Array 1 27826-28709 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKNZ010000023.1 Cronobacter malonaticus strain MOD1_GK1358 cmalGK1358_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27826 29 100.0 32 ............................. ATTACCAGGGGGGATATTGGGAGTATCTTCAG 27887 29 100.0 32 ............................. CCGATACCGGCGATTAATCGGGGGACGGTGTA 27948 29 100.0 32 ............................. CAGATATCATGCTGGCAGATTTCAGCGGGAAA 28009 29 100.0 32 ............................. TGTCGCTAACATAGTTTCTCCTGAGCGTGACA 28070 29 100.0 32 ............................. GCTGCGCAAATACGAGGCAATCGTATTAATTA 28131 29 100.0 32 ............................. CTCGAGGCGGATTTTGTGCCGCTACAGCTCAC 28192 29 100.0 32 ............................. GTAAAGGACCCGAGCGCCCGGAAATTGAGTTA 28253 29 100.0 32 ............................. ATGGCGCTCTCTACAATCTGGAGGCGATAAAC 28314 29 100.0 32 ............................. TGGATATCACCCGGCAATGGCCGGGGAACAGC 28375 29 100.0 32 ............................. CGCCCCTCTCGGGGCGCGCTCCTGTTAGTCTT 28436 29 100.0 32 ............................. CTTCGGCAACCGGATCGGCTTTGCCTCCATAT 28497 29 100.0 32 ............................. ATGGTCGCGCAAAGCGCCATGCGGCCTACACC 28558 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 28619 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 28680 29 93.1 0 ...........TT................ | G [28697] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACACCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : GCCCAGGTTCTTCACGCCTGTCAATCGCCTCCCCTTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCAGGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATCAAGGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGGGAAATGACCGCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 55482-57221 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKNZ010000023.1 Cronobacter malonaticus strain MOD1_GK1358 cmalGK1358_contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 55482 29 100.0 32 ............................. TTCGGGCCAATTCTAAAAGGCGTTCCCTTTGT 55543 29 100.0 32 ............................. CCTGCCGCGCAGCACCGACAGCGCCGGTACAC 55604 29 100.0 32 ............................. CATTACCGTATTGACGGCGACGCATTAATCGC 55665 29 100.0 32 ............................. GACTCGCCCACCCATTTGGCCACCGCAACCAG 55726 29 100.0 32 ............................. TTGGCAAGATGTCGCTGAGTGAATCCTCGGTC 55787 29 100.0 32 ............................. CCCGAGACCGAGGCGCGGCTAAAAACGCTCGT 55848 29 100.0 32 ............................. GCTTTCGACGGACTTCCAAGAACCGAGCGAAG 55909 29 100.0 32 ............................. TGGTGACGGTTGACGCCTACGGAATCGAGAGT 55970 29 100.0 32 ............................. CACGAGGACGAATACGTCTGCTACGTGTACGT 56031 29 96.6 32 ..A.......................... GCCGATATCTCTGATTGTTACTCGTCGCTGAA 56092 29 100.0 32 ............................. TCCGTCCTGTGTGTGGGCGTTGACACTGGCGG 56153 29 100.0 32 ............................. AATCTCCTTAAGCGCGGCCATGTACATCAGGT 56214 29 100.0 32 ............................. GGCGGGCCTTGAATTGTGGGAGAAAAAAATCA 56275 29 100.0 32 ............................. TCCAGGACATGAAAGCTGACGCGCAGAAAAAA 56336 29 100.0 32 ............................. CTGATAGCTACGGCGAGGGGGAAACGTGTTAC 56397 29 93.1 32 ..........T.T................ CACCGCATCGACACGCCGACTGCGCAAAAAGA 56458 29 93.1 32 ............T.....A.......... GACGAATTATGGAACGTAAGTTTCTCGACTGG 56519 29 96.6 32 ............T................ AGGATATCGCTGATGCAGCGGCATATGAAGAA 56580 29 96.6 32 .G........................... CGCCGTGGATAAGAGCAGAGAGCAGTTTTTAG 56641 29 100.0 32 ............................. GGTAACTATACCTACGGCGACTTAAGGCATGT 56702 29 100.0 33 ............................. CCACCCTTTCATCCATAACCACCCCATCAACGC 56764 29 100.0 33 ............................. CCACCCTTTCATCCATAACCACCCCATCAACGC 56826 29 100.0 32 ............................. CCGCTGACGAATACGCCGTTATTTATGTAACC C [56835] 56888 29 100.0 32 ............................. GGTCATTGCCGTTCGCGCAGGTGAGGCCGTCT 56949 29 100.0 32 ............................. TGTCCCCGTTATCCAGAGCGGACTGCAGTCCG 57010 29 96.6 32 ............T................ ACTACACCCGAATCTACCCGAAATGACGCCGA 57071 29 100.0 32 ............................. GGGAAATAACCCTTATTGTCTGTTCGCCCTCT 57132 29 89.7 32 ...........AT....C........... TACTCTACGTAGTGCGAGAACGGCTCGCCTGC 57193 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAACGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGTTGGCCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : ATGGTTGAGTAGAATCGCCAGGCCAGGTGGGTGCGCTTTGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCATGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCTCTCCCCGCCGCGATAACCTGCTTCGACTGTGCTTCTTTTAAGCATCCGCTCCTGTGTTTTCCCGTTCTTCCCACAGCTATTTATTTCCGCGTTGCCAGCCGCTTTATTTTATTCTGTCGTTTAAATTTAATTATACTGTCATTTATTTGTCATCTTATTGTCATAATAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //