Array 1 69828-69461 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZT010000021.1 Listeria booriae strain FSL L7-0051 NODE_21_length_73699_cov_27.886180, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 69827 36 100.0 30 .................................... GTGTCGAACATGATAAAGATGTTGCGGAGC 69761 36 100.0 30 .................................... ACTGATGGTGGTGTTGAACTGAACATCGAA 69695 36 100.0 30 .................................... CGTCTACTAGCATTTGTGTTTCTTTAACAA 69629 36 100.0 30 .................................... AATCACATGTTAAAACTCGTTACGTTTCGG 69563 36 100.0 30 .................................... GCTTGAAAATGGTGAACAAACGCATTCCAG 69497 36 83.3 0 ..........C...............TG.A..C..A | A [69466] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.2 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : GTTTTTCTTGGTGTAATACCGCTGACATTAATTCTGTTATTTCTTTGTTGATTGCTATTTTATGTTTATTTTTTTCTTTTTCGTTGAGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACGATAGTTCTTCCATCAACTCTCATTTTGGTTATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCACTTTCATATGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTGCGCAAAACAACATTCATTGGCAATTACCCACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : TCTATTTTACTTTCAACAGTTTAACTATACCAAATTATTAGTAACTCTGCATCTTCGCATAATCACACGTACTAAGTAACTGTATTTAGCTATAATTATGGCTTTTATAATACGAAACGTATTCATCAATCTTTAGGATACTTAACACCAAATGATTTTGAAAGAAAAGCGAATTAAATTCTATTTATTTTTGTCCAAGATATTGACACCACATCAATATCGCCAATCGTTCACTTTGCTCATCTAATCATATCTAAAAAGGATAGGAAGTCTTTTGCAATCCAATAAGTATTTTCTTCATCGGTTGATTCTTCAAACTGAAATGAGTCATCCCAATAATAGATACCTTCAAATTCTCCCTCGCAAATCATTACAATCATTCCTTGCATGAGATCATCGCCAATAATTATTGAACCTTCCATCATATCTTCTTTTAGTTTTTCCATCCACGTCTCTATGTTAGAGGCACTTTCCCCAGTATTAACACCATATAATACATC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 73514-73280 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZT010000021.1 Listeria booriae strain FSL L7-0051 NODE_21_length_73699_cov_27.886180, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 73513 36 100.0 30 .................................... AACAAAGAAAAGAATTCAACGTTACCGCAA 73447 36 100.0 30 .................................... GAAGATGCGATGAGTACCATGTCTGATCAA 73381 36 100.0 30 .................................... GTTCAATCTACGTGATAAACGATAACGGCC 73315 36 88.9 0 ...........................T.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.2 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : TAGATCCGTTTTTTATACGGGCTCGAAGCCCAAGAGGCTGGTCGATCTATACTTCACAACTACTATAACAAAAAAATAGTAGGCAAGACCATGGCCGTGGTCTTACCTACTAATCTTAGTATGTTTTCTATGGTTACTAACCTCCGATTAATTAAAAATAACTTATCCCACTTATCCACATTAGA # Right flank : TTTATTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAGCGCCTTCACAATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTGTCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATCACCAATCTGTGGTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGATCATATTTAAGTATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATTTTTTGGTGATAAATAATTTAAATGCGCTATACGATTTCTGTCATTTCTCTTAGAAACAAACAAGTTCTCCCCTACCATGAATTTATGAAGTTTTTCAATATGTTTTGGCCATGTTTTCCTGCGTATTTTTTTCCAATATTTTTCAGTAGTATTAATCCAGCTATCCACTCTTTCGGTA # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 95493-94935 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZT010000005.1 Listeria booriae strain FSL L7-0051 NODE_5_length_126046_cov_27.836689, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 95492 30 100.0 38 .............................. AGTTTTGCAATATTGGTTTGACTGCCTTGTTATGCAGG 95424 30 100.0 36 .............................. GTCGAACGCTTAAAATAAGGAGGCGGCGAGTATGGC 95358 30 100.0 36 .............................. TTGATTTCGCCCCGACTTTCCTATAGAATGGTTATG 95292 30 100.0 36 .............................. AAGGTTCGGAAGCATCATGTTGGACATCAAACGGCA 95226 30 100.0 36 .............................. TCAAATAAGAACGGTCGATTTCGTCGTAGCAAATGA 95160 30 100.0 37 .............................. TTCTGTGCATTTCGGCGATGATGTCTGACTTGTATTG 95093 30 100.0 36 .............................. ACATTCGCTTTAGACACAGCACCCGATTCGTTAGCC 95027 30 100.0 34 .............................. CCGTGACAGTTCCCGTTAAAAGCGCTGTGGATTC 94963 29 86.7 0 .............C...A.....-.....C | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 98.5 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GCACAAAGAAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGGCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCTTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGCTAGTTAATAAATATACATCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAAGCGGGGTCAAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGGGGCATCGACAGAGTTTTGTTAAGCGTTGATGTGATTGGATTTGAGGCTGTTTTTGGAGTTCGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGAGAGTAGGCGTTGATGGGGTACCT # Right flank : CCTTTTATGATTCTAGCAGATATTCTAACCATAGAAATAAATTGAATCAAATCAAATCAAATCTTCTTTTTAGAGGTTGCTGACAATATGGTTAACGATAATTAATTGGTGAGACTGTGATTGGAACTGCATATGAGAAGTTTGAAAGAGAAGCTTTAAATACACATATTAGGAAAAATGATATTAAGTGAGAAGCATCAATCGGTACATAAAAAAATCTTAAAGCAACTAATGCTAAGTGTATAACTTCAAAAAAGAAGGAATTTAGAGGTACTTTTAGTCTATTGTATAAGAAGTTACAGTTCAAGCTGATGCTGTTTGCGGTGCAGATGGAAGTTTTTCTTCATGAGGAGCGAGCGGGTTACCGTTAGAACTTTCGAAGGTAGCGTTTCTATGAGTCTAGGCCGTTAAAACTTTGATTATGTTATCATTGAACGATGAGCGAGATAGTGAAGGCAATATATTTAATCTTTGTGAAAACGTTTGCGATAACATATTTT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 45302-46121 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZT010000015.1 Listeria booriae strain FSL L7-0051 NODE_15_length_90769_cov_24.279605, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 45302 30 100.0 37 .............................. GCCTGTGATTTAATTCAGAGATACAATCGGGATAACG 45369 30 100.0 35 .............................. ACCACCATATTGCTTTCTGACGGCAACATATATCC 45434 30 100.0 36 .............................. AAAGGAATACCTGCTTTCAAAAGACCTTTACAGTGT 45500 30 100.0 34 .............................. GCCATGAGCTTGAAATTAATGGAAGCAAATTTGG 45564 30 100.0 38 .............................. TCGTTCGATGTGAACAATGTCGAATCACACAATTCTAC 45632 30 100.0 36 .............................. CTGATGGATTAGTAAGCATACACTTTCAAATTGATA 45698 30 100.0 35 .............................. TGTCTTGCTTACCGTCTAAGAAGATACCCTTTCCG 45763 30 100.0 34 .............................. GTGGAAGAACTAGAAAAAGGATATATGGAACGCA 45827 30 100.0 36 .............................. GAAAAAAGTGGTGATACAGTTAGCATATGGGTTGAC 45893 30 100.0 36 .............................. GCAAGACTTTGTTTTTGTGCAACCGCATCTGTAAAA 45959 30 100.0 37 .............................. TTTGCTAAATACGGTATTTGAGAGATACGAGGCGCAT 46026 30 100.0 36 .............................. GATTACGATGCATCAAATCATTTTATTGCCAGTATT 46092 30 96.7 0 .....................G........ | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 99.7 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAGCTTTGAAGTGCTAGATAAAGAACGCCTCGTTCAGAAAACAAAATTTGGCGCAAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGCAAACAATTCCTGCGAATAGCGCATTGATTGTGCAAGACGGGAAGAAAAAGATAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATCTTTGTTATGCATTGGTACTAAAAGGGTTAAGCCTATTTTCGGAGTTTGGATTGTAAGGTTTGAGGGCAATAATTTAGAATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : TGTCAGCGAGGCATACTTTTCAGAGTTGCAAAACAGGTTTTATCTAAAGTAGGAGTTAAAACATAATAAAACGAATTGAATAACAAGAGGGTTAGTATCCATTAGTACTGAACAATGGATACTAACCCTCTTAATCTATTGGCCTCTCTGATGAAAATTTTTAGTATGCAATTATCTACTCAAACTGACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTTGTGTTAAGGATGACCGTTTTCGCATAGTATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGCCCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACTATTTGATTTGCAAGAGTGACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAATG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 105521-103192 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZT010000008.1 Listeria booriae strain FSL L7-0051 NODE_8_length_124447_cov_26.835996, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 105520 30 100.0 35 .............................. ACGCTTGAGCTAGTTCCAAAGCCTCATTCTTCAAA 105455 30 100.0 36 .............................. AACAGATTTGCTACATCCGCATCTAGATATCTGGCA 105389 30 100.0 35 .............................. CATGAGCTCACTCTTGACTTTACTGGAAGTGGTAG 105324 30 100.0 36 .............................. ATCGCAGCGGCTGTTCCAGCAAGCCCGACAATTATT 105258 30 100.0 36 .............................. CGGTACGAAAATTTAATAAAAGAGCTTTCTGACTTC 105192 30 100.0 36 .............................. AGTCCTGCGGGGGTTAATAACACCCTGCGGACAGGT 105126 30 100.0 34 .............................. ACAACAATACTAGCAACGGGGAGCCATTTTTTCG 105062 30 100.0 35 .............................. GTACTATAATTTATATCAACCCCTGGCTCTATATT 104997 30 100.0 36 .............................. CTGTATGGCAACTGCTTCAATTGGTTTTTTGACAAC 104931 30 100.0 36 .............................. TAAAGTGAGTACGACGGGATGGGACGACAAGGAAAA 104865 30 100.0 36 .............................. CGCTACTCGGCAGGCTTTTTAAAGTATTCGCAACGA 104799 30 100.0 34 .............................. ACTCTCTAGTACACTTTAAGAGTGTTTCATTTAC 104735 30 96.7 34 ........................A..... CTGGCTTTGCGGATTTACTACGTTTAACCTTCGC 104671 30 100.0 35 .............................. AGCACCAACATGACGGCATAGCCGAATGGCGGTAT 104606 30 100.0 34 .............................. CCAGCTTCCTTAATCTTAATTAGCGTCTCTTTCG 104542 30 100.0 36 .............................. ATTGACGTGTATACGAAAGTACTCGCTGGTATAGGC 104476 30 100.0 36 .............................. AAGTCTCGCTGGATGTGGCCGCCAAACATCAGAGTA 104410 30 100.0 36 .............................. CAGATTGCCCTTCACGCTGTCCGCGTCTAGGGTGAC 104344 30 100.0 37 .............................. TTAATCCTCATTATTACGATATTTTTTTGGAGTATAT 104277 30 100.0 37 .............................. GAAATAAGCTTTCCGTAACTATCATACAGCCCATCAA 104210 30 100.0 36 .............................. AATTTTGTGGTTTAAGTGTAATTTTGACAGGTTGGT 104144 30 100.0 36 .............................. CACTTAGCAAAAACAGTGTGGGTATATCTTCGCTTC 104078 30 100.0 35 .............................. CACTCTCTAAGAAAACAACTTTAATATCTTCACGG 104013 30 100.0 33 .............................. TCATTTCCTGAATCATTTTTCTTTTACTACTTC 103950 30 100.0 37 .............................. AAACGCGTGATATCAATGACAAGCACGGCATCATATT 103883 30 100.0 36 .............................. TTGAAAATGAATACCGCTTTGTTGGGTAGCGTGATC 103817 30 100.0 36 .............................. ACGTTTAGTGTTATAGCTTGTCCATTAGCGTAAGGT 103751 30 100.0 36 .............................. CAATGACAGCAAAAATGCGGCTGAAAGTATGAGTGA 103685 30 100.0 36 .............................. TAGTGATATAATAGCATCTACTGCATGATAGAAAGC 103619 30 100.0 35 .............................. TTGCACCTAATTCTTTGATAGCATCCTGTTTGGAT 103554 30 100.0 36 .............................. ACCAGTTCGATCTGATGTTTTAGCTCCAATGGATTG 103488 30 100.0 36 .............................. TATGATGCTATGAAAGTTAAACACAAATGTCTCCTT 103422 30 100.0 36 .............................. CTGTGTGGCGCTTACAGGCTATGACAGTGGCAACTA 103356 30 100.0 36 .............................. GATGGACGAATGACGAATTCCACATATGAGGGAATA 103290 30 93.3 35 .................A....G....... CCAATCCACCAATTTTCAGTTTTACGGCGTTGCTC ATAA [103269] 103221 30 83.3 0 ........TC...C...A......A..... | ========== ====== ====== ====== ============================== ===================================== ================== 36 30 99.3 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGGTATGTATATTATCTTGATTTACGACATAGCAATGGATAATGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCGGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGATTAGATTTAAGGCTGTTTTTGAAGTTCGGCTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TAGGAAAAGGGCGCACTTATACACCCTGCTTTCCCAAAGTACTATGAAACATAAATCGATCTAATTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTCCGTAGCCAGTACAAGCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCATGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTGTACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATGTCACGCGTATCAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 17626-15549 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZT010000009.1 Listeria booriae strain FSL L7-0051 NODE_9_length_120599_cov_26.013447, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17625 36 100.0 30 .................................... TGTCTGTTGACAACTTAGCTCGCGAAATGA 17559 36 100.0 30 .................................... CAAGGTTGGTACTATACCGCACCGTACTGG 17493 36 100.0 30 .................................... ATAACGGAAGGTAATGCCGTTATCCAAATG 17427 36 100.0 30 .................................... TAAATGAGGCTGGATTTGTGAGTGAATGGG 17361 36 100.0 30 .................................... ATAAAAGTGACACAACAAGCCAAAGTTAAG 17295 36 100.0 30 .................................... AAAACCTTGCGAACTCACCCAATGACGATG 17229 36 100.0 30 .................................... CGAATAAGCATGATATCATCGGCAGAATGA 17163 36 100.0 30 .................................... CAGGTGAGTTAACAATATTGAGTGCCTTTG 17097 36 100.0 30 .................................... TCTTCCAGTGCAATCGCGGAATCACTGTCA 17031 36 100.0 30 .................................... TAATCGTTGATGAGATGATGAAAGACCCAG 16965 36 100.0 30 .................................... TCGTAGTCAAAGGGAACTAGCCGAGGAGTG 16899 36 100.0 30 .................................... AATTACAACGCATTATCAAGTTCTATGACG 16833 36 100.0 29 .................................... CTGATAGATACAATGAAACGGTCCATCAA 16768 36 100.0 30 .................................... CTTCTATGATTGCTAGCGATAACATAGGTG 16702 36 100.0 30 .................................... CCAAAATCAGCGCTTGTAGTGTACCGCCAT 16636 36 100.0 30 .................................... TAGCAGCTCCTGAAATAACACCATTTACCT 16570 36 100.0 30 .................................... TTTTAATGCAATATGTGATATATGATGATG 16504 36 100.0 29 .................................... ATGCTTGTAATTTTTCACGCTGTGCAGAT 16439 36 100.0 29 .................................... ATGCTTGTAATTTTTCACGCTGTGCAGAT 16374 36 100.0 30 .................................... AAAAATAAAGAATGATACATCTATAGATAA 16308 36 100.0 30 .................................... TTTATCACTTGTGGAAAGGTGCCGAAGTAA 16242 36 100.0 30 .................................... AGACCGTGCAAGCGATAGCTGCAATATTTT 16176 36 100.0 30 .................................... GATGCGTTTTTAAGTCTAGGAACAGGGAGT 16110 36 100.0 30 .................................... CGGTGCTGTCAACGGCTTCACTGTTGCGCT 16044 36 100.0 29 .................................... CAATAGCGGATTTAATTGCGAAGTAGGCA 15979 36 100.0 30 .................................... CGCAGTTACGAACGTTAGCAAAAGCGTGGT 15913 36 100.0 30 .................................... ATAACGGAAGGTAATGCCGTTATTCAAATG 15847 36 100.0 29 .................................... CTCACACGTGTAACTAATCATCTTGTGAA 15782 36 100.0 29 .................................... TCGCTCCGGCAAGGTATTTCTACTCGACA 15717 36 100.0 30 .................................... TTGGTGCATTCTGATTCGCCAAACCTGACG 15651 36 100.0 30 .................................... TGAAAAACGAGGTGATCGGTAATGCAGACG 15585 36 80.6 0 .......................AAA.G.....CCA | C [15553] ========== ====== ====== ====== ==================================== ============================== ================== 32 36 99.4 30 ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Left flank : ATATTATAAAACTAATACTGGGTATGAGTATAACAAAACCAACTCTTGTGTTTGTGGAGGGGTTTAGGTCTGGGCTGAATGATATAGAATGTGCAAATGCAGAAGGAATGTTACGGGAAATGGCTAGAAGAGGTATGCATATTATTGTACTTGATGATAATTTGGTAGGTGCTTCTGTAAATTACTATTACCAAGATTTGATTGTAAATAAATTAGAAATATTGGGTGTTAAAAAGATTATTCTAGAATCCAGCCCTATCTTGAGTAGCTCTGAAGACTTTCTACAAGCGATAGATTGGTCTATAGGGGCTGTGGATAAGTCGAAGGGGAAAGTAGTGGAATTGGAGCTGCAGTCTGTGGATAACTTATGTGTTTTTACATTGATCTATTTAATTTTCACATTTTTAAAATGGCCACTAATTGTTGATTTTAGAGGGATTAGGAGTGATTTGATAGAATATCTTGCAGAGATTGTGAGTGGTGAGGTATAATTAGGAGGC # Right flank : TGGGCTAAAGAGCAACATAAGAATTTCATAATGTGTTGCAGGTAATTGCCACAAATGTAAAGGCATATGTTAAACTATTTATTAAAACAAGCAACAGTCGGAGGCGTATATATGCTTTTTTTAGACAAAACAATCGAATTAAACGATACAGAAATGACGATTTATCACTATGTAGTCGGCAATTTAGACACGGTCATTTACATGCGGATTAGGGATTTAGCCGATGCCACCCATGTTAGCACCACGACGATTTTACGATTTTGCCGGAAGTTTGGGTGTAACGGTTTTTCCGAGTTTCGTGTGAAGCTGCAAATGTATGCGCAGAATCGGACGAAAATAAGTGTGGATATGTCGGATGAGACAACATATATTGACTTTCTAAAACGCACAGCTCAGCCTGAATTCAAAGCGAATATTGCCCAGTCTGCAAAAATTTTGCGCGATGCGGAGTTGGTTTTATTTGTTGGCATCGGGGCGTCCGGAATTATTGCTGAGTATGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //