Array 1 6969-5218 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHUN01000018.1 Streptococcus agalactiae strain GCH74 18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6968 36 100.0 30 .................................... AATTGAGCTACCTAGATTGCTGTACTTAGA 6902 36 100.0 29 .................................... CGTTCAATCTGTTCTTGCTTTTGGTCATC 6837 36 100.0 30 .................................... AAGGGTGTTAGATGATAATACCTTTTTTAA 6771 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 6705 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 6639 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 6573 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 6507 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 6441 36 100.0 30 .................................... TAATGTCTTTTCCTAGAATGTACATTTCTA 6375 36 100.0 30 .................................... ATTACTTTCAAGATGTCTATGACTATATGC 6309 36 100.0 30 .................................... TATTTCATCATAGAAAATCCTGCTAGTGGT 6243 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 6177 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 6111 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 6045 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 5979 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 5913 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 5847 36 100.0 30 .................................... AACTGTGTGATACTTTTCGTTTTTTTCTTT 5781 36 100.0 30 .................................... TTTTATAAGTGATAGAGTGTGCAACACCGT 5715 36 100.0 30 .................................... TTAAAAGATTTAAACTATCAAGCGTCAATT 5649 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 5583 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 5516 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 5450 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 5385 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 5319 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 5253 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //