Array 1 1691-16 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALIP01000022.1 Pseudoxanthomonas sp. GW2 contig000022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1690 29 100.0 32 ............................. AGGTTGGAGACGCTGGTGCGCAATGCCTGTCC 1629 29 100.0 32 ............................. CACCTCATCCGGGCCGATGGCCGTGCCGCTGC 1568 29 100.0 32 ............................. CCTTGCGCATCCACTTCGAGATCTCGCGGCCG 1507 29 100.0 32 ............................. TCGGGGCCGCGCAAATCGTAGTCGCCAGAATG 1446 29 100.0 32 ............................. GCCCGCCTAGGCGCGTTCACGGTCCGCCCCTA 1385 29 100.0 32 ............................. TCCACCATCGGATACGACTTCGCCACCGCCAC 1324 29 100.0 32 ............................. TGCGGCAACGTGGGCTTCTACAGCTACGAGCG 1263 29 100.0 32 ............................. TAGTGGCTGGCGCGGAACACCGCATCGCCGAA 1202 29 100.0 32 ............................. CCGTCGGATGCTCCGGAGTGGGTGCGCGTCGA 1141 29 100.0 31 ............................. ATGACGAGCCCCAGAGGGCACTCGCGCTGCT 1081 29 100.0 32 ............................. TCGGGCGGCCAGCTCGCGGCGGCGGGAGACAT 1020 29 100.0 32 ............................. TTCTACAGCCGCGAGGCCATGCGCAAGCTGTA 959 29 100.0 32 ............................. TTCAACGCCGGTTCCAATGGCACCATCCTGCT 898 29 100.0 32 ............................. CGCAGGTGCATCCCAAGTCGCATGTCTCCGGC 837 29 100.0 32 ............................. ATCGCCGCCGCGCAGGCCGAATACGACCACCT 776 29 100.0 32 ............................. ATTTGCACGGGCTGCCCGATGGCCCGCCACCT 715 29 100.0 32 ............................. CTGTACAGCCTGCCCGATTCTGGCGATGATTC 654 29 100.0 32 ............................. CGCCAGCGGTCATACAGCCCGCGATTGGGCAG 593 29 100.0 32 ............................. AGGACTGGACGCAGATTCGGTTTCCGGTCGAT 532 29 100.0 32 ............................. TACGCGCCGGTCGCATCAATTGCCCAGAGCTT 471 29 100.0 32 ............................. GCGCGCTCGACTACCTGCACCGCGACGTATTG 410 29 100.0 32 ............................. TGCGCCCATTGGCTGCCCGGCTGCCGCTAGGG 349 29 100.0 32 ............................. GCCTTCCCTGATCGCTACCCGTATCAGCGCAT 288 29 100.0 32 ............................. ACAAGTCCCCAGCACCAACCTCCGGCGAGACA 227 29 96.6 32 ............................A GCTGCGCCGCCCAAGCCGTCGCCTGGGCGCCA 166 29 100.0 32 ............................. GTCCGGCAGGTTCGCGGGCGAGCAGTTCGAGC 105 29 100.0 32 ............................. TCGGTTGCGGTCTGGTCGCTGGAGATGACCCA 44 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.9 32 GTGTTCCCCGCGCACGCGGGGATGACCCG # Left flank : GCGCATCATTCCGACCATCGAGGAGGTGTTGGCGGCGGGGGGTATCCAGCCACCTGAAGCCCCGGTGGAGTCGGTGCCACCGGCCATCCCCAATCCGGAGGGAATCGGGGATATCGGCCATCGGGTGCAGGGATGAGCTTCCTGGTCGTCGTCACGGAAAACGTCCCGCCCCGCCTGCGTGGCAGGTTGGCCTTGTGGCTCCTGGAGGTGCGGGCGGGCGTATACATCGGCGATGTGTCGCGTCGCACCCGGGAGATGATCTGGCAACAGTTGTCCGAGGGCTGCGAGGCCGGGAACGTCGTCATGGCTTGGGCCAGCCGCCACGAATCGGGCTACGAGTTCCAGACACTTGGCCCGAACCGGCGTGTTCCCGTGGAGTTCGACGGCCTGCGACTGGTGGCTTTCCATCCGCCGCCGGAACACGCCGCTCTTTGACAATTCAGTTTGGTAGGATTGCGGCCGCCGAATTTTCTTCGGTGCATCAGTTATTTGCGTGAAGT # Right flank : GCGCTGGGCCGGGCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCACGCGGGGATGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16-2670 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALIP01000026.1 Pseudoxanthomonas sp. GW2 contig000026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16 29 100.0 32 ............................. GAAATCGAACAGCAGCACCAGGGAGGCCGCGC 77 29 100.0 32 ............................. GCGGCCCATGCGCGGATCACCTGCAATGCGAT 138 29 100.0 32 ............................. CTGGTCGCGCCACTGCTCGATCACGTCCAGCT 199 29 100.0 32 ............................. CCATCGAGCGCGCCGCATTCGAGGCCGCCGTC 260 29 100.0 32 ............................. CGCGGCCATAGCGAGATAGTCCCGGCCAACGC 321 29 100.0 32 ............................. TCGTATAGGACCTGCACCTGTGCCCGGCTAAG 382 29 100.0 33 ............................. AACACCTGCATCGGGCGCTGACCGGTAGCCAGT 444 29 100.0 32 ............................. AGGGCGAGACCAGCTGCATCGACTACCTCAGC 505 29 100.0 32 ............................. ACCCGGCAGGAAGTCCTGAAGTGGCTGGATGA 566 29 100.0 32 ............................. TCCGGAGCGATGGAAATTGCGTAGTCAGACAT 627 29 100.0 32 ............................. GCCGAGAACACGGCGCTGTCGGACGTGTAGCC 688 29 100.0 32 ............................. TATTGGGGGCCGCTGGCAAAGAACGGCGTGCA 749 29 100.0 32 ............................. CAGCTCCCCGTTTTCGACCTCCCTCTGGCCGC 810 29 100.0 32 ............................. CGGCCGGGGCACCACTGGCGCGCGGTGCCCGC 871 29 100.0 32 ............................. GGCGCGCGAGGCGTTGGGCATCGTTGCTGTCA 932 29 100.0 32 ............................. GAGCACGCCAAGGACCACGAGGGCAACAAGCG 993 29 100.0 32 ............................. CGATCGAAGTGGCCCCGGATTCGCTTAACCAA 1054 29 100.0 32 ............................. ATCGGCCCCGCAGTAATCGCATTCGGGTTCCA 1115 29 100.0 32 ............................. AAGTCGACCCGCCCCGATGGCTGACCTCGGCA 1176 29 100.0 32 ............................. GCGAGGTTCCGGCAGGCCCGGGAGGAGGGCGC 1237 29 100.0 32 ............................. TTGAAGGTGCGGGAGCCGTCAGCCATTGGAGT 1298 29 100.0 32 ............................. GACCACGCGCGCGAGCTGATCGCCGACGTGGA 1359 29 100.0 32 ............................. ATGCCCCACGTAGTACGCGAGGAACAACCAGC 1420 29 96.6 32 ............................T GCTGCCCCCTCTTGCGAAGGGGCAGCGACTGA 1481 29 100.0 32 ............................. CGCCCGGCGGATGTTCGCGTAGCGGTCAGCCA 1542 29 100.0 32 ............................. GTTTCATCAACGGACTACACGTTGACGCTGGA 1603 29 100.0 32 ............................. CCGGACAGCCTGCGCGTGACCTACCAGTGCGG 1664 29 100.0 32 ............................. TCGGTGCGGGTGCCCATTGGGAGCCTGGAAGC 1725 29 100.0 32 ............................. CAGGCAGAGCCGCCCTGGCCGCCCAGCCTGCC 1786 29 100.0 32 ............................. GACATGTTCGGCAGCCAGCGCAGCGTCGCGGA 1847 29 96.6 32 ............................C TGAGGATGCCAAGCAGCATCTCTGCGAACCGC 1908 29 100.0 33 ............................. CTCTACATGCGCGAGTTCGGCAGCGCCCTGCCG 1970 29 100.0 32 ............................. ATCGGCGCCGAGTTCCGGCAGATGCCGCTGAC 2031 29 100.0 32 ............................. CACAACGACGGCCTGGACGTGCTGTTCATCGA 2092 29 100.0 32 ............................. TCGGCCGAGGTGCACACGATCAAGGCCCGCAT 2153 29 100.0 32 ............................. CAGCCGGACGACCTTCGGAACCTGGCCGCCGC 2214 29 100.0 32 ............................. CTGGCGGTAGTCGCAAAGGGAAACCCGTACAA 2275 29 100.0 32 ............................. GACAAGGACCTAATCGGCATCCCGTGGCGCGT 2336 29 100.0 33 ............................. CCCGCCGCGGTTCTCGGTCTGGAGCCGGGTAGC 2398 29 100.0 32 ............................. CACCCTTCCCTGAATTGGCGCGTAACTCTGAA 2459 29 100.0 32 ............................. GCGCTGCTTGGCCAGTTGGAATTGGAGTTCTA 2520 29 100.0 32 ............................. GGGTTCTGTCGGGCCAGCAAGGGGGACGATGA 2581 29 100.0 32 ............................. AACGGTTCCTGCGCCTGTAGCACATGGCGCAC 2642 29 96.6 0 ...........C................. | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.8 32 GTGTTCCCCGCGCACGCGGGGATGACCCG # Left flank : GCCCTGCCGGTGGCGG # Right flank : GGCAGCTAATAACGTTGCTGCGATGACCCGCGCCGCTCTGATGTTGTGCTGTGCGTTGAGTACGTTCCCCGAAAACAAGGGGATAATGACCGCCCGCAATCCGGGGGGGAAGGATGCCTCTTGAGGCCTCGCTTGCGCACCGGATGACTTGCCAGCTCCCGCGGCGATGGTTCCCCCACGCATGGCTCCCCAGGGCTTCTACTTGCCCCTTGAGCCGTCGAAAGCCACGGGTCGGTTGATGTCGGCTCGCGCCAGTACACATACAATTGCGCGATGAATACCCCCTACCCCACCGTGCGGCTGAAGAACGCGTGGCGTTCCAGCCATCCCTGGATCTTCCAGAAGCTTGTCGAGAAGCCGGCCCAGCGGCCGCGCCCGGGCGAGATCGTCGACGCCTACGACGTGGACGGCCAGTTCATCGGCCGCGGCTTCTACAACGGCCACTCGCGCATCGCCCTGCGCATCCTGGAGACCGACCCGGCGGTGGCGGTGGACGCGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCACGCGGGGATGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //