Array 1 51768-52273 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPDG01000012.1 Paenibacillus polymyxa strain TH2H2 Contig_012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 51768 32 100.0 38 ................................ CACAATGAAGGAGCCACCATACCGATTGGTACACTCAA 51838 32 96.9 36 ..................T............. TATTTGGACACTTTGACTGTCTTCGTCTTCGCGTCC 51906 32 100.0 37 ................................ TCAATCCAAATGTAGTGACTATCTATCATTGCCATTA 51975 32 100.0 36 ................................ CAGTGGAATACTTGCTTCTGGAGCTGTCATAATAAT 52043 32 96.9 35 ......C......................... ACCTCAACATAAAAATAATGAATTAATTCATCTGT 52110 32 93.8 36 ......C...............A......... AAACAAATGCAGGATTTAGGCTTGGAAGGTATGGTG 52178 32 93.8 34 ....T.C......................... ATCTGCTGGTTTGTCATATCCTTTACCGACATAT 52244 30 81.2 0 ....T.......A.--...T.....G...... | ========== ====== ====== ====== ================================ ====================================== ================== 8 32 95.3 36 GTCGCATTCCATGTGAGTGCGTGGATTGAAAT # Left flank : AACAGTTTGTAAAGCGCTGAAACAGGATGTGCTTACAGCGCATCATCAGGATTATAACGGTATTATTGTAGAGCCATATCGTAATGATATTGAGTACAAGGCTCCACGTGATGATGATTCTCCCGTCCCTATTCCATTTCTTTCAGCGTCAGCTCACTTTGAAATTACATTAACATGTGAGGGAGAGCATGAATCGGCTATGAAGTGGCTAAGTTTGGCAAAAACAGTCCTGCTCGGAGCGTTAAGAGATGAAGGCATTGGCGCGAAGACCAACGCAGGGTATGGAAGGCTTTTAGAGATTGAATGATAGAATCGTGAAGGTGCGAATGTGAAGCTCACATAAAACCCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGTAATTAAATCAATTACCTTCATTAAGAGTCAATGTTTGATTAAAGCTTTTTTGGCATCGTTTTTTGCGCTAATGAATGGAATTGATATCATTAGGGTATGAATTACTGCATTTTCGCT # Right flank : TACGCAGTCCCCCTATAGTAACAAAACATCCCTCTACGTCGCATTTGCCCCCGAGAATCACCTTTTGTGTGATCTACAGGGGGCTGTTTACAGGACTTATGAAAAATACTGTTATAACTCAGTAGACAGTATGTTAATTATTTCATTACAAGTAGCTTGAATATCATTATTTTTGAATATTAATGGAGATCCTAGTAATCAGCAAAAAAATAAAGGTGTGTTAACAATAGAATATAAAAGTCGATTTCAAATATCCTAATAGTAGAAACAATACTTTAAAAAACATTAATATAAAAATAGGTAGGGGTGAGAAAAGTCGCCTTAGTTGGTGAAAAGGAAGTAGTAATACGACATTTATAAATATTCTATTAATTCTATACAAACCAACTGGAGGAAAAGTTTATATTGGAAAACAAACATTGACTGAAGTTATTGAAGACTTCAAAAATATAACTGTTTGTACTTCTAGTATTTAATCAAATATCAGTTTTTTGTCAAAA # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 17354-17853 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPDG01000055.1 Paenibacillus polymyxa strain TH2H2 Contig_055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 17354 32 100.0 35 ................................ TGCATAATGGGAATCTGTAGCATACCCAGCTTTAC 17421 32 100.0 35 ................................ TCCATCCTATTAGCAATCTGATGTGTCTTTTCCCC 17488 32 100.0 34 ................................ ACGTTTTATGTCAAAACCATTTATCCCTATAACC 17554 32 100.0 34 ................................ ACGTTTTATGTCAAAACCATTTATCCCTATAACC 17620 32 100.0 36 ................................ GTCGAAGTAAATGACTGGAATTAACCGCCCGTTATC 17688 32 100.0 33 ................................ TTCGCAAAGTTATCGTCAGCATATTTCTTTGCG 17753 32 100.0 35 ................................ GTACACCGCAGCCGACGCTCGAAAATGGCTTTGCC 17820 32 78.1 0 ....T..C.........G.......A...TGG | CC [17845] ========== ====== ====== ====== ================================ ==================================== ================== 8 32 97.3 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : TTTTAGTGATTAAGTCGCACTCTATATGAGTGTGTGGATTGAAATTCTTGAACCCGTAGGTGTAACGCCAGACGATCAGGAGGTCGCACTCTGTATGATGCGTGGACCATGATGGAGTAGCCGTCACCTGGTCGTACGATTGGAGAGCGCCGTTTTATCCGAAATAAAAGATCCGATAAGTGGAAGAACGGATATTTTATGCGATTTGGAGGGTGGCCTACGGGTTAGTACACTTCCGTGTGGGATGAGGTGATCTTGTAGCAAAAAGATGATTTTCACTTCCATGGATGCCATAAATACCCGCAGTTAAACCTATTGTGGTGCGAATGTGAAGCTCACATAAAAACCCCGTGTCCTTCGCACCTCGAAATTTGTCGAAAAGAAGCTGAATCAGTTACCTTCATTTAAAATCAAGCGTTGATCCAACCCTTTTTGGCATCAGTTTTTGCGATAATGTGTGGAATTGATATCATTAGGGTATGAATTACTACATTTTCGCT # Right flank : GAGAAGCCGTCACCTGGTAGTACGATTGGAGAGCGCTTCTTTATTCGAATAAAAGATCCGATAAGTGGAGGAACGGATATTTTATGCGATTTGGAGGGTGGGCGACGATTTAGTACACTTCCGTGTGGGATTAGTTGATCTTGTAGCAAAAAGATGATTTTTACTTCCATGGATGCCCTAAACATCCGCCGTTAGATAATGTGAATGTTCTATTATGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCACACCTCGAAATGTGTCGAAAAACAACTGAATCAGTTACCTTCAGTAAAAATCAAGCGTTGATCCAGGCCTTTTTGGCATCAGTTTTTATAATAATGTGTGGAATTGATATCATTAGGGTATGAATTACTGCATTTTCGCTGTCGCACTCCATGTGGGTGCGTGGATTGAAATCTGCCACTTGCTCACTAGTGTCCCCTTTAGCCATTCCGGTCGCACTCCATGTGGGTTCTGGATTGAAATGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 20743-21030 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPDG01000056.1 Paenibacillus polymyxa strain TH2H2 Contig_056, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 20743 32 100.0 36 ................................ AATATGTTCAGGTTTTCGAGGAACTCCTTTTTTACT 20811 32 100.0 34 ................................ GTACGACCGTATCCATCATCAATCACCACGTCGA 20877 32 93.8 30 ...............G......A......... CGTCTCCCGCTGAAAATTTTGTATATGTTA 20939 31 84.4 29 .........T.....-.............GCG GTTCCTACGGCGGCGACAGCAGCGGTGGA 20999 32 78.1 0 ....T.T..T.CA....C..A........... | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 91.3 32 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : AACATGTTTATCTTGCGGTATCGCCCGCCTTGCAGCGTTTGCGTGATGGATTGGTACACGCTAAATAGTACAAAACGTGAAGTTTAATCAGAGAATTTAGTATAATCTAGTTACCATACTTACTTCTGTGCGCTACAATGGTGATTAAAAGATCTTTGGATACGTTGTTTTTGCTGTCACACTCTATGTGAGGGCGTGGATTAAAATAATTGTCTGTCATCAGGCTGTCGCTCCTTTTTTTATTTTGTCGCCGTATGAGCACATGGATTGATGCATAGCTCACTGAGAGGAGCATGGGAAATTCTTGGAGACGATTTCTGGTGCGAATGTGAAGCTCACATAAAAACCCTGGGTCTTTCGCACCTCGAAATTTGTCGAAAAGTAACTAGATTAGTTACCCTCAGTTAAAGTCAATGGTTGATCCAAGCCTTTTTGGAATCAGTTTTTGCGCTAATGCAAGGAATTGATATCATTAGGGTATGAATTACTGCATTTTCGTT # Right flank : TTGCTGTAGAGAGAAGTAAACACCCAACTGGCCGGCAGAATTTTACATACCATAAGAACCCACAATTCTTTCAAACGAACAGAGAATAACGTTACCAATGCACAGAAAAGCCCAATGGACCACCAGAAGCGAGTCCATTGGGCTTTTGTTCTCATACCAACTCAAATCTGCATATTTAGCTATTCACTCTCCACCCCGATCAAAAGAACCCTGCTTCTTGAAAACAATAGATTTCGCTAAGGACCCATAGCCAAAATAACATATCAGAGGAAGACGCTTTATCATTTAATATAGTCTTTCTATAATTATTGCGGATCTCTTTTCAAGTAGCTTTACTCCCACAAGACTATGGTGTTCTTTGTCCATGTCTGTTTCGAATCCTAAAGAAAAAACCGTCCACCTTTCGGTTGGTTTTAGGGGTACAAACATTTTACCGGGTTGACGACTCTTTCCCTACCATTTATTGGTCATCAACATGCCTGTAAAAATAGATACATTTA # Questionable array : NO Score: 8.54 # Score Detail : 1:0, 2:3, 3:3, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9872-10235 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPDG01000078.1 Paenibacillus polymyxa strain TH2H2 Contig_078, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 9872 32 90.6 34 .........T..A......T............ TTATCTCTCCTATATAGGTAGTAGGGGGTGTATC 9938 32 93.8 34 ............A....G.............. CTTGTCAAAATTCGGATCGTCAACGTTCCGTTTC 10004 32 100.0 35 ................................ CTCTTCCTTCGTGGCTGCGTACTCCGGCTGCTGCT 10071 32 93.8 38 .........T..A................... ATGCTTGCACAGTTCTAACCAGTCGTAAGCGAGGTTAT 10141 29 90.6 34 .......---...................... GTCGTAAAATGGGTCTTTATCACGGTCATATTTA 10204 32 90.6 0 .............G........A.......G. | ========== ====== ====== ====== ================================ ====================================== ================== 6 32 93.2 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : TCTACATAGACGTTTCTTGAAATCACGTTGTAGCCCCAAAAAAATTATATTACGTTACGTAGAGAGACGATATCTTAATGCTAGAATGCACTAGAAAATATCGCCCCCCCTCCTTGTATCTATTAATTAATATGTCCCTTCTCACCATTAAACATCACTACCTTCACTTGCTTCACTTTGGATAACCTATAATAGGATACCAACTTATTACTGGATTTTATAGACAGACTTATACTTATCATGCATTAAAACTTATCGCCCCTTCTGCATCCACTCGGTTAGCTGTTTTTTTCTTGATTATAGATTAGCAACTATACCTGGTGCGAATGCCAAGCTCACATGATTTCCCCGAATTATTCGCACCTCAGTTTTTGTTGAAATCGCATTGAATGTTAACAACACCTGAACTTTAATCAGTGATTTTAGTATAATCTAGTTACCATATTTATTGTTGTACACTACAATAGAGATAAAGGCTCTTGTATACGTAGTTTTTTGCT # Right flank : TAATAAGCTCGTCCCTCTTTTGAAGCTTCCATTCCCGGTCGCACTCTATATGATGCGTGGACCATGATGGAGCAGCCGTCACCTGGTCGTACGATTGGAGAGCGCCGCTTTATCCGAAATAAAAAGGTCTGATAAGTGGAGGAACGAATATTTTATGCGATTTGGAGGGTGGGCGACGATTTAGTACACTTCCGTATGAGATGAGTTGATCTTGTAGCAAAAAGATGCTTTTTACTTCCATGGATGCCATAAATACCCGCCGTTAGATAATGTGAATTATGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATGTGTCGAAAAGCAACTAAATCAGTTACCTTCAGTAAAAATCAAGGGGTGATCCAGGCCTTTTTGGCATCAGTTTTTACAATAATGTGTGGAATTGATATCATTAGGGTATGAATTACTGCATTTTCGCTGTCGCACTCCATGTGGGTGCGTGGATTGAAATCGAACCA # Questionable array : NO Score: 6.83 # Score Detail : 1:0, 2:3, 3:3, 4:0.66, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 692-1930 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPDG01000011.1 Paenibacillus polymyxa strain TH2H2 Contig_011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================================================================================================================================================== ================== 692 32 90.6 34 .........T..A..G................ GTCGTCTCTTCCACAACAGCGTTCACCTCGCAAA 758 32 100.0 35 ................................ GGCAGCTTTGCGCTCCAAATATAATTTCTTGCAGC 825 32 93.8 34 .............C.G................ ACCAAAGAGGTATTGTAGAAACGCCCCATCCGTG 891 32 93.8 36 .........T..A................... CACATCTGCCATAGGTAAGTACAGTCGTTGTGTCGC 959 32 100.0 35 ................................ CTTAGAAAAGCTTTAAAGCCAGTTTCACGGCAACT 1026 32 96.9 36 ...............G................ AATCTCATAGATAACTCAACCTTTTATTCGTAAGCA 1094 32 100.0 38 ................................ AAACACCCCTGGATAGTAAATAATCAAAGTTATTTTGG 1164 32 93.8 40 .............G...............G.. ACTACAAAACTTGTTTCACCGCATTCATAACATGTAGTAG 1236 32 96.9 35 .............G.................. AAGCTAAAAAAGAACTTGACGCGCAGCCCTTAATC 1303 32 96.9 36 ........T....................... CATCCACTCATCACCGCAATAAGGGCATTTTACAGA 1371 32 100.0 33 ................................ GTTGTAAGTCAATGTATAGTAGTCATTCACCTT 1436 32 93.8 35 ......T.....T................... TCTACAAATATCTCCATCGGATCACCTATATTTAT 1503 32 100.0 34 ................................ ACTTTTACCAGTAACGCTTTTTTAGTCAATGCAT 1569 32 96.9 163 ......T......................... TATGCACCAGTAGAAAACACTTGTCCGCCAACCTGTCGCACTCAATCAACTAGATCAGTTACTTTAATAAAAGTCAATGGTTGACCCGAGCCTTTTTGGCATCTGTTTTTGCGATAATGTGAGGAATTGATATCATTAAAGTATGAATTACTGCATTTTCGCT 1764 32 96.9 35 ...............G................ ACCCTCGACAAGATCCATCACGCTAACGAAATTGC 1831 32 93.8 34 .........T..A................... ATATTTACCTTTGGATAAATCTATGGGGATACCA 1897 32 68.8 0 .........T..A..C..C.C.CTT.....GC | CT [1912] ========== ====== ====== ====== ================================ =================================================================================================================================================================== ================== 17 32 94.9 43 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : GATTTCCCGTAATCGTCAATGGTAAGTCAGCCGAAGAGGGACTTCTAGTCGATGGCAGTATGTATATGCCTCTTTCTGTTGGAAGGCTGCTCATGCTCCCAGTGGGCTACGATTCGTCTAAAAAAGTCCCCACACTAGCTGGCAGGGCCGTATCGCAATTTAAAGTCTTCGCAGGAACTTCTTACGTCAAAGCCCGTGATATTCCAGTGGTACTTCCGGGCGCAAAAACTTCCTGGGACACCAAAAATAAAATCTTGTCCATTGAGTATTTGATCTAAATTGTTTTTTGTAAAATATAAAAGAATTAGCAGCTATGCCTGGTGCGAATGCCAAGCTCACATGATTTCCCCGAGTTATTCGCACCTCAGATTTTGTCGAAATCGCATTGAATGTGAACAACACCTGAACTTTAATCAGTGATTTTAGTATAATCTAGTTACCATATATACTGTTGTACGCTACAATAGAGATAAAGGCTCTTAGGTACGTAGTTTTTTGCT # Right flank : CTTCCATTCCTGATCGTACGATTTGGAGAGCGCCGCTTTATCCGAAATAAAAAGGTCCGGTAAGTGGAGGAACGGATATTTTATGCGATTTGAATGGTGGGCGTCGGTTTAGTATACTTCCGTGTGGGATGAGCTGATCTTGTAGCAAAGCATGTATTGTACTTCCATTAATTCCATGAACACCTGCCGTTTAGATAATATGAATGTTCTATGATAGTGCGAATGTGAAGCTCACATAAAACCCCCGGGTCCTTCGCACCTCGAAATTTGTCGATAAATAACTGAGTAAGTTGCCCTCAGTTAAAGTCAATGGTTAATCCAAGCCCTTTTGGCATCAGTTTTTGCGTTAATGTGAGGAATTGATATCATTAGGGTATGAATTACCACATTTTCGCTGTCGCACTCTTTATGAGTGCGTGGATTGAAATGTTAGTTGCTTTAAGGATTCACCATTTAGTTCTTCGTCGCACTCTTTATGAGTGCGTGGATTGAAATACTCG # Questionable array : NO Score: 7.73 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:-0.81, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [7-7] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2326-2700 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPDG01000011.1 Paenibacillus polymyxa strain TH2H2 Contig_011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 2326 32 100.0 35 ................................ GTTAGTTGCTTTAAGGATTCACCATTTAGTTCTTC 2393 32 100.0 38 ................................ ACTCGGCAGCAGCCGAGGGATCCGCTGGGGTTCCTACA 2463 32 100.0 38 ................................ ATTGTTTTGCAGCAGTCCACATGGCAATGTATGGTTGG 2533 32 100.0 34 ................................ ATAGCAAGGGGAAGTGAAGGCTGGTTGATGTGCA 2599 32 87.5 36 .........CA.G..G................ ACTACTCTGGTCTGCCCATTCTCAATATGATGCTTG 2667 32 81.2 0 ..........A.G............A...TGG | CC [2692] ========== ====== ====== ====== ================================ ====================================== ================== 6 32 94.8 36 GTCGCACTCTTTATGAGTGCGTGGATTGAAAT # Left flank : ATTGCGTCGCACTCTATATGAGTGCGTGGATTGAAATATATTTACCTTTGGATAAATCTATGGGGATACCAGTCGCACTCTATATGCTCGTCCCTCTTTTGAAGCTTCCATTCCTGATCGTACGATTTGGAGAGCGCCGCTTTATCCGAAATAAAAAGGTCCGGTAAGTGGAGGAACGGATATTTTATGCGATTTGAATGGTGGGCGTCGGTTTAGTATACTTCCGTGTGGGATGAGCTGATCTTGTAGCAAAGCATGTATTGTACTTCCATTAATTCCATGAACACCTGCCGTTTAGATAATATGAATGTTCTATGATAGTGCGAATGTGAAGCTCACATAAAACCCCCGGGTCCTTCGCACCTCGAAATTTGTCGATAAATAACTGAGTAAGTTGCCCTCAGTTAAAGTCAATGGTTAATCCAAGCCCTTTTGGCATCAGTTTTTGCGTTAATGTGAGGAATTGATATCATTAGGGTATGAATTACCACATTTTCGCT # Right flank : GAGCAGTCGTCACCTGGTCGTACGATTGGAGAGCGCCGCTTTATCCGAAATAAAGAGGTCCGATAAGTGGAGGAACGGATATTTTATGCGATTTGGAGGGTGGGCGACGGTTTAGTACACTTCCGTGTGGGATGAGCTGATCTTGTAGCAAAAAGATGATTTTGAATCAGTTACCTTCAGTAAAAATCAAGGGTTGATCCAGGCCTTTTTGGCATTACTTTTTGCGACAATGTAAGAAATTGATATCATTAGGTTATGAATTACTGCATTTTCGCTGTCGCACACCATCTGGGTGCGTGGATTGAAATCATTAGAAAATGGTAGAGTTTATCTGTTATTGCTGTCGCACTCTATGTGAGTGCGTGGATTGAAATGGGCAAAGCCAAGATATAACAAGCTACTTCATATTGTCGCACTCTATGTAAGTGCGTGGATTGAAATTTTTTGATTTTTTAAAACAATTTTGTCAAGCTTGTCTAGTCGCACTCCATGTGAGTGCG # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2976-3275 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPDG01000011.1 Paenibacillus polymyxa strain TH2H2 Contig_011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 2976 32 87.5 34 .......A.C..C..G................ CATTAGAAAATGGTAGAGTTTATCTGTTATTGCT 3042 32 100.0 35 ................................ GGGCAAAGCCAAGATATAACAAGCTACTTCATATT 3109 32 96.9 38 ..............A................. TTTTTGATTTTTTAAAACAATTTTGTCAAGCTTGTCTA 3179 32 90.6 33 .........C...............G....C. CGGAAGGCCGGCTTATTATCCAGGGTCTCTGCG 3244 32 84.4 0 .........C...G.....T..A.......G. | ========== ====== ====== ====== ================================ ====================================== ================== 5 32 91.9 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : TGAGTGCGTGGATTGAAATATTGTTTTGCAGCAGTCCACATGGCAATGTATGGTTGGGTCGCACTCTTTATGAGTGCGTGGATTGAAATATAGCAAGGGGAAGTGAAGGCTGGTTGATGTGCAGTCGCACTCCATGTGGGTGCGTGGATTGAAATACTACTCTGGTCTGCCCATTCTCAATATGATGCTTGGTCGCACTCTATGTGAGTGCGTGGACCATGATGGAGCAGTCGTCACCTGGTCGTACGATTGGAGAGCGCCGCTTTATCCGAAATAAAGAGGTCCGATAAGTGGAGGAACGGATATTTTATGCGATTTGGAGGGTGGGCGACGGTTTAGTACACTTCCGTGTGGGATGAGCTGATCTTGTAGCAAAAAGATGATTTTGAATCAGTTACCTTCAGTAAAAATCAAGGGTTGATCCAGGCCTTTTTGGCATTACTTTTTGCGACAATGTAAGAAATTGATATCATTAGGTTATGAATTACTGCATTTTCGCT # Right flank : TAATAAGCTCGTCCCTCTTTTGAAGCTTCCATTCCTGATCGTACGATTTAGAAGCGACGCTTTATCCAAAGTAAAAAGGTCTGATAAGTGGAGGAACGAATATTTTATGCGATTTGGAGGGTGAGCGACATTTTAGTGCACTTTCGGGTGGGATGAGCTGATCTTGCAGCAAAAAGATGATTTTTACTTTCATGGATGCCATAAACATCCGCCGTTAGATAATGTGAATGTTCTTTTATGGTGCCAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATGTGTCGAAAAGCAACTGAATCAGTTACCTTCAGTTAAAGTCAATGGTTGATCCAAGCCTTTTTGGCATCAGTTTTTGCGCTAATGTAAGGAATTGATATCATTAGGGTATGAATTACTGCATTTTCGCTGTCGCACTCCATGTGAGTGCGTGGATTGAAATGATTCTGTAATCTCTCGCAATAGGTCATCTGGAAGTCGCACTCTATGT # Questionable array : NO Score: 6.67 # Score Detail : 1:0, 2:3, 3:3, 4:0.60, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 3695-3859 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPDG01000011.1 Paenibacillus polymyxa strain TH2H2 Contig_011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 3695 32 100.0 34 ................................ GATTCTGTAATCTCTCGCAATAGGTCATCTGGAA 3761 32 96.9 35 .........T...................... TCGTTTATCGTTACTCCGCCGCACGATTTTATATG 3828 32 93.8 0 ........................T.A..... | ========== ====== ====== ====== ================================ =================================== ================== 3 32 96.9 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : GTGCGTGGAGTGAACTCGGAAGGCCGGCTTATTATCCAGGGTCTCTGCGGTCGCACTCCATGGGAGTGTGTAGATTGAAGTAATAAGCTCGTCCCTCTTTTGAAGCTTCCATTCCTGATCGTACGATTTAGAAGCGACGCTTTATCCAAAGTAAAAAGGTCTGATAAGTGGAGGAACGAATATTTTATGCGATTTGGAGGGTGAGCGACATTTTAGTGCACTTTCGGGTGGGATGAGCTGATCTTGCAGCAAAAAGATGATTTTTACTTTCATGGATGCCATAAACATCCGCCGTTAGATAATGTGAATGTTCTTTTATGGTGCCAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATGTGTCGAAAAGCAACTGAATCAGTTACCTTCAGTTAAAGTCAATGGTTGATCCAAGCCTTTTTGGCATCAGTTTTTGCGCTAATGTAAGGAATTGATATCATTAGGGTATGAATTACTGCATTTTCGCT # Right flank : TTGGAGGCTGTAACCTAACGATATGGAACCAGCACTGGAAGAATTTCGAGGATTATATGTTGACCATTATGTCCTTACATTGATTAATAAAAAATTGATTCATAGTAAAGGATTTTACAAAAAAGAAAATGAGGCTGTCATGAACTATATTAATGTATTTCGGGTTTGACCCCATTTTGAAGTTCGAAGTATGAATCCGGAGAGTTGATACCAAAAAGAAGACAGCTTGCGCTTCTACAACTTAGGAGATGACTACAAAAAGAAAGTAGAGCATATAGGGGCTAAAGAAACTTATGACTTGGAAAGCGCACTCGATTTGTAAGGTGCGAATGTGAAGCTCACATAAAAACCTAGGGCCTTCGTACCTCGAATTTATCGAAAATCAACTGGATCAGTTACTTTCAGTAAAAGTCAATGGTTGACCCAAGCCTTTTTGGTATCAGTTTTTGCAATAATGTGAGGAATTGATATCATTAGGGTATAAATTACTGCATTTTCAC # Questionable array : NO Score: 8.52 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 548867-549290 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPDG01000010.1 Paenibacillus polymyxa strain TH2H2 Contig_010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 548867 29 100.0 37 ............................. TATTTATAAGTTGTTCCGCATTCGTCCGTATCTGGCT 548933 29 100.0 37 ............................. TTGAACGAGGAACTTAAACGCGCGTCCTTTGAAAGTT 548999 28 96.6 38 .....................-....... TAATGATTGAATAAACTCTTCCTCGTTTCTGCAAGTCA 549065 29 96.6 37 ................C............ TACGTCTGTGACGTTTCCCGGCGGACATGGAAGATCA 549131 29 100.0 36 ............................. TCTGTTAAGGGCTTGCCAAACGTCTTGATTATACTC 549196 29 96.6 37 .........T................... TTTTGATGGCTCTGGCGATGCTGCAACTCCATATATC 549262 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 98.5 37 CTTTAACCACAACATGTGATGTATTGAAA # Left flank : ATTGTAGCCCTCCTTGGTGAGTGCTTTGAGCAGCATTTCAGCAATGGATAGATCGTCTTCAATAAGTAAAATATGCTGTGACATAGGTGTGGAACACCCCTAATTTTTAGATTAGCTCGTGTGACGAACTGTATCTGAATTATATAGAGCGGTGAAGGGGATTTCCATAAAAAATATTCATTGAAGTTGAGTGGAGAATGTTCGTAGGAGATTTAAAGGGGCGTTTTTCCCGATGCATTGGCTTTATTTCAAGAATGAATCTCAACGGTGTACATCCAGTGATGTTCCTAATAAATTAAGGTATTTCATTGAGCGATGTAGGTGATTTTTTCCCAGCCTCTTAAAAGGGTGAAACGTGGAATTTCTTAGAGGTGCAAGGATTTAGACGTTTTCCTCTACAATTTGAGGGGAGGGGTCTACGGTTGGGAAAAAATTGCGAAACCCTTGTGGCTGTAGTAAAATAAGCACATTATTAAAACTGAAAGCTTGATTCTACTAGC # Right flank : AATACTCGGCCTCGTTTCTGCAAAAGTGCTTTTTCGATGCTCGACGATCAAAATTATTTAGCTTCATCCTTCTATGAACTCCATTCTTTTTATTGAAAAAACCTCCTAAACCACTTAAAGTGGTCAGGAGGTTTTTGACATTTGCATGCATTTGGGTCAGCTACTAATTGGGTATTCAGAAAGAGGTAGCTCATAGCTATTAGTAAGAATATTTCCGAACAAAAAGTAAAAGAAACATCGGATGTTACGGTCATAGTCTAGTTTCAGTATTTTAAAACTAGAAATATAAATTTAAATACACAAGTGTTTTATTCATTATGCGCATTATTTTTTTCTGATGCATTTACATTATACTCTTAAGTAAGCGATCTCAACATAGACCAAAGGTCTATGTTTTTCCCAACCTTATAAGAGCTAGAAAGAGGTAACTCCTTAGAGCACCAAGGGATACAGCTATTTTTTTAGCCCTTGGTAAAAAGCGACCTACGGTTGGGAAAGAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACCACAACATGTGATGTATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 2 549857-551129 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPDG01000010.1 Paenibacillus polymyxa strain TH2H2 Contig_010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 549857 30 100.0 36 .............................. CTGGAAATTTTCACGAGTGTAATGAAATTGTAATAA 549923 30 100.0 36 .............................. TTGTCATGCATCCAAAGTAAATGAACATGTGGATGC 549989 30 100.0 37 .............................. TACGATTGGTCTGTACAAAGCCAGCAAGATCACCTAA 550056 30 100.0 35 .............................. TTCCCGTCTGTAAGGTTTTTAGTTGTTCCCCCGGT 550121 30 100.0 34 .............................. AACAGTGGTTGCAGCAGCCAAAGCAGGCCATTCA 550185 30 100.0 36 .............................. AAGTTATAGCGGGTTCTAATTGCTCCGAAAGCAAAA 550251 30 100.0 36 .............................. CCCAGTTTATCCTCATCACCGGATTTCATTACATCC 550317 30 100.0 36 .............................. GGAGATGCGGTGCTGACACGTTCCTCGATCTGTTCA 550383 30 100.0 36 .............................. ATGCTGTGGTCACACCTGGTAGGCAGTAAATTTGTA 550449 30 100.0 36 .............................. CCAATAAACCAACGGGGCCTGATTTCACGTAATATC 550515 30 100.0 36 .............................. GGTCTTGGCGTAGTTGCTACGTCCTTTACGCTCTGG 550581 30 100.0 36 .............................. CCGGAAACATTTGGGTGAGATTGTCAATTTAACGTC 550647 30 100.0 36 .............................. GGATATACAAAGCCACAGGCTTGGAGTAAATCATAG 550713 30 100.0 36 .............................. GGTTTGAATAGCCACGCTAAAAAGAGAAGAATGGCC 550779 29 83.3 33 T............G...A.......-..G. TTTGGTCAATTTCGTCAAGTACATCATTCATGG 550841 30 96.7 35 ...................A.......... CTGTTACCTGCATCAATACCATCGGTTACGGTAAC 550906 30 96.7 35 ...............A.............. TATGTGAAAATCCGTCACCGATCTTAACAATTGCA 550971 30 100.0 36 .............................. TGCTGTCATACCGCTGCCGCATGTACTGCTTGGGAT 551037 30 100.0 34 .............................. TGGGTTGCCAGTCAGCGCTTGAATCGTAGACATT 551101 29 90.0 0 ...A............-.......C..... | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 98.3 36 CTTTAACCACAACATGTGATGTATTGAAAT # Left flank : CCTTCTATGAACTCCATTCTTTTTATTGAAAAAACCTCCTAAACCACTTAAAGTGGTCAGGAGGTTTTTGACATTTGCATGCATTTGGGTCAGCTACTAATTGGGTATTCAGAAAGAGGTAGCTCATAGCTATTAGTAAGAATATTTCCGAACAAAAAGTAAAAGAAACATCGGATGTTACGGTCATAGTCTAGTTTCAGTATTTTAAAACTAGAAATATAAATTTAAATACACAAGTGTTTTATTCATTATGCGCATTATTTTTTTCTGATGCATTTACATTATACTCTTAAGTAAGCGATCTCAACATAGACCAAAGGTCTATGTTTTTCCCAACCTTATAAGAGCTAGAAAGAGGTAACTCCTTAGAGCACCAAGGGATACAGCTATTTTTTTAGCCCTTGGTAAAAAGCGACCTACGGTTGGGAAAGAATTGCGAAACCCTTGTGGCTGTAGTAAAATAACGACATTGCGATTTTGGAAAGCTTGATTTTACTAGC # Right flank : TAAGAAATTGTACGTGTCATTTATTTTGGTTGCTATCCTTCAACTTCAACATAAAACGTACTGAGTCCTAAGCAGTAGGGAAGAATTGTTTTGGAGAAGCGTAAGCGTCTATCTTTATTCCGATTTTAATCCTCGAAGGGTTTATACAATCCAGAAAATCCAGAAAATCCGCGGATAACAGCGACGGAAGGACAATCTGCACGTGTAGCAATTTAAATACCGTTGCATTTTATTGTAAAAATATAATTATAATGAGAAATATATTTACAAATCATGGAGCGAGGTCTATACTCTATAGCAGATCAGGAGGTGAACGTATTGTATTATAAAATTCACATAACAACGTTAATCAAACAATCATCTCATCATCTGGAGATACCGGAGCGTATCGGAGCCTGGATTGGTCGGGCTGGGTTGAAGGACGAAGCGTTGAAGCAGACGCACTACGACAAGGACTACAAGCACTATACATTTGGGGCGCCTTTTCCGCGTGAAAAGGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACCACAACATGTGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 3 560841-561665 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPDG01000010.1 Paenibacillus polymyxa strain TH2H2 Contig_010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 560841 30 100.0 36 .............................. TTTTATAAATTGATTGCTAATAAAATCGAAATCCAT 560907 30 100.0 36 .............................. TATGGAAAACAGACAAATTTTTGCACCCGAGATACT 560973 30 100.0 36 .............................. CGGCTCAGGCTATTCTACTTCTACCACGGAAGGGAG 561039 30 100.0 36 .............................. ATTTAATCTTTGAGTTTGCTTTTCATATTTTGCTAA 561105 30 100.0 36 .............................. CAGTGAGGAGGGGCAAAAGATGGCATTTGTAATAGG 561171 30 100.0 37 .............................. TGCGGGAAGGTCGGTGGAGAATGGGTTTCGTGAGGCT 561238 30 100.0 36 .............................. CTCTTTTCCCACCTTTTATACGAACAAGTATTTGCT 561304 30 100.0 37 .............................. TTAGCTATAAAAAACGCAACAGGAATTGCCGCAGCAA 561371 30 100.0 37 .............................. GCGATGTAAAGCAAGTCCTGGCATTCATGAGTGACTA 561438 30 100.0 35 .............................. TTGAATTAGACCGCCTTTTCTATTTTTTCTTCTTC 561503 30 100.0 37 .............................. GCGTCTTGGTTCAAGTTCTTAACAAACTGCTGCATGA 561570 30 100.0 36 .............................. CGTGAATGCGCTGGGTTCTTTATCTCTGCTTTCTTG 561636 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 100.0 36 CTTTAACCACAACATGAGGTGTATTGAAAT # Left flank : GCCCTTTGTCCCTTTCTTGGAAAAGGAGCATAGATAGAGTTATGGCGAAAAATTACAACTATGTTATCTTGGTCTATGATATCGGAGAAAAGCGAGTGGGTAAGGTATTTAAAATATGCAAGAAGTATCTCGTCCATTTTCAAAAATCAGTGTTTCGGGGTGAGATTACACCCGCAAATCTAATTCAATTACGGGCGGAGTTGAAAAAAATAATTGATGAGGGAACAGACTTTGTGGCTGTGTTTAAAATGACTGGCGATTATGTTTTCGATGAGGAAATCATCGGTGTCCGTTTGAATGATTCGGAGTCCTTATTGCTGTAATTTTCCCAACCGCCTTAATGGATAGATAGCCTCTACTTCTTACAGCCACAAGGGTTATCGGAGATTCTCTGTGCAATTAGCTGCATCCGTCTTCCGGTTGGGAAAAAATTTCGAAACCCTTGGTGCTGTAGTAAACTAAGCACGTTGCTGAAATAAAAAAAGCTTGATTTTACTAGC # Right flank : TTATGATCCGGGTGCGGGTGTTCCAAAAGGCGACTTGTCTTTAAGCACAACATGTAATCAAATTACTGGCAGTTGAAATTCCCCTATCCTATACTGAAATAGTCTATAATCCGATGTTTGGAATACGGTGTTATAATTTCCGGGGCAAGCCTAGTGTGAGAGATTAGGGATGTCAGATCACGAGCTACGGTACAGAACCGTCAATAAAGGAGAGCAATGATGTTTGTTATACGGGGAACCCAAAAACTGCTGAAGGAATGGGAGACTGAACCACTTCAAGTTGATATTTATCCGCCTTTGAATAGTTGGCATGCCAGCTTGTTTTTATTGAACCGGAGAAAAAACATTGTGTTTATGCATGATATTTCCCGCTTAAGCGTCACGCTGTTTGGGATTAAAAAATCGCAGTACAAAAACCTGCCGTCTCTTTTTGTACAAACCTTGAAGGAATTAATGATCAGCGAAGGGTTTGATGAACAGATCGTTAAGGCATACATACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACCACAACATGAGGTGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA //