Array 1 28268-29883 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYUP01000005.1 Salmonella enterica strain BCW_6525 NODE_5_length_209671_cov_2.70521, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28268 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 28330 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 28391 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 28452 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 28513 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 28574 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 28635 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 28696 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 28757 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 28818 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 28879 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 28940 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 29001 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 29062 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 29123 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 29184 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 29245 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 29306 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 29368 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 29429 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 29490 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 29551 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 29612 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 29673 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 29734 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 29795 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 29856 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 46166-48002 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYUP01000005.1 Salmonella enterica strain BCW_6525 NODE_5_length_209671_cov_2.70521, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 46166 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 46227 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 46288 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 46349 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 46411 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 46472 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 46533 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 46594 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 46655 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 46716 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 46777 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 46838 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 46899 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 46960 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 47021 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 47082 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 47143 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 47204 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 47265 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 47326 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 47384 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 47445 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 47506 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 47567 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 47628 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 47689 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 47750 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 47851 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 47912 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 47973 29 93.1 0 A...........T................ | A [47999] ========== ====== ====== ====== ============================= ======================================================================== ================== 30 29 98.5 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //