Array 1 1572311-1576819 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021455.1 Comamonas serinivorans strain DSM 26136 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 1572311 29 100.0 32 ............................. GCCGCCGAGCTGGGCCTGGCCGTCAAGGGCAA 1572372 29 100.0 33 ............................. TCGCCCCGCTTCTGCTGCTTGATGACTGCCGCC 1572434 29 100.0 32 ............................. TATCTCAGACCGACCGCCCCACCCAATCAGCT 1572495 29 100.0 32 ............................. GCACCCTATCCGCCAAAGCCATGCGCGCGCTG 1572556 29 100.0 32 ............................. GCTACATGGGGCCACACATGGGACGCCAAACG 1572617 29 100.0 33 ............................. TAGTGCTGCTGAAAGGCCGGCCCTCAAACTCGC 1572679 29 100.0 33 ............................. ACCGAAACCGAGCGCGCCGCGGCCGTCACTGCC 1572741 29 100.0 33 ............................. ATCGCTACGGAGTTGATCGGCATGCTGCAGAAC 1572803 29 100.0 32 ............................. GCATGCGACGAAGTACTGGGCCTCCTTGCTGC 1572864 29 100.0 32 ............................. ACGACGCTTTGATGGCCAGATACCTGGCCCGC 1572925 29 100.0 32 ............................. ATTCTCGGTCGCAGGGGAGCGGCTGGCATAAC 1572986 29 100.0 32 ............................. GTTGGGATGTCGCCACCCCTGATGGGCATGAT 1573047 29 100.0 32 ............................. CCTTGGCCCGATCCACCACTGCCCCCCGGCCC 1573108 29 100.0 33 ............................. CGCCGGGACGTGAAAAGGCCACCCTCGGGTGGC 1573170 29 100.0 32 ............................. TTCAGGCCCACGGTGAGCGTCTTGCCCGCAAC 1573231 29 100.0 32 ............................. GCTACCCCGAATGCACAAAGGAGCAGGCCGAG 1573292 29 100.0 32 ............................. GCCGCGAGGGCTTGCAGCGTGGGCATGTGGGA 1573353 29 100.0 32 ............................. CAGCCTTGGCGGGCAGAGCAATCAGGCGGGGG 1573414 29 100.0 32 ............................. CCGCCGTGATGCGGTCCACGATCCGGGCAGGC 1573475 29 100.0 32 ............................. GCACCACAGCCGCGCCCGCCAACGCCGCGCTG 1573536 29 100.0 32 ............................. GCGACGAAATCAACGGCCACAGCGACTGGCGC 1573597 29 100.0 33 ............................. CTGCCGGCTTCAATTTGCTGCCCGCTGGGTGAA 1573659 29 100.0 32 ............................. GTGTTGGACCTGTGCGAGCGCGGCCGGCAGAT 1573720 29 100.0 42 ............................. CGTGCGCGGCCTGGCCGCCCTGCTGCGCCGCGCCCGCCGCCT 1573791 29 100.0 32 ............................. GACAGCGACGCCATGGATTCCGTCAGCATCGC 1573852 29 100.0 32 ............................. CCGATGCGACGTCACACGTCGCATGCGAAGCC 1573913 29 100.0 33 ............................. CACTACCGGCCCGAGCTGGAGGGCACCACAGCC 1573975 29 100.0 32 ............................. GGTGGCGAGGGTGTCGTCACCCAGGTAGAGGG 1574036 29 100.0 33 ............................. CACTACCGGCCCGAGCTGGAGGGCACCACAGCC 1574098 29 100.0 32 ............................. GGTGGCGAGGGTGTCGTCACCCAGGTAGAGGG 1574159 29 100.0 32 ............................. ACCGTGATCGTCCGCAAGTATCTGCCGATCAT 1574220 29 100.0 32 ............................. ATTTCGCGGTCGAGGGTAACCTGCGGAGACTC 1574281 29 100.0 32 ............................. TCCTCGCAGCTGTGATGGATTGCGACTTTCAT 1574342 29 100.0 32 ............................. CCCGCATCCACGATTGGCGTTGACGAAATGCA 1574403 29 100.0 32 ............................. CATGCGCTCCACGCTGGCCAGCTCGTTGTCCA 1574464 29 100.0 33 ............................. ATGGGTGCGATGTTCTGCAGGTAGAGCAGCAGG 1574526 29 100.0 32 ............................. CACTGGGACAAGGTCGGCCCCATGCTCACCGC 1574587 29 100.0 32 ............................. TCCGCTGGTACAACCCGGCGGAAGCGGAAACG 1574648 29 100.0 32 ............................. CAGTCCACCGCCCCGGCGGCACCGGGAGTCCT 1574709 29 100.0 32 ............................. GCCGCGCCCATCCCGTAGATGGCGGCCATGAC 1574770 29 100.0 32 ............................. CCCGTCGAGGAATTCCGCTTCACCACTGGGCC 1574831 29 100.0 32 ............................. TGTCACCGGCGCCAACATCATTCAGGTGGCCG 1574892 29 100.0 33 ............................. TAACCGATCACGCGAGGGGCCGCACCAGCCAAC 1574954 29 100.0 32 ............................. GTTTGACCTTGGCCGTCAGCCAGGCCTCAATC 1575015 29 100.0 33 ............................. CGCACGGCCACCCAGACCACCGTCTGCGTGCGC 1575077 29 100.0 32 ............................. CACCCGAAGGCGTTGTCTTTGGTGCTGAGGAC 1575138 29 100.0 32 ............................. ATCTGCCGGGTGTCATAGCCGGCGTGCAAATC 1575199 29 100.0 33 ............................. TCGGGCGACTCCGCGGCAGCAATTCGCGCCGGC 1575261 29 100.0 32 ............................. CAGATTGGGCTTGATCGGCTGACATCCCGACC 1575322 29 100.0 32 ............................. CCCCCCGGGTGACGCTGCCGCCACCGCCGACG 1575383 29 100.0 32 ............................. TGCACACCGCGGCGGGCTTCGCTTTCGCGGCG 1575444 29 100.0 32 ............................. CCTGTGATCAGCTTTGTCGTGAACCCCATCGG 1575505 29 100.0 32 ............................. GAGGACATGGCGCTGGACTCGCGCATGGAAAT 1575566 29 100.0 32 ............................. GCGGAGTGGTGGTACGACGCGAGCGAAGTCGG 1575627 29 100.0 32 ............................. CCGTAGACCACATCGGTGGCTTCCTTGAGGTG 1575688 29 100.0 32 ............................. GCCATCTCGATGGCACGGGCCGACTGCTCGAC 1575749 29 100.0 32 ............................. AAGAGGGCATAGCGGTCTTGGGGCATGTCTTT 1575810 29 100.0 32 ............................. CCGTAGACCACATCGGTGGCTTCCTTGAGGTG 1575871 29 100.0 32 ............................. CGTTCGATGCCAACGGCGACCCGCTGGTGCTG 1575932 29 100.0 32 ............................. TCGAGAATCCCAGGGCTTGGGTTGCGTGGGTT 1575993 29 100.0 32 ............................. CATCGCGCAGTGGCCATTGAGCGCGAGACGTT 1576054 29 100.0 32 ............................. TCGGCGTTGATGTTGCCGCTGGCGATTTGGCC 1576115 29 100.0 33 ............................. TTCTTCAACCTGCCCACGTACCCCGCTGCGAAG 1576177 29 100.0 33 ............................. ATGCCGATGACGACGATGGCGGCAATCATTACC 1576239 29 100.0 32 ............................. CACATCGGGTTGTCGCGGATGTCCTCGCCTGT 1576300 29 100.0 32 ............................. GGTTTACCCTTGGACGGCTGCGCTGCTGGCTC 1576361 29 100.0 33 ............................. GCCTCCACCATCCATTTCGAGCTGCCGGCCGGC 1576423 29 100.0 32 ............................. GCCGTGGTCTTGTCGCGCGGCTTCCGCTGGAC 1576484 29 100.0 32 ............................. CCAGCAGGCGCTGAGCGCGGGCGAACTCGGCT 1576545 29 100.0 32 ............................. TCCATCTGGCGTTGGTGATCGAATTTCCGCTC 1576606 29 100.0 32 ............................. GTGACATCGACGCCAGTATCCACCGTCATGCC 1576667 29 96.6 33 ...........................T. AACATCCGCCCCGGCATCAGCGGATTCTCGGTG 1576729 29 100.0 33 ............................. CACGAATCGCTGGTGGATGTGCCCAATGGCGGC 1576791 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================== ================== 74 29 100.0 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : GGCTGCTGGACCGCATCATTCCGGACATCGAGGAAATCCTGTCGGCGGGAGAGATCCCACGCCCGACCGCTCCGGATGGCGCTGTCGGTCCGGCAATCCCCAATCCCGAAAGCCTGGGCGATGCTGGTCATCGTGCTTGAAAACGCGCCACCGCGCTTGCGCGGGCGGCTGGCGGTGTGGCTGTTGGAAGTCCGGGCCGGTGTCTATGTCGGCCAGTATTCGCGCCGCGTGCGCGAGCACATCTGGTCGCAGGTCGTTGAGGGCATCGAGGGCGGCAATGCAGTGATCGCGTGGTCGGCGAAGAACGAAGCTGGATTCGAGTTCAAGACCCTGGGCAAGAACCGCCGCATGCCGGTGGATTTCGATGGGGTGCAATTGGTGAGCTTTCTCCCATTGCCGCCTGCAGATGCTCTTTAAAAAGACAGCTTTCAACACTTGTGAGGTTTGGTGGAATTTTTCGACAGGAGAAATTTCATGAAAATCAATGAGTTGGAATTGGT # Right flank : GGACTGCGCCGCCTGTAATCCAGCCAGTGGGGGTGGGCTCAGGCGGTAGTGCAACAATGCGCAGCTGTCACGCAAACCTCGTGCCATTCCCTGTCTGGCGTCTGCCGGAGCCCTGATTTCCCATCCCTGCATGTCATTGCCCTACGAATTGCTTTTGGGCTGGCGCTACACGCGCGCCAGCCGTTCGGCCAGCCGCAATGGCTTCATCTCCTTCATCTCGGGCGCGTCCATGCTGGGCATTGCGCTGGGGGTGGCTGCGCTCATCATCGTGCTGTCGGTCATGAACGGCTTTCAGAAGGACGTGACCGGCCGCATGCTGAGCATCCTGTCGCACGTCGAGGTGTTCGCCCCCGATGACCAGGCCATCCCCGATCTGGCGCGCACCTTGCGCGAGACCAAGGCCAACCCCGAGGTGGTGGGTGCCGCGCCGTTCGTGGGCGCACAGGCGCTGGTGGCGCGCGGCGAGGTGATGAAGGGCGCGCTGGTGCGCGGCATCGACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2769208-2769784 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021455.1 Comamonas serinivorans strain DSM 26136 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2769208 29 100.0 32 ............................. AAGAAAGCCCCGGCTGCGCTAACAGTCCGGGG 2769269 29 100.0 32 ............................. GACCCAAACTACAACAGCAAGGCCTGGGATTG 2769330 29 96.6 32 ...........................G. CACGGCGCTCAGCGTCACCGGCTGCCGCGTGG 2769391 29 100.0 32 ............................. GCTCCTTCAATGACGGGGACATCATCTTTGTC 2769452 29 100.0 32 ............................. CTGAAGCTGACGCCCGCCTACGAGGCCCTGCT 2769513 29 100.0 32 ............................. CAGCACCAGCGGATGCGGTTCATTCTGAAAAG 2769574 29 100.0 32 ............................. ATGGGCGTGACCACCAGCGGATCCACCAGGGT 2769635 29 100.0 32 ............................. CCACTTCAGGGAGAACAGGGTTTTACCGGTGC 2769696 29 100.0 32 ............................. GGCGTCGGTCGATTCATCGGCAAAGTGACCCG 2769757 28 82.8 0 ......................-..GTTG | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.9 32 GGTTGCCCCGCACACGCGGGGATAGACCC # Left flank : GGAAAGCAGTTCATACTGCTTCTCACTTCGCCAGACCAGCCCGCCTGGCAGTGGCTTTGCACGGGCCACCTCGTCAAGGCGGCCACGCACGTCGGGACACAGGCGGACCAGGCAACCGACGCCAGATCGAGAACGCCTTCATGCCGCTGAACCACTCCGATCTGCTGCATTGCACGGCTGGCTGCTGGCAGGGGCTCTTGCCATCGGCGATGGTTGGACGCTGTGCATGCGCCCCGCATGCGTCAGGGGTGCGCCAACGCGTGTGGTCAGCCATCGCAGACTGGCACGCGCATGACCCGTGGCTGTTTTTGGCTAAGGTCTGGCGCGATCTGCATGCCGCTGGAGGCATTGGCGGGTCTCTCTGCGGGAGCCGCCGAGCAAGCGAGTTGAGATGAACGGCATGGGTGGTCAGGCGCCGAGCGCCGACTTCTGAAATCGATCCTTAAACATTGAATGAGAATGACGGATTCCTTTTGCATGACAACGGGCTAGATGCAAGA # Right flank : GCCCCGCAAACGGGAACAGTTCTCCGCTGTGTGCCTGACCGCGGTCAGTTGAGCAGCTCGTCCGGCAGGTCGTCGGCATCCATCACGAAGCCGGTCAGCGACTCGTCGCAGAACACGCATTCGCTGAGGAACTGGCGCAGGCTGCGGGCATGGAACCAGGCCAGGCCCGACTCGGGGTCGCACAAGGCGTCGGCCAGGGCGTCGCGGTCCTCTTCGCTGCCCTCGAGCTCGGCCTCCTCCAGGTACTCCTCCAGGCTGGTGTTGCTGGCGTAGAGCTCGTGGTCCAGGCTGGCGATGAAGCCTTGGTACTTGCCCGCCAGCACCTCGACGAAGACCTGGCCACCGTAGCCTGCCCCGATGGGGAACAGCACCTCGCGGAAGATGAAGTCCTCGAGCTGGGCGTTCAGGTCATCGAACGGGGCCTCGGCGCCCAGCGCGTACAGGTGCCGCAGGTCTGCATTGCCCTCGGCGTCGTCCTCGCCCACGGCCAGGCACTCGTC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGCCCCGCACACGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 3 2944897-2945174 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021455.1 Comamonas serinivorans strain DSM 26136 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2944897 29 96.6 32 ..........T.................. ATCAAAACCACGCTCGCCGACAAGATGGTGGG 2944958 29 100.0 32 ............................. TCACCGGACGAATCACGCTTGGAGTCGTTCGA 2945019 29 100.0 32 ............................. GTGCCGAAGCTTGGGAAAGCATCGCGCAAGCG 2945080 29 100.0 33 ............................. AGAGAGGCAAAGCCCTGTCACACCATCACCGGT 2945142 29 86.2 0 ........T.....T........G.C... | GCC,G [2945162,2945172] ========== ====== ====== ====== ============================= ================================= ================== 5 29 96.6 32 GGTTGCCCCGCACACGCGGGGATAGACCC # Left flank : GCCTGGTGCGCCGCGCCATCGAGGCCCATGCCGTCACCCTGCTGCAGGTGGACCACGGCTCGGACGTGCGCTGGCGGGTCAAGCTGCCCCAGGCGCAAGCGGCCGACTGGCTGGACGCGCTGGCCAACCAATGCCAGGGGCGGCTACAGCGCATCGAGCCGGACTGACGCCGCTGGGGGGCCTGGACCTGGCGACGCGGCGCTGGCGCGTGGACCTGATGGTGGCGGCGCGGGCAGGTGGGTGACATGGGGTGGCAGTGCCGGTTGCGGCTGGCCGCAAGCCGATCGGCCAGCGCGCTCTTTGCTGGCCTCAAGCAGCACCATCCGCTGCCCATGTGCATGACCGCGGCGTGTGCCACCGAGCCATCGCGTGTGCACGGCAACCGCGATGACGCGCATGGGTCTATCCCTGCGTCGTGCACCGACGCCTGAAATCGCTCCTTGACAATTGAACGGGGGAATGACGAATTCCTTTTGCATGACAACGGGTTGGATGCAAGA # Right flank : CATGCAGCACATCGGTCATGGGTATCAGTCGTTTCCCGTCTGTTTTTCAACGGAAAACAGCCCATACCCCATCACAGCCCGCGCGGATCCGGTGGTTCGGGTTCGGCCGGCGGGGGCGCCTGGGCCGCGTCCAGCGCGCGCTGGGCCAGCTCGGCGCGCAGCGCGTCCAGCCCCTGGCCGCTGGCCGCCGAGACGAACAGCCGCGTGACCATCTCGCCGTCGACCTCGAACAGCCCGCGCAGGCTGGTCGGCTGGCGCTCCGGCTCGATGAGGTCGAGCTTGTTGAACACCAGCAGCTGCGGCACGGTGTCGGCGCCGATTTCGGCCAGCACGTGCTCCACCTGGTCCATCTGTTCGATGAAGTTGGGATTGGATGCGTCGACCACGTGCAGCAGCAGGTCGGCGTCCGCCGCCTCCTGCAAGGTGGCCTGGAAGGCATCGACCAGGCCATGCGGCAGGTCGCGGATGAAGCCCACGGTGTCCGACAGCGACACGGCGCG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGCCCCGCACACGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA //