Array 1 41214-43564 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXCJ010000024.1 Prevotella denticola strain SCHI0027.S.14 Contig_24_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 41214 47 97.9 30 ...................T........................... TGCCTTAATTAATTAATTATTAACTATCAA 41291 47 97.9 30 ...................T........................... TTGCGTACTCTTTTTGTACGTTCTCCAAGT 41368 47 97.9 29 ...................T........................... AGTAGGAACAGAGGAAGGGATATACTTCC 41444 47 97.9 29 ...................T........................... ATTAAATAAATCTATGATGCAAGACCTTA 41520 47 97.9 30 ...................T........................... CTTGTTGCATAATACGCATTGTTTTGACTA 41597 47 97.9 30 ...................T........................... AAAATAATCATAAACTACACAAAAAATCAC 41674 47 97.9 30 ...................T........................... GTGACAACGTCGTAACGACAAACATAAGGC 41751 47 97.9 30 ...................T........................... TTGCCGCTGAGCAGCAGGCGTAGAATAGTC 41828 47 100.0 30 ............................................... TTATGCCGGGAGAGTTACATACAATTGCAG 41905 47 100.0 30 ............................................... TACGTAGAGGGTTTTGTTGAGGTTGGCGGC 41982 47 100.0 30 ............................................... CACCTTTCGGTACGTTGTAGTTGTCAACTG 42059 47 100.0 30 ............................................... CACAAATTGAAAAATTATCATTAAATTTGT 42136 47 100.0 30 ............................................... CGTTACCGTCAATATCTTTATACGCTGCTT 42213 47 100.0 30 ............................................... AGATGGGGTAATCTGAAAAAGAAGATCTAC 42290 47 100.0 30 ............................................... GTCTGGTATAGAACAGGCAATCGGGCATAC 42367 47 100.0 29 ............................................... AACAAGAGAATCGCCAGTAACAACACCAT 42443 47 100.0 30 ............................................... TGTTGAAAGAAAAGCAAAGGCAACAGATAA 42520 47 100.0 30 ............................................... CCATCTTGTCCGTTCCTACCTGCTGCACTA 42597 47 100.0 29 ............................................... AAATATATACAGGAATCAATGACTACTAT 42673 47 100.0 30 ............................................... GGTTTGACAGATGATGATCTGCTTGAAATT 42750 47 100.0 30 ............................................... AAATAGGATTGTCGAATCCGCCGATAAAAT 42827 47 100.0 30 ............................................... GAAAACGCCTTTGTGAAATGTTCAGATCCT 42904 47 100.0 29 ............................................... TTGAAAAAACACGCCTCGAACTCAAATCG 42980 47 100.0 30 ............................................... GTATCATCAAGCTTGATGTCAGTAACGAAA 43057 47 100.0 30 ............................................... ATCTATCAGCCTAGTATAAGTTTATCTGGG 43134 47 100.0 30 ............................................... ATTTATACGCCTCTATCTGCTCTGTAAGCA 43211 47 100.0 30 ............................................... CTTAAAGAAGTACTTTGTCAAGAGAGTGAA 43288 47 100.0 30 ............................................... AGTATCTGAACTGTAAGGCTCAACTAATTA 43365 47 100.0 29 ............................................... TTTAATTGGAGAAATAATCGCCCCAGCTT 43441 47 100.0 30 ............................................... GATGAAGACACCTGTAGGTAAACAGTCACA 43518 47 91.5 0 ...........................................GTTG | ========== ====== ====== ====== =============================================== ============================== ================== 31 47 99.2 30 GTTGTGAATTGCTTCAAAAAGTGTATCTTTGCAGTAGCAAGCACAAT # Left flank : CAGTGTCTTGCTGTATAGGATAGTGACTGGATTAAACCGGCCTTTCCTGCAGATGTGCTGATGCCAGACACTTATGGAGTTGCCGACAGACACCGGGCGTGTTGATGGCCCGCACCATGCCATATATTGCCGGGAGGGGAGCCAACTTGCAGCTGGCGAAGAGCTGTGCCGGCAGAACTTATTTCATCAGGAGATTACTTTTCCGAAGACAATGCGGAATGGTCTGTTCAAAAGAGATTGCACAGGGGGATCATGCTGTTTGAGTTTTATCGGACAGCATTCAATAAACATAAGTGCAGGAAACGGAGATAATTTATGGATTCGGCAAACGGTCATCCCTTCGCAGCAAGCCTATACGCTCTACGCAGCAGCCAACTACACATTCCTGAAAGCCAACTACGCCATTCAACTGAAAGCCAGGAATAAATCTGTAAGGCAGCAGGCAAGACTGACCAAAAGTCAAAACACGAGTTTAGGTTTACAAAGTCGTCCGTTTGGTG # Right flank : GATATAAATCAATAAACGTCCGACACATCGATATTTTTTCCATGAAATGCTTGACAAACTGAAAAAATCGTTGTTGCAACACATACCGGGCAGTAGAGAAAAGGGGGTCAGTCCTAAAACCCAGTTGCAAACCTACTTCTCTTAAGCGCATAATTTCATAAGTATTTATTACCTTTGCATCATGAAGAGTGACCAACTATTACGTTGCATCTTTCCAGATGTACTTGCCGACTACTTTGATGTTGTCGATATTCAAGAGGGTGTTTCCCAGTTTGACTTTTGGCTTGACGAGCGTAACTTTATGGAAAAGTCAGACCATAAGTTAGGCACTGTAAGCAGTTATGGTTTTACCAGCGAGCGTGTAATTCAGGACTTTCCTCTTCGTGGCAAAGCCGTCTACCTCCATGTTCGCCGTCGCAAGTGGCGTGACAGTTCCAACGGAGAGATATTTACTTATTCATATGATGACTTGACGGCTGAGGGCAGTAAACTATCCCCCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTCAAAAAGTGTATCTTTGCAGTAGCAAGCACAAT # Alternate repeat : GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 788-3217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXCJ010000005.1 Prevotella denticola strain SCHI0027.S.14 Contig_5_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 788 47 100.0 30 ............................................... TCAGCATAAATAGACGACATGCCAATTAAA 865 47 100.0 29 ............................................... TAAGAGACAAATTACCGGTCAAAGCGCCT 941 47 100.0 29 ............................................... CGGATTCACGAGTACATACGTACGCATTA 1017 47 100.0 30 ............................................... GTAGGAACAGAAATAGGAACATATTCCTTT 1094 47 100.0 30 ............................................... CGGACTGGCCGTCAACAACGTCTGCACCCT 1171 47 100.0 30 ............................................... ATTCGAGATGAGGTCCTCTGCTTCGAGGTC 1248 47 100.0 30 ............................................... AGTTCAAGAATCTGAAGGAGGACATTCGAC 1325 47 100.0 30 ............................................... TCAAATGCGTTTGGCAGAAACAGGTAACGT 1402 47 100.0 30 ............................................... ACTCGATAAGGTTATACTCCTTTTCCATAC 1479 47 100.0 30 ............................................... CGCTTGGTCATGGCATGGGTAACAGGACAA 1556 47 100.0 30 ............................................... CGCTTACTCCGAATTGCAGACGGACTGGAA 1633 47 100.0 30 ............................................... AAAATGGACAGTCCGTCGCTGTCGACACCG 1710 47 100.0 30 ............................................... CGGTAGAGAAGAAGTGAGTAGCCTCGGCAG 1787 47 100.0 30 ............................................... CGTTGCCGTATAGTTCGATACTGTCTGTCA 1864 47 100.0 29 ............................................... CTAAACTTAAAGTTTCGACAACGCTTAAT 1940 47 100.0 30 ............................................... AACTTAAAGTTTCGACAACGCTTAATTGCC 2017 47 100.0 30 ............................................... ATATTTAACGGCTGTCCCGTGGTTCTGAAA 2094 47 100.0 30 ............................................... TGAGTACATTAAAGCACAGTTAGCGATATA 2171 47 100.0 30 ............................................... AGCCGTCCGCAACGACCTTTGTCGCCTGCT 2248 47 100.0 30 ............................................... ATTATGCCTTAACGGTTGTTTTCTGCCTTT 2325 47 100.0 30 ............................................... TATAGTTGAGTACCCCCGAGTTTGCAAAGT 2402 47 100.0 30 ............................................... CGGCAGCAAATGGCACAGAACTTTCTCTGC 2479 47 100.0 31 ............................................... ATAAGAATAGCGGTTTGTAAACAAAGCCGTT 2557 47 100.0 29 ............................................... TCGTATGCTGCAACAGTGGCGCAAGACTT 2633 47 100.0 30 ............................................... ACAGAACCCACAGAGGTCACGACCGTAACC 2710 47 100.0 30 ............................................... CATGCTCTACGACTTCATCTACTTTACGCT 2787 47 100.0 29 ............................................... AGTACGTCTTTTGTTTATCTCTACCACGC 2863 47 100.0 30 ............................................... AAGTGTTTCAAGAAAATAATTCTAAACCCT 2940 47 100.0 30 ............................................... AGGCGTATAACGTAACGCAAGAGCATATTG 3017 47 100.0 30 ............................................... CTTTTCAAGCCTACCGATTATATCCTCTTT 3094 47 100.0 30 ............................................... CGCAAGCAGATTGAGGTCGTTAAGTCGTTG 3171 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 32 47 100.0 30 GTTGTGAATTGCTTCAAAAAGTGTATCTTTGCAGTAGCAAGCACAAT # Left flank : GAATATATACCCTTTAGATACAGCAATGGTGACACGCGTAAGCAGTTGCTCGCCAGGGCAAAGTTCATATTGACCAAGCACAAGACCAAGTGGACTGAAGCACAGAAAGCCAGGGCGGAAATCATCTTTGAACATTATCCTACACTGAAAAAGGCATATGATCTGGCTATGAAACTTACCGATATTTATAACATCAAGAGCATCAAGGATGCTGCAAGACTGAAGCTGGCTAAATGGTTCAATGAGGTTGAAGAGCTGGGAGTGGACAATTTCTACACGGTGATTGACACGTTTGAAAATCATTATCAAACCATACTCAATTTCTTTGTAAACAGAGCAACAAATGCAAATGCTGAGTCATTCAATGCCAAGGTTAAGGCATTCAGGGCACAGTTCAGAGGAGTCACAGATATTCCTTTCTTTTTATATAGGCTTATGAAATTGTGTGCTTAAGAGAAGTAGGTTTGCAACTGGGTTTTAGGACTGACCCCAGACAATCT # Right flank : TTGAAAATAAGTATTGCTCTGATTCTCAGTTAGTAACATTGTTTTTGTGCAAAATAAAAACTGCAATCTAAAAGAGTCCTATTGGTAATGATAGGACTCTTTTTCTTTTAGAATAATTCAAGTTGCTGCCCAGGAGCGTTGGGTGTTTGTGCCTGTGTCCCACAAAAAAGCTCTATCTCACCAAACTGTTTGTCTGTAATAACCATAATGCAAACATTACCAGAATTAGGCATAAAAGACTTTACTCGCTTCACATGTACATCCGCATTCTCTCTGCTTGCACAATGACGAACATAGATTGATAATTGAAACATAGTAAATCCATCTTTCATCAAATCTTTCCGGAAAATAGTATAAGCACGCTTTTCCTTGTTTGTATTCGTTGGAAGATCAAAAAAGACCATTACCCACATAACCCTATATTCGCTAAGTCGTTGCATCAAAGAAAAGAAGGATAAGAGATTTCACGAGCTTCCCCATTATAGCACTTCGCAAGACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTCAAAAAGTGTATCTTTGCAGTAGCAAGCACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 202818-205173 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXCJ010000003.1 Prevotella denticola strain SCHI0027.S.14 Contig_3_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 202818 37 97.3 34 ............A........................ AATTGACCAAATTGTAGATGTGGACGAAAACAAC 202889 37 100.0 33 ..................................... AATTATGGAAAAGAAGAATGTTATCGAGAGTTT 202959 37 100.0 36 ..................................... TATTGCTATTCAGGACTACTCACCTAAAATAAAGGA 203032 37 100.0 34 ..................................... AGCGTGAAATCATGGAGTTAACAAAAAATTTCGC 203103 37 100.0 37 ..................................... GTTATTAAATTTCTCTACCTCATCTGCATGACGTTGC 203177 37 100.0 33 ..................................... AAAGGCACTTTATTTTATCTTTGACTTATTGCA 203247 37 100.0 38 ..................................... AGTTCGGGTCGAAGATCCAAAAAACCTAATAAGGTTGA 203322 37 100.0 38 ..................................... ACCGGAATTTTATTCCAGAAATAATGGAGATTACAAGA 203397 37 100.0 33 ..................................... TAATATATCCTTGTTGTTGCAATGATTTTACCC 203467 37 100.0 36 ..................................... CGTGCGTCTTGTCGTTGTCATGCTTGCTTCGTTCTT 203540 37 100.0 36 ..................................... GTCGGAGGGCTATCAGGTTGTCGGGGATTCTTCTTA 203613 37 100.0 29 ..................................... TTGCAACAACAAGGATATGCGCGCGGCAA 203679 37 78.4 37 .CAGCTG..T.A......................... TTTGCCGGAGGCTTTGGCAGACTTCAACGAATCTGCC 203753 37 100.0 34 ..................................... AAATAAATTTTAACTTAAGCCCTCGACAGCACGG 203824 37 100.0 38 ..................................... CAGGATGCCCGAAATAATTTTAACTTTAGCCCTCGACA 203899 37 100.0 34 ..................................... TTTGCATTCGTTGCAGGAACGCCAGCTAATGAGA 203970 37 100.0 39 ..................................... TGTTAGGAAGAATTATCCAGAAGTCGAAATGATAAAGCC 204046 37 100.0 36 ..................................... GTTCGGGTCGAAGATCCAAAAACCTAATAAGGTTGA 204119 37 100.0 35 ..................................... AATCTACCAGCAGACGGTTGCGAAAGTAACGAGGG 204191 37 100.0 35 ..................................... GTCAGGACGCTTCAAAGAAGCTCTTGCTATTATAA 204263 37 100.0 38 ..................................... CTTATCGATTCTTTGAGGAAAAAGAATCATTTTCTTGT 204338 37 100.0 36 ..................................... TCCTGTACAGATTTGGAGGGACAAAAACGGGTAGCA 204411 37 97.3 38 C.................................... TAAGGCTTGAAAATATGCTTTAATGCCAAATGCTGCCT 204486 37 100.0 35 ..................................... CGCAAGACAGGTAAATCTATCGGTGAACTCAAAAA 204558 37 100.0 32 ..................................... TTCGTCGACAAGCCGTTCATCAAGAACGCGGT 204627 37 100.0 39 ..................................... ATTATTAAGTTTTTTATGGGGTCGTCGGCGAGCGAGGCA 204703 37 100.0 34 ..................................... AGAGTTTCGAGAAAGCAGCCATCGCTCGTTTTGG 204774 37 100.0 37 ..................................... CAGCATCGGGTCGATGTTCTCCTCTTTCAGCTTGTCG 204848 37 100.0 37 ..................................... ACTTTGTAAAGCAGTGTACGTAGGACCGAACAAAGAT 204922 37 100.0 37 ..................................... GGCAAGAACGTTACGGTTCTTAAGAACATTGCCACAA 204996 37 100.0 32 ..................................... TCCGGACTGTCTCTTCGTCCGGGGCTGTGAAG 205065 37 94.6 35 CA................................... AGTTCATGAAGTTGGGGTTCTTGACCGTTGTAAGG 205137 37 94.6 0 CA................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 33 37 98.9 36 GTCTTAATCCTTGTTTTAATGGAAGATACTCATTGAG # Left flank : TTCTCCGAGATAGTCTGCCCCGCAGCCGGCATCACATCATAGAAAAAGCCGTTCTCCACTGCCGGGCCGAAGCCGAACTGAATGCCCGGATAGAGTTCCTGCAATGCCTCGGCAAGCAGATGGGCAGAGGTGTGCCAGAAAGTGTGCTTGCCTTCTTCGTCATCGAACTTGTAAAGTGCGATGGTCGCATCTCCATTGATGGGACGGTTCAGTTCTGTCGTTACGCCATTGACACCGCAAGATACAACGTCACGGGCGAGAGCCGGCGAAATACTCTCGGCAATTTGATAACCAGTCACCCCCTGTTCGTATTCACGAACGGAGCCGTCTGGGAAAGTGATTTTAACCATACTACAAATTAGTTTTATAAATCAAATGTTGTGGCAAAGGTACTACTTTTAATTTATAAATCATAATTTTTTTGCCCCCAAAGGCTCTTCTTCCGAATCCTTGTTCTAATATTGAGTGAAGGTTGAGGACGCAAAGCGAATTCTTGCAAA # Right flank : GAGTAAAGACTTGTATTCCTTTATATGCCGCAGCCCCATGCGTGTAAGACCTAAAAATGCTTGAGGAATTAAGAGAAATTAACCATATTCCAAGCGAGTGCAAAGGTACGAAAAACTGTGCAGAAAGTCAAAGATCGATGCGTTAAATATTCTTTATGGAGGAAGCATTGCTGCTGCTTTCCCTCATGGGGAGGACATTCTTCCCTGTTGTAGAAGGTATCCTCGCTGCCATCTTCAGAAGAACAATGTGTTGCGCGAACGGATGATGACATCTATGCTGATGTCTTCACCGATGATCTGCATTGCCCGGATCTGATCGGTGGAGACAGGACAGACGATGATGCTGTCGTGGTTGTCGTAAAGCGACTGCACCTCGGCAAGGTCTCTTTTAATTTCATCGTAGACGGTCTTGTCGAGGTCGGCAAGGAAGATGGAACGCTGGATGCGTGTGCATCCTTTCCGTTCCAGGTATTTTGCGATATGATAGCGTACCTTGTCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTGTTTTAATGGAAGATACTCATTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //