Array 1 126113-126410 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016839.1 Brochothrix thermosphacta strain TMW 2.1564 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 126113 36 100.0 30 .................................... TAATTATGAACCAACATACAAAGAGCTGCT 126179 36 100.0 30 .................................... ACCGTTTGAGTCGTGAAGCTCGTAAGTACA 126245 36 100.0 30 .................................... GCAATTGAAGCCGAACAAATTGGTTTTAAT 126311 36 100.0 30 .................................... TTCACAAGTTGCGCCTAGATTAAGCTTGCA 126377 34 88.9 0 ..........................--.....G.G | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 97.8 30 GTTTTAGAGCTGTGTTAAATTGAATGGTATTAAAAC # Left flank : TATTACTAAAATTTATAAACAGCTAGAGAAACAGTATCATAATAATAAGGAAATCGATCTTATTGCTGATCAATTAGTAGAGCTCCGTCAACTGATAGGCATTCAGTTAAATGACTATGATTTACCGCTACAACTGAATGAAGAAGTAAAACTATCTTCGCTTTATAAGCTGTTTAATGTTACTATAGATGTTGAAACAGAGTCGATTTTGGATAGATTATTACTACTGATTGATCTTGTCGCACAATTGAAAATCGCTCGTATCATTATTTTGAATAATGTAAGGTGTTATTTTGTAGAGCAAGAGCTTCTAGAAGTATACAAGTACGCACTTTATAAAAACATAAAGCTATTACTGATTGAACCAACCTTTAAAAAAGGCAAATTGCAATATGAACGAAAATTACAAATTGATAATGATTATATCGAATTTTGGCAGTAATACCTTCATTTTTGAATCGCGCAACGAGAGCAGTAATGACAAAATTTCATTGTTTGAG # Right flank : GATTGACGTCCATTGATATAATGGATGTCTTCTTTTGTTATCTATAACATTATTATGTTAACTAAAAAAGGAATTTAAAATAACATGACAAACGTTGTTATGCAAGGTATGATAGAACTAGATTAACATTACTTAAAGGTGGTTGGAGGATGACTGGATTAAAAATTAAGCAATTTAAATTAGATAAACAGGCGATTAAGCAAATTAGTGATGACTATATTGTCGATTATCCAACTGTTTATTTATTAAATAATGATAAAGAAGCGTATATCGGCGAAACTGTCGCACTGAAGAATAGAATGCGTGCTCATTTAGCCAATCCGCAGCGCAGTAAACTTACAAAAGCTTATGTCATCAGCCACAATGAATTTAATCAATCCGCCACCTATAATATTGAAACGAAGCTGATTAATTACTTTTTAGCGGATCAAAAATATATCTTACAAAATAAAAGTCAAACGGTTCAAAGTATCACTCATAACTACCATAATAAAGCTTAT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTAAATTGAATGGTATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 1188669-1188952 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016839.1 Brochothrix thermosphacta strain TMW 2.1564 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ============================================== ================== 1188669 39 100.0 41 ....................................... ATCCTTTGCTGACATTGTTGCGAAGACATGAGCTTACAACG 1188749 39 97.4 41 ....................C.................. ATCCTTTGCTGTCATTGTTGCGAAGACATGAGCTTACAATG 1188829 39 100.0 46 ....................................... ATCCTTCATTTAATGACATCGTAGCAGATTTATCCGCTTTACGAGA 1188914 39 89.7 0 ...............G....C.TA............... | ========== ====== ====== ====== ======================================= ============================================== ================== 4 39 96.8 43 ACAGTATGGGACGGAAATTGTGCCAGCAATTGAGTACCA # Left flank : GTACCGCCACTTCTTTCAATTGTTTGAATGCATCATTCATGAAACTACCAATTTGGTCACCCATACGATTCCAGTCAGTACCTTCGGACGTTTCTTTTGTAGATTGTTCTTTATGTTGCTCCCATTCATTGGAATCATTACGTTTGTATTGTGATTGAGCTTTTCCATTTTGCGGTTCCGTACGCTTATTTTGCTCTTGGTTTTGTGAATCTGTACGGTTCACTTTTTCTTCAGCAACAGTTGCGCCCTCTTTTTTAGCCATATTCTCTAATAAAACAAGCGCTTCTTCTGTCGTAATTACACCTTGTTTCACAAATTCTAAAATTCGTTTTCTTTCATTCTCCATTATAATCGCCCCTGTCTGCCTCTATTTATTATGAGAGGTCTTCTCTCTTATAACTCTATTATCAAGCACAACAGCTTTTTTGTCATAGGACCTAAGGTTGATTTTCGTATCGGACTTGCTACTGTCATTGTTGCGAAGACATGAGCTTACAATG # Right flank : ACCCCTTCAAGCAATTGAGTACCAATCCTTTGCTAACATTGTTGCAAATTCATTTGCTTATGATGTCAATTGAGCATCCTTCTATCCATCGTACATCATTCCTTAACTATTTTTCAGTGTCGCGTTCCAATTATATCCTCAAGGTGAAAAATAGCTAGCTATAAAAATTTACCTACTCCCTAAATGATAGCGCCCAAACAAAAAAACGTGCTGAGAAGCTGCCTTCTCAACACGTTATGATTCAATTTATTTCGCTTTAGCTTTTTTCACTGTGGCACTCACGCGTGCCTTATCACGTTCTAGTACTTCTTTTAAATATTTACCTGTATATGATTCAGGGACTTTACAAATTTCTTCCGGTGTCCCAACTGCGATTACTTGTCCACCGCCAGCTCCACCTTCTGGTCCCAAATCAATGATATTATCGGCTTGTTTAATCACATCAAGATTATGCTCAATCACCAACACCGTATCACCATTATCGACTAAGCGCTGCATCA # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACAGTATGGGACGGAAATTGTGCCAGCAATTGAGTACCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //