 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 179269 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 179208 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 179147 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179086 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179025 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 178964 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 178903 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 178842 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //