Array 1 179595-180205 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTQ01000001.1 Bacteroides fragilis strain AF27-10 AF27-10.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 179595 29 100.0 34 ............................. GAACGAAAAGGCGGGCTGGATTTCAGCGGACTTC 179658 29 100.0 36 ............................. GGAAATGGCGGAAGGATTGGCCGTCAGGGTAACTGA 179723 29 100.0 37 ............................. TTAATCATCACATTGATCTTCTTAATCGCTTCATCAG 179789 29 100.0 34 ............................. CCGAGTACTTGTACATCGTACAGTTTCCCTTGCT 179852 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 179915 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 179980 29 100.0 35 ............................. AAAAGAGAGCACTTGATGCAAACGAAAAAGAGCAG 180044 29 100.0 37 ............................. GTCCTAAACGAAGGTCAACAAACCAACTTTCATCGTT 180110 29 100.0 37 ............................. TTGTGCAAAATGCAAGATATTACGATGTGCTGCACTG 180176 29 93.1 0 .........................G.C. | A [180200] ========== ====== ====== ====== ============================= ===================================== ================== 10 29 99.3 36 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTTGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGGTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : TAAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGAAATTTTTTCTTCCTTGCTAGCAACATCCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTGATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAGATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTCGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACATTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCGTGGATAGACGATACGATGGAAGGTATTGTTTTTGACTA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 730-3002 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTQ01000017.1 Bacteroides fragilis strain AF27-10 AF27-10.Scaf17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 730 47 95.7 30 ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 807 47 100.0 30 ............................................... TTTGGGATTCAGAACTTGCCCATTCATTCT 884 47 100.0 30 ............................................... TTATAGCGAAGCATAAAACTTGCCTATTTT 961 47 100.0 30 ............................................... GATAAAATGCCGCCTTATCTGGTCGCAACC 1038 47 100.0 29 ............................................... ACGATTAAACGCGGCTTCATTTTCCTTAG 1114 47 100.0 30 ............................................... ACGACCATCAATATACAATTTACATTTCAT 1191 47 100.0 30 ............................................... ACCGCAGCCAATTTACCATCAGGACCCCAC 1268 47 100.0 30 ............................................... TTTGGTTAATAATTGGATAACTGCGCCTGT 1345 47 100.0 30 ............................................... AGTGATCGAAGATGAAGCAAAAGAAGATAA 1422 47 100.0 30 ............................................... TTATCAATTGTAACAATCTTCATATCAATC 1499 47 100.0 30 ............................................... CTCTGGCCTCTGATTATCTGTGACCGTTTT 1576 47 100.0 30 ............................................... TCTTTGTATTGCAAGCTCTTTCCTTTTGCG 1653 47 100.0 29 ............................................... TAAGTTTTACGGTTTCCTTTGCAGTTTCA 1729 47 100.0 30 ............................................... TTCCGGGATGTACACCATTCGCTGCCATAT 1806 47 100.0 30 ............................................... GTTGACAATTCTATTTGCTTTTCCTGTGGA 1883 47 100.0 30 ............................................... CCTGCATCCTGTAAACGTTTACGCTGAGCA 1960 47 100.0 29 ............................................... CCATACAAAAAAGGGACTGACTGCAAAGC 2036 47 100.0 30 ............................................... GAAAATCGGCCGAACGGCTTAAGATGGTTA 2113 47 100.0 29 ............................................... CACAAATCTTTATTCCAATTGGCATAGCG 2189 47 100.0 30 ............................................... ACCTAACGAATCAAATTCAGGAACAGGGAA 2266 47 100.0 30 ............................................... TTTTCCTCTCGTTGGGTGTATCCAGAAGAA 2343 47 100.0 30 ............................................... CGGAAGACAGAATTTCCAATAGACAGGCAA 2420 47 100.0 30 ............................................... ATAATCACCAATCTTTGTGACTGTGCGTCT 2497 47 100.0 30 ............................................... AACCAAAATGCTTACCATTACGTTGCAAGT 2574 47 100.0 30 ............................................... CAGAAAATTGCGAATTGATAGCACCAGCCA 2651 47 100.0 29 ............................................... TAGAAAGAGCGATCTGTTTTTCCTGGGGA 2727 47 100.0 30 ............................................... GCCGATTTCAAGGACAAACGCAACTGTTTC 2804 47 100.0 29 ............................................... CTGAGGGATTTTAAAGCGAATGCACACGA 2880 47 100.0 29 ............................................... GCGCTAAAGTCTTTTGCCATGTTGATTGC 2956 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 30 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGTTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGGATGAAGAAAATAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CTTACCCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 97121-97266 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTQ01000012.1 Bacteroides fragilis strain AF27-10 AF27-10.Scaf12, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 97121 24 100.0 37 ........................ AACAAAAATACTAAGTATTTGTTTGATAAGCAAGGAA 97182 24 100.0 37 ........................ GCTTTTTGTGGCTTGAGTTATGTACCTTCATCATGAA 97243 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 3 24 100.0 38 ATTCCCAATATATTGTGAATTTGA # Left flank : CGTGTCGGTATGTGCTGTAGCTAATAAAATACCAAAATCATCTTTTTCATCAATCTGCAATAATCTTGCCTGAACGATGCGGTTGTGCCCTTCTGACAGCATGTTGGCAAAAAAAGGAAATAGATAATGGGAAGTATATTCCTGTTGTTGTTTTGTCAATGTCAGGCTTATGGAGGGCTTTGATGGATCATTGAAATATTCGTCATCATAGCGAAATTTATATTCGTTAGAAGATAATTCCGTAATAATGCCTACCCGTTCTTTATTCAAGTATACGACTCCTTGTCTCATAGATGTCCCTCCTTATTTTTAATTTTCAGAGAAAGTTCTAATCCTAATACCTCCAATATGGCATAGAGCTTTTGAAAATTAATATTTATTTCTCCATTTTCAATTTTTGTTATAGTATTGATACTGATTTGTGCTAAATCGGCAAGTGTTTGCTGATTTATACCCAACATTTTTCTTCGTTGGCGAATCTGTATTCCAATTTGTTTCAT # Right flank : ATTACGGCTATTTGTACTTTTGATTTTAGAATGACAGAGATTTCTTTTTGTTTGTAGAGTGTTTCTCAATTAACATTGTTAACGCCATTTCTCCGTTATTTTATTCTTGTGTGCAAATAACAAGCCTTTTGCATTGAAAACACTTGCTATTTGCATTTAAAGAACAAGCTTTAACGTAGCGTTAAAACAAAGCTTTGGGCGAGAGAAATCTTGTGCTTTAAAAACACTGTGTTTTAGTTCGTTAAGCACACTTTTTACTTCTTTGTTTCGCTGAATCCCTTTCTGGTCAAAAGCCTGTATATTTGCTTTTTTGTCAACTACAAATAGGGGACTGACACTCTCTGCTACCTTCTTTTCGTCTTGTTTAGCGCCGCTATCAGGTATCTTCCTTTGGCTCCGATGTCGCTCCAGCAAGTGTTGGCAATCAGTTTCCATACCGTCGTTCCCTTCCTCCCATAGTCCGACAGCCTGAGTATGGAGTTTACTTCCCCGGTGTCGGT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCCAATATATTGTGAATTTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //