Array 1 340148-340776 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOW010000002.1 Bartonella sp. W8098 NODE_2_length_585486_cov_189.404232, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 340148 36 83.3 30 ACA.TC........A..................... GAGCGGCAGCTTTCTTTTATGAAAACGAAT 340214 36 100.0 30 .................................... CAGAGACAAAAAACAACCGTGATGAGCTTT 340280 36 100.0 29 .................................... TTAATAAAATTTAAGCTTGTCTCATTTGT 340345 36 100.0 30 .................................... CGACACAAAAGAAGCGTTAAAAGCCCGTGT 340411 36 100.0 29 .................................... CCATAAGTTCCATTAAATTCGACATCTCT 340476 36 100.0 31 .................................... TTGTGTTGCCTGTTGCAACAAAGCGAAATTC 340543 36 100.0 30 .................................... TGTCGATGCAGGCCCTTTTGTGATTTTTGA 340609 36 100.0 30 .................................... CATGATTTTCACAATTGAATCAGCAAATCA 340675 36 100.0 30 .................................... CGGCCAACGTTTCGCCGAAAGTGACGGCAT 340741 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 98.3 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTCGGCATGAAGTTCGGCGCCAAGGAAGTTTATGCCCGTTTCGGCTTCCGCAAAGTATTGATGGCGGGTTCCCTCGTCTCGGCAATGTTTACCGCTTCCAATGGCTTGTTTTACCCCACCACACCCTATTTGTTGATGATTATCGTGCTTTTGTTCGGCGGCTTTTTGCGCTCTCTTTTCTTCTCCGGTGTCAATGCCCTTGCCTTTTCCGATATTGCCAAAGAAGACATTAGTCAGGCAACGCCGATTGCCGCCGTTGCCCAACAGGCTTCAATGGCACTCGGCATTGCAATTGCCGGCGCGGTTCTGGAAATTGCGAGCTCCTTTCACGACAATATATTGAAACTTGAAGATTTTCATACGGGCTTTTTCGTCGTCGGCTTTATCTCGGCACTTGCTTTCTTCATCTTCCGGACATTGCCACGTGATGCAGGCCATGCTTTGAACGAAAAAAGCATACAAAATACGGCACAACACTGATTAAACCAAAACATATTCT # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTAAAAAAAATGCCGTTTTTCATTAAAATAACACTGGTAAATTTCGATTTTTTTGACGTGTCTTTCACGTTTTCTCTAAAAATCTAACAATATTTTCTCATAAGTGCACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAATATCGTAATTTCATCGTTCGGGCAAAGGTGTTTTAATCCGTAAACGTAAGCATCATATCAAAGCGACATCGGAAATTTATTTCTCAATCACCGAACACGAAATTTTGGAAAACGAATTTTAAAAAGTCAAAATAGCTATGTTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAACGATGCCGGAATTTTTGAGAAAGCGGAAAAAGAAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 341396-341961 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOW010000002.1 Bartonella sp. W8098 NODE_2_length_585486_cov_189.404232, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 341396 36 86.1 30 ..C..AA.........G.......C........... GTCCGCTCATGATGGCAATGATCAACGGCT 341462 36 100.0 31 .................................... TTAAAATACATATTTCATAATCTTTGGTGAC 341529 36 100.0 30 .................................... CGAAGCTGAAAACGCAGAGAAAGCGGCGGT 341595 36 97.2 30 .........................A.......... AGTTCGCTGCATGACCGACGAACTTCTTTT 341661 36 100.0 30 .................................... ATATATGAAACAATATACGGCGTTTAACGT 341727 36 100.0 31 .................................... TTTATAGACGATATGTGCTTCCCCGCTTTTG 341794 36 100.0 30 .................................... TTACCAAGCAATGTATTTTAGTTAGATCAT 341860 36 100.0 30 .................................... GTTTTTACGCGGCTTGAGATTGGGCGAGAT 341926 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 98.1 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TTCTCTAAAAATCTAACAATATTTTCTCATAAGTGCACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAATATCGTAATTTCATCGTTCGGGCAAAGGTGTTTTAATCCGTAAACGTAAGCATCATATCAAAGCGACATCGGAAATTTATTTCTCAATCACCGAACACGAAATTTTGGAAAACGAATTTTAAAAAGTCAAAATAGCTATGTTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAACGATGCCGGAATTTTTGAGAAAGCGGAAAAAGAAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGAAAAATATAATGTAATTGAAAAATAAATTCAACAAACAGTATCAAGAAGTAAGTAAAGATAGATTATGACGAAGTTTTACCGGCGTTCC # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTGCCTTTCACGTTTTTCCTGGAAATCTAACAAGATTTTCACATAAGCACACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAATATCGAACTTTCATCGTTCAGGCAAAGTATTTTTAATCCGCAAACGTAAGCATCCTATCAAAGCGTCGTCGGAAATTTATTCATCAATCACTGAACACGCAATTCCGGATGCCGACTTTTTAAAAATCAAAATGGCTATATTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAACGATGCCGGAAATTTTGAGAAAGCGGAAAAAGCAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 3 342581-342881 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOW010000002.1 Bartonella sp. W8098 NODE_2_length_585486_cov_189.404232, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 342581 36 94.4 30 A..................................T CTGCCGCGTCATGGGGCTCAAACGTGCACC 342647 36 100.0 31 .................................... ATACTGACTGGACAACTCGATGCTACCAAGT 342714 36 100.0 30 .................................... GCGATTATGAACCAGCTCCTATGCCGGTCT 342780 36 100.0 30 .................................... AAAGAAATTCATTTAAGGAAATAAGATTTT 342846 36 86.1 0 ..............A.....C.......AA..T... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 96.1 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TTTTCCTGGAAATCTAACAAGATTTTCACATAAGCACACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAATATCGAACTTTCATCGTTCAGGCAAAGTATTTTTAATCCGCAAACGTAAGCATCCTATCAAAGCGTCGTCGGAAATTTATTCATCAATCACTGAACACGCAATTCCGGATGCCGACTTTTTAAAAATCAAAATGGCTATATTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAACGATGCCGGAAATTTTGAGAAAGCGGAAAAAGCAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCACTCCGGATGGCTCGGTGTCCAAGGAAAATATAATGGGATTGAAAAGTATAATCAACGAACAACCTAATTATGGAAGTAAAGATTGAGTATAACGAAATTTGCCAGCGTTCT # Right flank : CTTAAGCGTCATAGTAATATTGGCTTTAAATCGGGGTAGAAATGAAAAAGCTTATAACATCTTTTTTAACAATTTCTCTTCTAACGACATATTCCGTTGTCATTACCGGTTGCGGAAAGTCAGAAAAACAAAAGCAAGAAGATGCTGCAAAAGCATTTTTATCAGTTCAACCACGCCACGATCCAAGCACGAGCTTCTAAAAATGTTACTATTTCGTTTGCTTGATCCATTATTCTTAATCTTGAACATGTTCGCGGTTTTTATGTGGGGATTATATTTGCTTAATCCGTTTTTCGCATTTGTTCCATTTCATGTTTATACAGCGCCCGTTTCTCTTACTTTTTGGTTAGTTGTCTATGCTTTGGGAAAAAGATACTTACAGCGGCGGAAATTTTTAAAGTAAAACCAGTTGACATAATTAAGTTAATAACTGTGTGCGTTGCGGCTTGACCGCATTTTCTAATCTGTTACAACTCAGGCGGTTTTCACCTGTGACAGCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.82%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 4 344064-344231 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOW010000002.1 Bartonella sp. W8098 NODE_2_length_585486_cov_189.404232, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 344064 36 97.2 30 C................................... CTCACGAATAGACCGGAGTTCGTCGCCTTG 344130 36 97.2 30 ...................................C CTGTCATTAATGATGGACGCGGACGTATAT 344196 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 98.1 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAT # Left flank : ATTGATATTTTTTTAAAATTGAATAGTGTCTTCCAATAAAATTGAATTCAATTGGTTAAAGAGTAATCTGAAATGACTAAACGAGCAAAACTTATTTCCGGTATCTTTGCTATCGCAATCATTTTTTCTATCGTCCTGCTTTTTATCGCTTATTTATCCGGAGTCCGTGTTTTTGTTGTGCAGCCTATAGGCGCCGTTCCGGAGGGGAGAACATTAATTGTAAGTGGCGTAAGTAAATTACATGCTATCGACAGCCCCGATGCCGTTTGTGAACGTATTGGCACCGTCAATTTACTTTGCAGAGCAGGCGTTATAGCTGGAGTGGTCGATAAAGGCGAGATATTGTTGCGTCTGCCGTATAGTCAGTTTTTATATAATCTTTCGGGCGCTCCCGAAACCGAAAGGTAGATGATCATTATGAAAATCACGCTTAATTTGCGTCTTGTTATTTTTTCTGTTTCGATACCAACTGAACAGCTCTCGCTTGGCTCGTCCACTCA # Right flank : TCGATACCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTGTCATCCACGTTTTCTCTAAAAATCTAACAAGATTTTCTCATAAGTGCACGATCAATTTGTTGACCTGCAAGTTGCAAAAAGTATAGATATTTCATCGTTCGGGCAAGGTTGTTACGATCTTCCTAAAACAGGATAAGCCGGCATGTTCGGGCTTTTTTTTAGAAAGACCTCAAGCAATTTTGTGAACCGCTGTTTCCATTTTTTAGGAAAGCTTTCCGTTGTTAAAATGCTGGTGAATGCGTCGTGCTACTTAACAAGAAGTCCGCTTTGATAAAGCAGACTTTAAGATAGCGTGATAAACCGTAAGACAGCGAGTTAAACCGGTTTGGCACATCCGGTTTGCTTTTTTCAATTCGAGCGTGGCTAAAGCCGAACACGCCTGCCCCACTC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 5 347761-348127 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOW010000002.1 Bartonella sp. W8098 NODE_2_length_585486_cov_189.404232, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 347761 36 100.0 30 .................................... AGTGACGTGCAACAAGTTGATTATGTCACT 347827 36 100.0 30 .................................... CTTTAAAAGTTCCAACTTTAAGCATAGAAA 347893 36 100.0 30 .................................... GGCGGTCAAGATCGGCGCGCGGCCAATCGG 347959 36 100.0 31 .................................... AAAAACGGCGGAAGAAGCACAGGCAGTCTTT 348026 36 97.2 30 ..............C..................... TTGGCTATCCGGTTGACGACGAAGAGGCAA 348092 36 91.7 0 ...............................G.C.G | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 98.1 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TTTTCCTAAAAATCTGACTATATTTTCACTTAAGTGAACAATCAATTTGCTTATCTGTAAGGTAAAAAAATATCGAACTTTCATCGTTCAGGCAAAGTATTTTTAATCCGCAAACGTGAGCATCCTATCAAAGCGTCATCGGATATTTATTCGTCAATCACTGAACACGCAATTCCGGATGCCGACTTTTTAAAAATCAAAATGGCTATATTTCCACATTCAATTATTATGGCAGTAAACATTGGCTAAGCGACCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAACGATGCCAGAAATTTTGAGAAGGCGGAAAAAGAAAAAATTGACGACACCGTTGGGTCGGAAACCCCCGACACCAAAAAGGTGGCGCTCCGGATGGCTCTGCGTCCTAGGAAAATATACTGGAATTGGCAAATAAAATCAACAAACAGCATCATGAGGGAAGTAAAGATTGAGTATAACAAGATTTGGCTACCGTTCT # Right flank : GCACAATCCAAAATCATCCTGTCAGGCAACCACTAGCCGCGCATTGACAACACGTCAGATGGTATTTAGCGACGCGTGTTTTTCGTGCCTTTGGAAATCCGAGCCCCAAAAAATGAAAACGTTGGCCATACTTCGCCAAACAACAACACGCAGCGATTTTGGAAAGTAAAAAGGGCACGACTATTTGTAAAGGCATTCGCGTCAAGTCGGAGTTTGTCCAACCCGCAGGCTGTGAAGCGAACACATGAAGAGAGTAAGTTCAGTATCGCTCCCACAAATAGCGTCCAAGGTTAGCAATTTCCTGATTGTTTTGCATGTCACGTGCCGACAGAATGCGATCGTTGCGAAAGCTGCGCATGGCATTGCGGACAGTGCAAAAAGCATCAATATAGATTGTTGCTTTGCCGGCTATCCGATAGATATTCAGAGGCTCTATTACACGCTCGGTTATCACGCCGTCCCTGTCAACATATTCAATCATAAACTGAATATTATCGGTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 6 348891-349059 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOW010000002.1 Bartonella sp. W8098 NODE_2_length_585486_cov_189.404232, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 348891 36 100.0 30 .................................... GGGTGCCCAAACGTACCCGTTTATTGGTTT 348957 36 100.0 31 .................................... ATGAGAATGCATTGCTCATGCCGACAAAGTG 349024 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 3 36 100.0 31 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : ATCGCTCCCACAAATAGCGTCCAAGGTTAGCAATTTCCTGATTGTTTTGCATGTCACGTGCCGACAGAATGCGATCGTTGCGAAAGCTGCGCATGGCATTGCGGACAGTGCAAAAAGCATCAATATAGATTGTTGCTTTGCCGGCTATCCGATAGATATTCAGAGGCTCTATTACACGCTCGGTTATCACGCCGTCCCTGTCAACATATTCAATCATAAACTGAATATTATCGGTGATGCGATGGTTCGTTGCCTCGCCCGGTGTGACAAATTCTAGATTGTCAGGACGGATGGAAGTATCAAGTAGATTAGTCTGATAATTCTGCCGTGGTTCAGGATTGATGGGGTGCTCGGTGCGCCGTCTTATCACGTGCCCAAGCTTTCCTATTGCAGCGAAGCAGCACAGTATAAAGCCAACCAGAAGCCATATGCTCACTATTACATCCATTTTGTTCCTCCCCCTGCAATGCTACACCGTTTAAACATTTACACACAATAGC # Right flank : CCGATATCCACTTAACCCTTTGTTTTATAAGGATTAAGTGGATATTTTTTCAAAAAAAATGCCGTTTTTCATTAAAATAACACCAGTTGGGCGGGATTTTTTTGACGTTTCCTACGTGCCTGATCGGAAAATCTTACGATATTTTCATATTGCTTGTCGGTAAATTGGAAAATATAGATGTTCCCTCGTTCAGGCAAGGAGGATTCGATCTTCCTGACATAAGATTCGAATTGTTCTTTTCCGTTACAGAAACGCAGATAATTCGAGAACTGGCTCATCTCGAAGCCAATATCCAACAAAAATTGTCTGAATTTCGTTGCGTCGTGGTGCTGTTTTCTTGTCTCTACCGGTAAGTCGAAAGTAACTCATATCCACATTAATCGATACCCGCTTAAATGTTTAGGACCCGATGTTGCACGCTCAAGATAGGCTGTCATAATTGTCATTTTCTCCCCATGCGTCATCAATTTGGACCGGATCGTTTTGCAAAGAAAAAATTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //