Array 1 248414-245444 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOK01000002.1 Parageobacillus thermoglucosidasius strain DSM 6285 DSM6285_2Chrom, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 248413 30 100.0 38 .............................. AGAATATTTTTGTTAAATTTAATGAAATGGGTTCAATA 248345 30 100.0 38 .............................. ATTTTTTTTTTTTAACGACGGTTGCCGCGCGTGGCACC 248277 30 100.0 37 .............................. CTAATTTCATCAGCGAAAATAACGCCGCGGAATAACT 248210 30 100.0 37 .............................. GCCAAAATTCGACTCTGCTCATGCGCCATTCGCCCCC 248143 30 100.0 37 .............................. TTAATCACCGCGTCACGAACGGGCTGCCAAGCGTCTA 248076 30 100.0 36 .............................. ATTTCATCAGCTGCACTTGTTGGTGATTTCGCTTCT 248010 30 100.0 37 .............................. TCTTTTTTGATAAAATGAAAGTGAGAAGAGATAATAA 247943 30 100.0 38 .............................. TGCAAATATTGTGACGCATTCATACAAGATAGCGGACG 247875 30 100.0 36 .............................. CAACACCATTGAGAAAACGATCACCGTGGAAAAAAT 247809 30 100.0 36 .............................. GTGAAATCGTTCGCTTGTTCAAATTGCTGTTTAAAG 247743 30 100.0 38 .............................. GAAAACTATATACCATTTCTTTTGCGTCTAAATGAGTG 247675 30 100.0 39 .............................. CAGTTGTATCGTATTTTTTACAGATTAATTCATAATCAA 247606 30 100.0 35 .............................. ACACTTGTGTATAAATTTTATTTGCAAGATGTCTC 247541 30 100.0 37 .............................. TGACATGCAAGCAATAGCCTTTCTTGGGTGTCTCATG 247474 30 100.0 36 .............................. CGAAATGCGCAAGCAAATTCAAATGCTCGGACGTGA 247408 30 100.0 34 .............................. GCTGCTATTTTAGCTATTTCCCTCTGAATTCCTC 247344 30 100.0 36 .............................. GACGATACGTCAACGATACGTACCACGTTAAGTGGG 247278 30 100.0 36 .............................. TATTTCTCAACCATCCGTTTGCCCGTTTCTACTTCC 247212 30 100.0 35 .............................. TCATAGTGCGGATGAAATCGAACTCGTTTGTCCAG 247147 30 100.0 36 .............................. TTCGTTCTTTCAGTAAATTCACTTCTTCATCACTCC 247081 30 100.0 38 .............................. ACATTTCTCCATATTCGTAAACAGCTATAAGATGCTCT 247013 30 100.0 37 .............................. AATGAATGAATAAATTAGCTTTCATATGTTACACTCC 246946 30 100.0 37 .............................. AGGCGGGCTTCTATCGCTTTGCGCTCGAAACATTCGC 246879 30 100.0 38 .............................. AACAAGACACACAAGAGCAACCAAAACAAACATACATT 246811 30 100.0 35 .............................. TAAAATTACGCATGACTTGGCGAAGAAAATCGCGC 246746 30 100.0 36 .............................. TACTATGCCGACAGCACCGGTCGAGCAAGACTATAT 246680 30 100.0 37 .............................. TGATGTAGATAGCTGTCCTAAGGGAAATCCCTTTTTC 246613 30 100.0 39 .............................. TTTGACGGACTAAAAATTCGTAACTGTCGGCGACTTCCG 246544 30 100.0 39 .............................. TTTTTTGCAACAACTTTTCAAATTCCTCATCTGCAAAAA 246475 30 100.0 37 .............................. GTCCTCACAAGAATCCAGGTCGCCCATGAGTACCTCC 246408 30 100.0 37 .............................. ATGCACAACGTCAAAACTTTATGAAAGGGGAAGTAAG 246341 30 100.0 36 .............................. GCGTTTCGGATTCTTCGCCTTCTAATTGGCTGGCGA 246275 30 100.0 37 .............................. GTTTCCGTTTTCAAAATCGACTCGTCAGCGCTTGTCT 246208 30 100.0 38 .............................. TCATCACAGCAAAACCAATTAATAATACATTTACCACA 246140 30 100.0 36 .............................. CTAAAGGTCATGGATGTCCAAAATGTTTTGGCGTCA 246074 30 100.0 36 .............................. GTTGAAACGACAGATGGCGAACCGAAGGAATTTGCT 246008 30 100.0 36 .............................. TATGCAAGCTGGATGACGAAAAAGAAGTGGACGATG 245942 30 100.0 36 .............................. TATGCAAGCTGGATGACGAAAAAGAAGTGGACGATG 245876 30 100.0 36 .............................. TCGGTGTTTACCGTCGCCTCCGACGAATTGGCGTTT 245810 30 100.0 36 .............................. AAAAGTGGGTGATTTTCCAAGCTCTCAACCGTGATC 245744 30 100.0 37 .............................. TAGACCGAAGAACCGAAGCAAGCAAGCCTGGAACGAA 245677 30 100.0 38 .............................. TTTTCGTCTTCGACTATAAATAGGGATGTGCAGTTCGC 245609 30 100.0 37 .............................. AACCATTTTGGACGCCAAATGATGCCATAACGAAAAT 245542 30 100.0 39 .............................. GCGTGCTGATAACATGCGCTGCAATCCCGCGCCATGCGT 245473 30 93.3 0 ....................A.G....... | ========== ====== ====== ====== ============================== ======================================= ================== 45 30 99.9 37 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : CGTAGCGATTTGGCAGTTTACGAATATATGGAATGAATTTTTATTTGCCGTCACGATCACGACATCTTCCCAGCAGCCGATTATGGTCGCGCTGCAAAACTTATCGGGCAGCCAAATTGTGCAATGGAACGTGCAAATGGCAGGAGCGCTGCTAGCGGCGCTGCCGACCTTGCTTGTATACATTTTTCTTGGCAAATACTTCGTTCGCGGTTTATTGGCCGGTTCGGTAAAAGGATAATCACGCATGCCAGCAAAAGCATAAGAAAAATGTTTGTTGGAAAAAATCCTTCCTCTTCTTTTAAGAGCTGACGGGGCTATGCAGGCGATCCGTTTGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATTTCTTTTTTCCCTTTATCCTTACGGCCATCATCAATCCGCTCTATTGACGGAATTTTCAAAATGGCTTATACTGAATTTAGCCTTCCTGGAACATATTGATTTATCAATATTTTTTGGGG # Right flank : AAACTTTGTCTATCCGCTTTTTTCTGCCACTTTTAATGGGTTTAAAAAAACAAACCGCTGATTTTCAGCGGTTTGTTTGTTGATAAAGGTGTTTTAGCTAAGATTTTGCTGCTTTTATTGAGGTTGATCCTAATATTTTTTCTTCCATAGGTAAATGCAAAACAAATGTTAACAGGGGATAAGAGAGTCTCCCATGATTCAACACGATCCGGAAAATTCCGCTAAGAGGCTGCGGTTTGCATTTTTTATTCTCCGGTAATCTTAACATCGCCGGCGTCTCTCTGCTCTTTGCTTTGGAAGGCTTGACGAAATCTTCAGCAAAATGACTGCAGGGCATTCCTCGCCTTTGTTTTTTTGCTGTTTGAAGGCTTGTGCGGTATAGTTTTCTTTACACAATAAATGATTTGCTGCGATTGCTGCGATAAGCACTGCCCGGATGATCTTCTGGCAATAAGCTGCTGCCGTAATTAAATAACTTTTCTCGTAACGTTCCCGGTTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 20106-22676 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOK01000006.1 Parageobacillus thermoglucosidasius strain DSM 6285 DSM6285_6Chrom, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 20106 30 96.7 35 ....T......................... TCCCGTATTTCCTCATAGTCACTCTTTCCATATTC 20171 30 96.7 36 ....T......................... GATTTTTTCTATGAAGTGACGGGCGAAGGATCTTGG 20237 30 96.7 37 ....T......................... CGAAAAGAACACGTCGCGGACGGCGGGAGGTGACGCG 20304 30 96.7 37 ....T......................... CTGTGCCGCTTTGGTTGAATTGACCGTGGATTTTCCC 20371 30 96.7 36 ....T......................... CCGATACCATAAAGCGAAGGTGACACCGTTTGTTGT 20437 30 96.7 36 ....T......................... CCTTGCATGTATAACGCATAGTGCACACACTCGTGG 20503 30 96.7 39 ....T......................... ATCGGAAATAAATTCTGCGGCGTGACTGTCGGCAAGAAG 20572 30 96.7 37 ....T......................... CAAGGTGGCGCAAAGGAAGTTCTCGTTTATACAATGC 20639 30 96.7 38 ....T......................... CGAAATCGAAAAATCGCCCGAAGACAAGGTGCGGGAGT 20707 30 96.7 35 ....T......................... ATTCCGGCGACTTCCGCTTTTTGTTCGATTTTCTG 20772 30 96.7 36 ....T......................... TAATAAGAGTAGAAAGGAGGTGAAAGAGTGATGAAC 20838 30 96.7 38 ....T......................... CAGGCCGAATGGATGAAAATGGGCTTTAATACCGACAA 20906 30 96.7 38 ....T......................... TAAGATACCGGACGAAGCCGTATACGAGTTTGCGGCAG 20974 30 96.7 36 ....T......................... TCCGAACGCAACCGAGACACGTTTGACGTAATCGAA 21040 30 96.7 38 ....T......................... CTGTTAGAGGGCTTGCTTTTGCCCCTTCTATTATCATT 21108 30 96.7 36 ....T......................... CCGATTAATTCACCTGAAAGAATTTTTGACATAGTT 21174 30 100.0 36 .............................. TGGTCCATCTTGGTATCATACCACTTCATATTCAGC 21240 30 100.0 36 .............................. AAGAACGTGAATTTCCTATTTTGAGGTGTAGCTCAT 21306 30 100.0 36 .............................. TTTTGGGGACTAAACCCATTTCGTCAAGCTACTGGT 21372 30 100.0 37 .............................. CTGACTTCTCCGCGTTTCTTTTTGCTCGGGATAACTC 21439 30 100.0 35 .............................. GACATGCAAGCAATAGCCTTTCTTGGGTGTCTCAT 21504 30 100.0 37 .............................. ATATCTTCTGAAACGTAAACCCCCTCTGGCGCAACAG 21571 30 100.0 37 .............................. TTGAACATGTCGTAAATAAGTCCTTCTGCCATCACCC 21638 30 100.0 35 .............................. GGCTTATGTCGCTATAATCAGACGAATAAATCTGA 21703 30 100.0 35 .............................. ACGCAAATCAACGATCTTCGAATCGCTAAAGCCTT 21768 30 100.0 39 .............................. GCCGAATCGACTGAATCATCAGCGCTTGCTATTTGTATC 21837 30 100.0 38 .............................. TCCTTGAACGAGTACGGCTGAACCCCCAAAAGAATAAC 21905 30 100.0 38 .............................. TGTAACGTGAAAAAAACTTCATTTCCTGCCACATCTCC 21973 30 100.0 39 .............................. AGCAACTTCTTGAACGATTGCTGCGTGATTCATCCAGAC 22042 30 100.0 36 .............................. ACCGAGATCGCGAAAAAATTTAATACGACCGTGGCC 22108 30 100.0 36 .............................. CATCACTAGCTATTCCAAGCACCAAAGGGCCAAATT 22174 30 100.0 38 .............................. GCATTTTCATCGTTTCATCAAAACTTTGTTTGCCAAGC 22242 30 100.0 36 .............................. TACTCAATCCCCAAAATCCCCATCTCTTGAAGTGAA 22308 30 100.0 38 .............................. ACCAAACTCGAACGTCAACGGATAAAACGAGAAATCGA 22376 30 100.0 37 .............................. GGTTTAGACGCTCACGCGGCTGGATTTGAAGAAGTTC 22443 30 96.7 37 .............................T ACCGTATTAAACACTGATGATGTCGTCGATTTGATAT 22510 30 96.7 39 .............................T GCGACTTCCACCATTGCTTTTTTGCCTTTTTCTCCACCA 22579 30 100.0 38 .............................. TAACCATTTCACAAGGAACAGCGAACGCCATCAATGTG 22647 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 39 30 98.5 37 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : ACGAAAATCAACATGGAGAAAAGCGGACGCATTTCTTTTCGCCATTTGACGCAGAATTTTCTAAGATGGTAGAAAAAAATTTTTATAATAAATTTCAAGCATATTTTCAACAAGCACCAACGGAGAAGGTGACAATAAGCCCAATCCGCGTAACGAAAAGGGATAAGGTGATTACCGTATTCAAAGGGTTCCGCATTAACGCGTGGAATGGTATGTATGAAATTCAAGCACCGCTCCCTTATGTGAAATTTATGTATGACGTCGGCATCGGATCGAAAAATTCCCAAGGTTTCGGCATGTTCGAATTCATTGAATAGCGGCCATATACTTTTGTCGTCGATCCCTAATAGCGCACAAACCCCAGGGGGATCGACGACATGTTTGTTTTCTCATTTCTCCCAACAGCCATCAGCACTTTTGAATATTGACGCAATTTTCAAACTGACGTATACTTTATATATCCATTATTCGCCAACCTTGATATATAAGCGTTTGTTGGG # Right flank : CGTGGTCTGCGACTTGATAGCTTTCGTGTCGTGTGCCTGTTTATATCTTATGGACCGATTTTGCCTGTTTTTATCTTAGCTACGAAGATTGTCCCCTTCTTGGCGCTTGCCGCTGTGAAGGGCTTTTTTGTTGTAATTCACCGCCACATTTGTTATAAAGGTGGAAAAGGGAAACAATAACAATAAAACAAACATGGAAAGAAGTTTTGAAAGCATGTTCCGTATTCTTAAAGCAGAAAAGACGGTTGATGTTTGAAAGCGGAAGTTTGCTGAATTGGAAGTAATATAACGGAAAGGGTAGAGTGTGGATGGGAGTATTGGACAGTAAAAAAATTATGGAAATAAGAAGCCGTATTGAAAAACGAGTAGTGACGCTGCCCGATGGCACTGCTGTTCCATGCATAGGTCAAGGAACATGGCACATGGGAGAAAAGCCCCAAGAGAAAGCTAAGGAAATAAAAGCCTTACAACTTGGAATAGAATTGGGCATGAAAGTTATT # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : GTTTTTATCTTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 339711-341740 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOK01000007.1 Parageobacillus thermoglucosidasius strain DSM 6285 DSM6285_7Chrom, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 339711 30 100.0 34 .............................. TCAATGCGTTGTAAACGGGCAGAATCCACATTTC 339775 30 96.7 37 .A............................ TGTATTCGTTCATGAGGGCGCGGGTGTTGCCGCGTGG 339842 30 100.0 38 .............................. AATTCTTCGGCAGAAGCAAATCCCTCATTTTGTATTCC 339910 30 100.0 36 .............................. TCAAGCCGGCCGATTCGCATTCTTTTGGCGGACGAG 339976 30 100.0 40 .............................. TACGGGTTGGGATGATCCAAAAACAAAAAAGAAGTATTTA 340046 30 100.0 38 .............................. CTGAAATACTCGGATGGGACAAAGCGCGGTTGAGTACG 340114 30 100.0 38 .............................. CTCTGATTCCTGCGGGAATGACTGGTGTTTCACCAACA 340182 30 100.0 35 .............................. GTTTGGACGACAAATAAAATAAATTCATATTCTCT 340247 30 100.0 37 .............................. AAAGAAGGAATAACTATTGACGGAGTTACAGGTACAT 340314 30 100.0 39 .............................. ATGGTGCAAATGCAGTAGGAATAAAAACAGGAGCATATC 340383 30 100.0 36 .............................. ATATCAAAAGGGGGCGTTAAAATGAGTGAACCTGCT 340449 30 100.0 37 .............................. AAAGAAAATGATCTTCATTGGGATGGAATACCACTAA 340516 30 100.0 36 .............................. TACTGTCGTTAAAATCATATTTCCCGGTTAAATTTT 340582 30 100.0 36 .............................. TTGACTTGTAAATCTTCTGGTGATTCATTAGCAAGC 340648 30 100.0 36 .............................. TGTTGCATAGCTTGCAGGGAATACCTTCCCTGCAAG 340714 30 100.0 37 .............................. GTGTCCGCCACTCTGCCAATGATGGTCGGCCATGCTT 340781 30 96.7 39 .A............................ AATCCGAATTCAAGCCGCTTGGCGTAAGGAACACCGCGC 340850 30 100.0 36 .............................. TGTGATTCAACCAAAACCAAGAAAGGTGTCCAACGC 340916 30 100.0 36 .............................. CTCGTTGAATAGTTGAATGATCTTCGCCACTTCGTT 340982 30 100.0 36 .............................. TCATATTCCGTAAGAAAGTACACATAGACTGCACCA 341048 30 100.0 38 .............................. AAACAATATGATTGCGAAAAATGCAGCGATAAGGGCTA 341116 30 100.0 37 .............................. ATAACTTTCTCGTGAACTCATAACTCATTTGAATTGC 341183 30 100.0 35 .............................. TGAATTGAATTTCAATAGTGCCCATCTTTATAGGC 341248 30 100.0 36 .............................. TCAATGAAAATTTGCGATAATAAAGCCTAGGTAGAT 341314 30 100.0 36 .............................. TATGTTTGCTTGTCATACCCTTTGACCGGTTTTATT 341380 30 100.0 37 .............................. CAAACAACATAAATATACCCAGCAGAAGTGTCTATCT 341447 30 100.0 36 .............................. TTCCGTTACTGTTGAGACTGATAATAAAGGTTTTTC 341513 30 100.0 34 .............................. CTTCGATTAACCCGTTCGATGTCGGTCCAGCCGT 341577 30 93.3 38 C.T........................... GAAGTAATCTTGAAAACAGCAGCACAGGCTGCCTGGGA 341645 29 83.3 36 .TT.................A....-...G TATTTCCGGCGTGGAGATGGGATGATATGGGATTCG 341710 30 83.3 0 .TT.................A....A..G. | A [341718] ========== ====== ====== ====== ============================== ======================================== ================== 31 30 98.5 37 GGGTTTATCTTACCTATAAGGAATTGAAAC # Left flank : ATGTCTTTATAAAAATATGATAAAAAATCGTTAAAAGGTTACATAATGATGTGATGTAAAAATCATGAGTATTGTAAACACTTCACATATGAAATGGTGACAGCAGGAACGGTAAAACAATAAAACAGATAGCAATAAATGAGCCAGAATAATGACTAACGATAACATGCCTAGAAACAGTTTATTGCCAGCACTCAGCCGCTTTTTATGAGGATATAGAGGGAACACAGGAGGTGTCTGCAGCCGGTCTTTTCTTTTCTAATGAATACTCAGTGGTTAAAAATTTTGAATCAACAATAGATGTTTGAATTCATTATAGCAACATATATTTTTGTCGTCGATCCTTAATAGAGCACAAACTCCAGGGGATCGACGACATGTTTATTTTCCTATTTTCTCCTACAGACATCAAGCATTTTTTTATATTGACGCAATTTTCAAAACGGCGTATACTATACATATCCATTATCCACCATCCTTGATATATTAGCATTTATTGG # Right flank : CACTGACAATCTATATCCAAAAGAGCTAACACTTAATGATCCCCCTTTAAGTGGACAGTGTAAAAAGCCCATTTTTAATCAATGGGTGTTCCACTATACTTGGAGGGGATTTTCGCATGAAAAGGATAAATATTTCACCGTTATACAGAGGAATTCCAACAAAGAGTGATTTACATGTATGCAAAGGGAGAAAATTGCTATTAAAAATTAGATGGTGAAATGGTAGATTATAAAAAAGCGCTAGAATGTATTTTAATGGGAAAGCAAAGAAAAATCGATGTCGGAAGAATTGACGAAGAATATTGCATCACTGTAGTGGGGATTGGTTTGGATGGCAAAGTGGCTGAAGTAAATAATGTTTCCAAATACAAAAAATGGTTTAATTTTATTAGATTGGGTGCTCTTTCCTATGTACTTAGTTTCTTGCAAGTTTTATTAAAATACCGCCCTGTCAACATTCAATTAAATATTGATGGGGAGAAGCTAGTTTTTTTAATGTC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTTTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 66171-66398 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOK01000001.1 Parageobacillus thermoglucosidasius strain DSM 6285 DSM6285_1Chrom, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 66171 30 100.0 36 .............................. ATATCCTGCATATTCTCCGCATACGTCAGAGTTAGA 66237 30 100.0 36 .............................. ACAAATACGATTATTGCGGTCTTGAATTTCGTGCCT 66303 30 100.0 36 .............................. ATTTCAACCTCAAGGCTTTCTCCGTTTGCCTGTTCA 66369 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 99.2 36 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : CTAACAGGATATCTCGAATCCGCACAGCAATTTGAAGTGTCACATTTTTTTCCTGCAACCCATTTCCAATTGCTCCGGGATCTGCTCCGCCATGTCCTGGATCAATAAAGATTTTTACCATTTCTCCTCACCTCCATAAATAATTTATGTTTGTTCGCTGGACGTGCCTGTATAAAAAGCCTTGTGCATTTGAATCACCACCGTAAAAAAGAAAAAGCCACCTACCTAACAGGCAACTTATTTCCGTTCGTGGCATGCCCTCTCGCGAATAAATATAGGAAAGGGGATTTTTGCACATTCTTTCCTAAAACATTGCATTCCTAAATATAATAAATGCCGTCGACCTCCGATCATGCAGAAAACCCAAGGGATCGACGACAGTTCTTATTCCCTTTTTCCTTAGGAATCTTCATCATTCCCATATATTGACACAATTTTCTTAATAGCGTATACTTTATGTAACATTTCAGAAAAATGCTGATACATCAATATTTTTTTGG # Right flank : CCGATTCACCCGATCAACAAGAGTTTTAGAACCAAAATCATTTGTATCTCCCTATAAGGAATTAACCCTCTCTGTCCGCTGCCTGACTGGCCTTTGAAGTTTTTGAACGAAATTTGCTAGTGATAAAAAAAATCGATAAAGCCGACAAGTTGTTTTATATTATGAAGGCAAAATGATAAACAAGGTTTCGCTCATGTTAGTTCACTTGTCTTATGGCTCTTGCCGGAATCAGCTGGCTGGGCAATTAGGAACCGGTGTTGCTGCGGCCTGGTTAGGAGCTAGTGTTGGCTGGTTACTTACGATAGTAAGGAGGATATAGATGTATAAAAGTGGCTTTAAAACATTCTGGGCAGAAAAGTCACCATTTTTGCTCGAGGAACTTTTCAGCAACTCACTTTTCTAATTATCTTTTCCCCTCTTTTCACAAGCATGTTTAAGGAAAAAGTTTTGCTTTTGCCATCTCTGTTTTATTTATTACAATCATTAATTTAGGTGTGGAG # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 73899-77466 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOK01000001.1 Parageobacillus thermoglucosidasius strain DSM 6285 DSM6285_1Chrom, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 73899 30 96.7 35 .G............................ ACCATTTCACCAGTCATTTCCTCTTTGTCACGAGT 73964 30 96.7 37 .G............................ CGTGCTGGTGACATTGTTCTTGTCGGGTTTGCGGAAC 74031 30 96.7 38 .G............................ ATTGGGATAAGACCGACGAGGTTGTCGCGACATTGGAC 74099 30 96.7 38 .G............................ TGCATTTCCCATGTCGCGACGTACTCGAACGGCAACCC 74167 30 96.7 38 .G............................ CGGCGTTTTTCAATTTCTTCTTTAGGCATGAATTCGAA 74235 30 96.7 37 .G............................ TGACAAAGGCGGAAAATTTATCGCAGCGGGGGCAGCG 74302 30 96.7 37 .G............................ TATAGTTTGTGTTATGGCGTGGCCGCTAGTGGTATTT 74369 30 96.7 36 .G............................ CAGGGTGAAGGGGGGTCTGGTAACGCTCAACCTTCT 74435 30 96.7 41 .G............................ CCTTCGCGTACCGCCCAATTTTCTTTTGCATAGTAGCACTA 74506 30 96.7 36 .G............................ TACGATTACTGCTATTTTTATTGATATGGAAATGAC 74572 30 96.7 37 .G............................ TGTGAAGAGCGTTTGATTCAAATTCGAAACCGTGCCT 74639 30 96.7 37 .G............................ TTTCCACCGATGAGAACCGCAATCCACCAGGAATCAA 74706 30 96.7 35 .G............................ ACTATCGCAACTATGGCTATATAGCTGGGCAGGGT 74771 30 96.7 37 .G............................ TTTTCAATCTGAAACGATCAGATATTAGAAATGGAGA 74838 30 96.7 36 .G............................ TCCAGCATTTCACCGCTATACGCCACCGCTTCGATG 74904 30 96.7 36 .G............................ TATCAATATACGTGATGGTAAAGGTGGGAAGGCTAG 74970 30 96.7 36 .G............................ AAGCGTTTGACCGGCGACGCGAGCCGTACTATAAAC 75036 30 96.7 35 .G............................ CTTATTTCAGCTGTCGTTATATTGGCCCTATTCAT 75101 30 96.7 36 .G............................ GAAGAATATAAAGGTTCTGACCGTATCCTCAAGTGT 75167 30 96.7 37 .G............................ AGGAAGTACAGCTTTTTGAGTTTAGCCCGGTAACATT 75234 30 96.7 36 .G............................ TCAGTCCCTTTTTCATCCCATACCTCCTCCCTATGA 75300 30 100.0 37 .............................. TTTCCCTCTTAATCTCTCGATCTTGGGCGATCATGTT 75367 30 100.0 36 .............................. CCTGCATTCCCAGGCGTTCGAGTATTGCGTCCAGAA 75433 30 100.0 38 .............................. AATATTCCCAACTCAAAAATATACATCAAAATTCAAAA 75501 30 100.0 39 .............................. ATAGTTGAGCCGCGTTGCTGGTCCGAAGCAATCACAAGC 75570 30 100.0 35 .............................. TGAGCAGCTAGTTTCCGAGCACGGAGAGAAATTCA 75635 30 100.0 36 .............................. TATGATGAGCGCTTGAAACATTGGAAACGCGAAACA 75701 30 100.0 35 .............................. TTTTAACACGCTCTAGCTCGTTTTGCAACCATTCG 75766 30 100.0 35 .............................. ATTGCTTCAACGATTGTGTTTTTGTTCGTTGTAAG 75831 30 100.0 35 .............................. TTTATGCAAGGAAAACCGTTTGACGACGGAACTAA 75896 30 100.0 39 .............................. ACCGCCGAGCAAAAAGTACAGGACAAGCTCAAAGAGCTA 75965 30 100.0 37 .............................. TGCAAAAAAGGCGTCTATATCCGCCTGTGTCGCCATT 76032 30 100.0 36 .............................. TAACATGCGTAACAGTATAGCCGGCCTGCTGCGCTA 76098 30 100.0 37 .............................. AAATTAGAAAAGGAATGGCTTTCTACACCGGACCACC 76165 30 100.0 35 .............................. AGTATCAAGCCGTACTTTTTAAATAGCTCAGCTGC 76230 30 100.0 37 .............................. AAAGACGTACTAGGTGATATTGAAGACGGTCGGGAAG 76297 30 100.0 37 .............................. TTTTGGGGAAGCGGAGAACGTCAACGTATAAAAAGGC 76364 30 100.0 35 .............................. GCGCACAGGGGGTCGGAAGTGAAGTTTTTTTCGAA 76429 30 100.0 37 .............................. GGGATTGATCAATTGTATAAGATTGCGGTTTGTGATT 76496 30 100.0 36 .............................. ATATGTATGACATTCCCATACCGATCAATCTTGTAA 76562 30 100.0 36 .............................. CGCAATGAATACTGATATAAAGGCGGTTGTCCAGGA 76628 30 100.0 38 .............................. CGCACATATGGCAATAGGCTTTTACGTTCAATGGTTTC 76696 30 100.0 37 .............................. TGATGCCTATGCAAAAACTGCCCCACTCGCCATTTGC 76763 30 100.0 38 .............................. CGTTGGCGATTGTGAAACATCATCTATTGCGATGTTGC 76831 30 100.0 38 .............................. TCATTGACCCGATCACAAACATTTATCAAACGTTGAAA 76899 30 100.0 35 .............................. GCTTGTTTTCCGCTTCCTGCTTGTTTGCCTTTGCT 76964 30 100.0 35 .............................. CTTACCTTCTGCAATAGCTTTCAATTCGCTTGTAA 77029 30 100.0 38 .............................. TGGTTTGAGCTGGTTTGGGCTCTAAGCGAGGGACGTTT 77097 30 100.0 36 .............................. CTTTTCTTTTTCTTCTTTTGGATATCCATATTTCTC 77163 30 100.0 36 .............................. CCACCTAATGGATTCGCCTTGTAGATTCCGCTATAA 77229 30 100.0 37 .............................. CGAGTGAGTTTGACATTAGATTCTGCTGATTTTTCAA 77296 30 100.0 41 .............................. AACTAGTTGGATTGGCCGTAATTACGTGAATAATTTCGTCA 77367 29 90.0 40 .....C...............-...A.... CTAAGAGATCGTTCTCTTCTCTTATCTCTTAGGTTTTTTC 77436 30 76.7 0 ......GC...G.T...G.AA......... | C [77447] ========== ====== ====== ====== ============================== ========================================= ================== 54 30 98.1 37 GTTTGTATCTTACCTATAAGGAATTGAAAC # Left flank : AGTAAAAACGGCCTGCCGAGCTTGACAGTGGTTCCGTGGGAATCAAGCTGCCCGTCAATTGCTTCGAATGGAACGCGCAAAAATTGATATCCCGCTTCATCGGCAATTTTATAATCAAATGAACCATGATCATAATCCCAATTTCCGCCAATGGCATAACCAAGCGGCTTTAACAATTGCTCCAATTGAAATAGAGGAAACGTTTTCCCTTCCAACTGTGATGGAATTTCGATCATCGCAAACAACCTCCTTTTTCACCTATGTTTCCCTATTCGCGCTCTTTATATGATTGTTATGGAATATTGCCTGCTACAAAATGCCCCCACACTGTCAATGTCGTCGACCTGGAATAGCGCAGAAAACCCAAGGGATCGACGACATTTCCTTTTGCTGCTTTTCCCAAGTTCCATCAGCACCGCCGCATATTGACGAAATTTTCAAAACCAACTATACTAAACATAGCTGCTTTCGAAAAAGCTGATATACCAACGCTTTTTGGG # Right flank : CACTTACTCCGGCTGCCTTCCGATACGCAATTCAGTTTGTATCTTATTATGAGGAGCAAAACAGGTGTGCAGCTGCATTGTTGCTACCTTTGCTGCCACGGTTTATATTGCAAAACTTAAAACCTCGGTGAATCTTGTTTTTTATTGAGCAAGCCATTCTTATTGCATATTACCGTGGGTGTCAGCGAAAATTTGCTACGATAAGCGCGAAACACAGATGCCTGAGACAAAAACACAGCAAAATTACTTTTTTTACAAATAAGATAAAAATCCCTTCCCGCAGCGGAAGGGATTTTTTGATAAGCAACCGGTGGCAAGTAATGTCTTCGCATGCAAAAAACGGAGTGCATGATGCACTCCGAAAATCCGTTCTGTTATTTCAAGCGTTTTTCAAGTTCCGCTTTTTTCTCTTCGTATCCTGGTTTGCCAAGGAGGGCAAACATATTGACTTTATACGCTTCTACGCCTGGTTGGTCAAATGGATTTACCCCTAATAAGTA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : GGTTGTATCTTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 400786-395979 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOK01000008.1 Parageobacillus thermoglucosidasius strain DSM 6285 DSM6285_8Chrom, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 400785 29 100.0 38 ............................. TTGTTTCAGCATACTTCTGCTGCTCATATGCAGTGCGA 400718 29 100.0 37 ............................. TTCTGGAGTATCAAACAATAGTTCATCCGGAATAGCC 400652 29 100.0 36 ............................. TAAATCTGATTGCATCGAGAAGTGTTTCAAGTTTTG 400587 29 100.0 37 ............................. AAAGTTCAGAATATGAAAAACGCTGGGAAACATTCGT 400521 29 100.0 37 ............................. ACATTCACGAAAATCATCTAAAGTACAAGGCGCAAAT 400455 29 100.0 36 ............................. TGTATGTCGGCCAAGCTTCTGGAAAGATTGTTGGAG 400390 29 100.0 40 ............................. CCGCTAGAAAAAGAGCAAGAACAAGGGAAAGGAGCAAATA 400321 29 100.0 36 ............................. GCATAGCTTATAAACGGTCTGCCGCTTCTTGTATAA 400256 29 100.0 37 ............................. GTCGCGCGCCGCCCTTTCCGTGCTTGTCGGCTGTCGC 400190 29 100.0 38 ............................. TTTGTAATGAATCGATTGCTCTTTTCTGCGTGATATAA 400123 29 100.0 38 ............................. AACTACGAACAGGGATAGTCTAGGCATACGTACCATAT 400056 29 100.0 34 ............................. TCGGCAGTATTGCCTCCTTTTTGTTCGTGATATT 399993 29 100.0 34 ............................. GCGATTGAAGCACGAAAAAGCGCAACTGGAACAA 399930 29 100.0 37 ............................. ACGAGAGGGGGAATTACTCCCCCGATAGTGTTCCAAC 399864 29 100.0 35 ............................. TTCTACCCTTATTATAGACGTTATACGACACTTTG 399800 29 100.0 35 ............................. TCCTATAAGCACATAAACATCAGAGAGTTTATTCC 399736 29 100.0 36 ............................. ATGCCGGAATAGAGTCTGCTGGCGGCTCCGGTGGCC 399671 29 100.0 35 ............................. TGGCGCTCTTCGCTGCCCAAACAAAAGGGGCGGCT 399607 29 100.0 35 ............................. TACCATTTTTAAAGCCAACGCCATCCGAGCAACCC 399543 29 100.0 36 ............................. TAACAGTATATTAAATAGCACAAAAAGGAATGATAT 399478 29 100.0 38 ............................. CCATTTCCACCATCGCCGCCATCTCCACCTTCTGCAAA 399411 29 100.0 37 ............................. ACAGATGTAAGAAACAAGTATTTGCTATTACATAGCA 399345 29 100.0 37 ............................. GCGGGACAGCAAGATGGAGGGCAAGGTCAACAAGGCG 399279 29 100.0 39 ............................. AGTTCAATGTTTTTTAATTCTGGAAATTCTACATCGCCT 399211 29 100.0 35 ............................. TGAATCGTGATGATGTCCGTTGCGACTGTATCGAC 399147 29 100.0 35 ............................. TTGTTCTCTCACCCTTTCATAATATCAATAAACGC 399083 29 100.0 37 ............................. AAATACACTAAAAGCAAATCACGACTACGGCGTGATC 399017 29 100.0 38 ............................. TGTAAAAAAGCCGCAAGCCAAGTCGAATAATTTTCTGC 398950 29 100.0 35 ............................. GCGATTGAAGCACGAAAAAGCGCAACTGGAACAAA 398886 29 100.0 38 ............................. GTTATCACTTCAAACCCTAACCGTTCTACCTCGCTTTT 398819 29 100.0 37 ............................. ATTCGTTCACCCCCTAAAGTTCAATGCTGTCTTGCGT 398753 29 100.0 37 ............................. CTTCACTTTTTGTCCTTGTTTCATCAATTTCAATGCT 398687 29 100.0 38 ............................. TCCTTTCTCGCCCCCTTCATATGCTTTCTGCCTTGAAT 398620 29 100.0 37 ............................. AATATCCGTGAGTACCGCCAATGCCGCAACGGTGATC 398554 29 100.0 36 ............................. ATGGTACGAGCATATGGATACGGGGCGGCTGATAAG 398489 29 100.0 35 ............................. TCATTTGTCCGCGTCATGTCGCCACCCCTTTTCAA 398425 29 100.0 35 ............................. GCCGAAGTGAGAACCGAACGCAAATGGAAAGCGGC 398361 29 100.0 35 ............................. AAACTCTATCGTTTGACCCCGATAGAGCCATATGC 398297 29 100.0 37 ............................. CCGCAATCGCGGATTCCTTCATTTTCCCAGTCTTTAG 398231 29 100.0 34 ............................. AAGTAACAGCGGCGGCAATCAATTCTTTCTTCAT 398168 29 100.0 35 ............................. ATCAACCGCATGGGGAACGCCGTATTTATATCTAA 398104 29 100.0 35 ............................. ATAGGACATATTTTCAGGATTTTCCCCGGCTAATT 398040 29 100.0 39 ............................. AGTCGACCGCAAGGCGAAAGTGGGCGAGAAGATTATTGT 397972 29 100.0 41 ............................. AGTTCTTCGAGGTAAGGAACCGTCGATAAGGTAACAACATC 397902 29 100.0 36 ............................. GGGCTAGTTCTCACCATCATTCCCTCTTTCATCTGC 397837 29 100.0 36 ............................. ACGACCTTGCGGTCCTTAGCGATCCCGCGACGAAAA 397772 29 100.0 37 ............................. ACGACCTTGCGGTCCTTAGCGATCCCGCGACGAAAAA 397706 29 100.0 34 ............................. AGTTTTCGCGACATCGTGAAGAACTTTGCCCAAA 397643 29 100.0 37 ............................. ATTGCGCCTCTAGCTGCACCCGGAATTGAGACTGCGC 397577 29 100.0 37 ............................. AGCGAAGCTGCGGAACGCTGGGGAATGAAACGAAATA 397511 29 100.0 35 ............................. AAGACGAATGGGACAAAGAAAACGGCGTCAGACGC 397447 29 100.0 36 ............................. TCGATACCTTTTTTGCTCATAGCTTCTTACCTCCTT 397382 29 100.0 36 ............................. CAATATATTTCAAACGGTCAATCTTGAAATGGTATT 397317 29 100.0 35 ............................. TGTGTCTTCACCTCCTTTCGATATCACCCTTCACC 397253 29 100.0 39 ............................. GTGCATGCAAACCCGGTCTTGCGCATTGTCGTCGGGTCG 397185 29 100.0 36 ............................. TGCGCTAGCAGGGGGGCAGAAAATACATTGGTACCT 397120 29 100.0 35 ............................. AGTTTATTAACTTCGGTTCTTCGTTCTGTGCGTAA 397056 29 100.0 35 ............................. TGATTGGGAGTCTACGTGGGGATTTGTAGTAGCAT 396992 29 100.0 36 ............................. ATGCTTGACCTCATATTCAACGCACGCGCGAATCAC 396927 29 100.0 35 ............................. ATGTTAGAACGCGCTTTAAATGATCGGGAAGTTTA 396863 29 100.0 40 ............................. CTCGTTCATACGCCGAATTATGCTTATACCCTATCGTCAC 396794 29 100.0 35 ............................. GATATTGCAACTTAGACATAGGGGAACGACAGTTC 396730 29 100.0 37 ............................. AGCCTTCCTTACGTTTCCCTCTACGACCAGCAGGCTT 396664 29 100.0 39 ............................. TTGAGCCTATATCATTAAATTTAACAAAAATATTTTTGA 396596 29 100.0 36 ............................. GTTCTTTTTCAATGGTTTTCAGCGCTTCCTCAATGC 396531 29 100.0 36 ............................. TCAATATCATTTACAGTTTCAATACGTGCAGCTGGT 396466 29 100.0 35 ............................. GCTGATACAACCATTGACCAATGATGAACGCACAC 396402 29 100.0 35 ............................. GTGCTAGGCTGGCAAGCCGGAAGGCGCAAAGACAT 396338 29 100.0 36 ............................. TAAAAAGACATCAATTAGAATTTGATGGATATGATG 396273 29 100.0 37 ............................. GTATTACTAATTAGGCAAAAAGAAGACAGTACAATAT 396207 29 100.0 37 ............................. CCGCGACAAGCATGTTCAAATTCGTTGAGTAGATCGT 396141 29 100.0 37 ............................. GCGATCGATACGCTCACGTTCAGATTTGGCCAATTGC 396075 29 96.6 39 .............A............... CGACTACTAAAATAGCATTTTTCACCTCTTAATCTTTCA 396007 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ========================================= ================== 74 29 99.9 36 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : TACAAACCGTTGAAAGCGTGGTGGTAGAATGTATGTCATTATCACATACGATGTGGGAGAAAAACGAGTAAATAAAGTATGTAAGAAACTTAAGGAATATTTAACATGGACGCAGAACAGCGTCTTTGAAGGAGAAATATCAAAAAGTTTATTAATGAAATGCATGCATGAACTTGAATTCATTATAAATAAACAAGAAGATTCGATTTATCTTTATCAAGTGTCCAACCCAAAAAATATAAAAAAGCAAATTTTGGGGCAGGAACGGAATTTTGATGATCTATTTATTTAACAGTGTAAAGCAGTTAACATGTTGCAGTAAACCTCGGTTTTATCTCAATATTGAAAAATGCTTGATATATCAAATAAAAACCACTTAATTTTTTAACTAAAGTAAAAACACAATTGCCGCTTTACTGCAAAAACCTATATATTGATGTAATCAAGGTTTGAAGAAAAACATTGATACATCAATATTTTGCCGTTGTTTGAAAATAGGG # Right flank : TTATCTTTCAGAACAACAAAAAAGAGCATTCCTGTTAGAAGTTTTGGGGATTTGAATAAAAAAAGCACTATTGGTATGATTCGGTGATGTTATTGGAAAGTTGGGGCCTAATTGGGTACCAAGGTATGCATGAATTCTATCTCAAACAAGAAGATGAATCAAGTCACCGATCAAGCGGTAGTTGTTGTGCCATGGATATCAACGCAAAAAAATCATTTTGCATTTGTCAAGCGAGGATACTCATTTTCCGGCGTATCCGAAGAAAACAGATGAAACGTCAGCGTTCCAGTTTATCAACGTATAGCAAATGGAGAATCGAATGGCGCAAAGCTCGCCCTAACCGTACTTTAATCGTTATTTCGCACCGAATTGCATCACTTGATTGGTTAGAGCGCTACCTAGTGATAGAACATGGAAAAATTGTCGAGACAACTAGCTATGAGGAGATGATAAATAAAATCGAGAAGGCTGAACGGGCAGGGGAGAAAGGAGAGGAGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //