Array 1 1021634-1017343 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023972.1 Pasteurella multocida strain FDAARGOS_385 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1021633 28 100.0 32 ............................ TTGGGCAAGAATGAAAAGGCGTTATATTTTGA 1021573 28 100.0 32 ............................ TCATAATTTATGCAACAAAACGCAAGTTGCTT 1021513 28 100.0 32 ............................ TTTCATGATTGTGATCTTAATCATACTTTTTG 1021453 28 100.0 33 ............................ ATTTATAAGACCTTCCATAGCCCTACCCTCATT 1021392 28 100.0 32 ............................ ACAAGTTCATCACTTTGACCTTCTAAATAATC 1021332 28 100.0 32 ............................ AGACTGGATTGATACAGCAACAAACGATTTCG 1021272 28 100.0 32 ............................ TAGGCAATGCGCTTGTTGTAGAGGATGTCGCA 1021212 28 100.0 32 ............................ ATTTTTTACAAGCTCACCAGAAATGCGCCAAT 1021152 28 100.0 32 ............................ ATTCTCTTCTAAAATATCTAAATGATATTCCG 1021092 28 100.0 32 ............................ TCTTGTTTTTTCAATCTGATCGTTTTGTCAGT 1021032 28 100.0 32 ............................ TTTTATTGAGGTGAAAAGAGGGGTATAGGATT 1020972 28 100.0 32 ............................ TTTTTGCTCTAATAGCATTTCTCCATGTGTTG 1020912 28 100.0 32 ............................ ACTATTTGAAGAACCATTAGAATTACCAGAAC 1020852 28 100.0 32 ............................ AATGTTATTAATGATTTCTTTAAATTTTATAA 1020792 28 100.0 32 ............................ AACGGAAAAAACTTGTGGTTGTTGTGGCTGTT 1020732 28 100.0 32 ............................ ATGAGAAAAAACGTAGAGAAAGAGCTAAAACT 1020672 28 100.0 32 ............................ GGTAAAGAAAATGCTAAGCCATTTCCGGTGTT 1020612 28 100.0 32 ............................ TTACTTATGCACACATCAAGCTGCGTATAGCA 1020552 28 100.0 32 ............................ AGTTGCATTTCAAAAAATAAACGAACAACCTT 1020492 28 100.0 32 ............................ TAAACGCTTTGTATTGCCAGCAAAATCTAGCA 1020432 28 100.0 32 ............................ ATCATGATGGATGTTAACGGTGAGAGAAGTGC 1020372 28 100.0 32 ............................ GTTAAAGGCAATCATAATACGATCTAATGCCA 1020312 28 100.0 32 ............................ GTGCTAGACATTGGCACAGTCGTGATTCTGCC 1020252 28 100.0 33 ............................ CATACAAGCCATGTCATCAAGACGTTGTCTTGT 1020191 28 100.0 32 ............................ GAGTAAGCAACAGCAAATTATTAAAAAAGATT 1020131 28 100.0 32 ............................ TTTTTGGATAGACAAATTAATGTTGCGCAGAT 1020071 28 100.0 32 ............................ ATTCTTCCAAACCGCGCAAACGGCACATCATT 1020011 28 100.0 32 ............................ TTCATCGTTTCACGCAACCCACAGTAGCGGAG 1019951 28 100.0 32 ............................ ATTTTGTCACTTTTCCAGTTATTGCCGTTACT 1019891 28 100.0 32 ............................ AAATTGCATTACGAAAATTAAGGTAGTCTTGA 1019831 28 100.0 32 ............................ AATTCAAAATAATCACGTTCTGAATTGTCGCC 1019771 28 100.0 32 ............................ AGAGCATTTACGCAACATGGCCCTTTTCAAAG 1019711 28 100.0 32 ............................ GCCGAATTGTTTCGCATAAGCGCGAAAACCTT 1019651 28 100.0 32 ............................ TTTTTGTTTTAGAACAAACCTCACAAAACACT 1019591 28 100.0 32 ............................ GTTTTCTTCTAAGATTTCTAAATTATATTCTG 1019531 28 100.0 32 ............................ TGTATGCAAAAGTCTTGAATTAAAATCTTGTT 1019471 28 100.0 32 ............................ GTTTATCAAAACAGTTAGTTGAAACAGACGAT 1019411 28 100.0 32 ............................ TTTAATCCCACTTACACCACTATGACCATTAT 1019351 28 100.0 32 ............................ TAACTTTTTAAGATGTTTGTTATCAATTAGAT 1019291 28 100.0 32 ............................ ATCTAGTCGTGATGCGTTTCTAAATTCAGAAA 1019231 28 100.0 32 ............................ ATTTTATTTCCGCCTTCATCTTCATCATCCAT 1019171 28 100.0 32 ............................ AAACAGCAAGAAATCAAATGCTGATAACAGCT 1019111 28 100.0 32 ............................ ATTGTTTGACTTACTTTATCAACTGTTCCTGA 1019051 28 100.0 32 ............................ ACAATTCCTGAAACAGTATCTGCGTTGAACAT 1018991 28 100.0 32 ............................ ATAGTCTTTTAATGCCCTTGAAGAACGAACAT 1018931 28 100.0 32 ............................ ACTAGCACGCATGGCTTATGAATTTGAAACAG 1018871 28 100.0 32 ............................ AGAGTGGCTCTGCGAATTCATGCCAAGCACAA 1018811 28 100.0 32 ............................ GTTGATTGAGCCGCCGAATTTTTTAATTAATT 1018751 28 100.0 32 ............................ TTTCTGGGGGCTTTGTCTTTGTTAAAGGGGAA 1018691 28 100.0 32 ............................ AACCTTGTTTTTTAGATTGATAAATAATTCCT 1018631 28 100.0 32 ............................ TTAATTTAATTGTTTAAATATTTGTTCGCTTT 1018571 28 100.0 32 ............................ ACCTCGTCTTGTTCTAGCCATTTCTCGACTTC 1018511 28 100.0 32 ............................ ATGTAATCTGCTAGTTGTTGTCTCATTTTTTT 1018451 28 100.0 32 ............................ TTTTTAGTTTTTTAAATTTAAGGGTTTCCCCT 1018391 28 100.0 32 ............................ AACATATAAGCCAATCAAATTAACATCTGATG 1018331 28 100.0 32 ............................ ATCCATTGCTGTGTGTGTGCCGAGTTTCATAA 1018271 28 100.0 32 ............................ ACAAAGCCCAAGAAAAAAGGCTATTGTGACTA 1018211 28 100.0 32 ............................ TGGTTCTTTTGTTTTCGCCTCACGGTGCTAAT 1018151 28 100.0 32 ............................ CAAGCGTGGCAACATCCCCGTAATGTCACCAT 1018091 28 100.0 32 ............................ TGGTGTGCGACTTCTTGCCGCATTAACCAAAA 1018031 28 100.0 32 ............................ AGATTTCACCACCGATTAAATGCGCCGAATAT 1017971 28 100.0 32 ............................ GTGTAGTAAGTTACAAATTCCCCATTTATAAG 1017911 28 100.0 33 ............................ ACAATCATCACACCGTCCATCGCACTAATTGTA 1017850 28 100.0 32 ............................ TGTATAAGTTCGACGGAAAAATCCACCTAGCG 1017790 28 100.0 32 ............................ AAAAACGATTGATTAAGCGTTTAACTTTGCTT 1017730 28 100.0 32 ............................ ACTTTTTACCCTCAATGTTGGAGAACTCACAA 1017670 28 100.0 32 ............................ ATAATTGCCATATCAAACACCCCACTAATTAA 1017610 28 100.0 32 ............................ TCACTGGATTGGTCCGGGTAGTGATATTTGTG 1017550 28 100.0 32 ............................ TTTTTCTAATGCCTCAATGAGTTTTTCGGCTT 1017490 28 100.0 32 ............................ TAATGCGGAGGTAAAGTATGCCTCAAATTAAA 1017430 28 96.4 32 .......A.................... TGATCAATAAAGACTTGCAACAAATCAGGATT 1017370 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 72 28 99.9 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : ATTTAGCTTATCAGGTAAAAGCAACCGGCTCAGTTCACTGCCATGTAAGCAGTGTCAATTGACTGTTGGTATATTACTAAAACTGGATATGGGGATAAGTCTATTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCCGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCAGATAACGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTAAATGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATATCCGCCATTGTCTGTCCGGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2069305-2070471 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023972.1 Pasteurella multocida strain FDAARGOS_385 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2069305 28 100.0 32 ............................ ACATTGCACGGGCACCGTGAGTTTGCACGTAA 2069365 28 100.0 32 ............................ TTGCTGAAATCTCAAAAAACACAGCCAATGTG 2069425 28 100.0 32 ............................ ATCCGTCTTTTTAGCCCCTGAAAATTTAGATA 2069485 28 100.0 32 ............................ AGAGCTTTCTATGCCTGCTGGTAATTGTCCTA 2069545 28 100.0 32 ............................ AGTGAATCCGAAAGCCAAGCGCGCGCATTGAA 2069605 28 100.0 32 ............................ TTTTTTGGTAGCTTTTACTACCAAGGCTCCTT 2069665 28 100.0 33 ............................ ATGAATTGAGATACTGAAATGGCATCCATTTCT 2069726 28 100.0 32 ............................ AAAGAAAAAAATCTAAATCGGCATATTTAACG 2069786 28 100.0 32 ............................ GCAAACTATATTTAAAAACATATCGAGCAGTT 2069846 28 100.0 32 ............................ TTTTTCATTTTGACGTTCGATATATTTATACA 2069906 28 100.0 32 ............................ TAGTCGCTTAGTATTGCCCGCAAAATCAAGTA 2069966 28 100.0 32 ............................ ACGATAGTTAGCAGGCTTAGGAATTTTACGCC 2070026 28 100.0 32 ............................ AATCATTATTGCGGATTTAATCAATCCTGACC 2070086 28 100.0 32 ............................ TTGTTGGCTTTGAGGTTGTTGTGGTTGCGATT 2070146 28 100.0 32 ............................ ATTTTCAAACCAAAGCATATCAACACTTCTTC 2070206 28 100.0 32 ............................ TCTATTTTTAAAATCTTGAGTGGGCAAAGCCG 2070266 28 100.0 32 ............................ TTTTGTCGCAAACCATTTGCGCACCCGCTTGC 2070326 28 100.0 32 ............................ TACAGGCAAGCCTTTTTTCTCTGCTTCAACTG 2070386 28 100.0 31 ............................ AAAAGGCAGTAAATGACTTAGAGAAAAAAGT 2070445 27 92.9 0 ........-...............A... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACAGCAACAATTATTGCGATCTGGCTTATCAGACTATGCTTTAATTAGCGAAGTGAGTAAAACACCGTCGCCTACCGAGCATCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGTCGTACTGAAAAGCGTCTTAAAAGTCAGGGAAGATGGGATGAGTCCATCCGCGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCCAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAAAAGAATGCCGCAATCTTGTGTTGGTATCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCATTTTTAATCTCATTGTTAACCCTTTTTTCTTACTTGAAAAATTTTCAAATAAGATCAAAGGGTTATTAGTATTCCCTAAAAAAGGGTTTTCTTCTCAGATGTTCTTTAACAAATTGAAATATCCAAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCTGTTAAGCAACTTCAGTTAAAGAACAGAAAAGGCCCATTATGCTTATCAGATAACGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTCTTGTTAGGCAGTGGTACGTCGATTACGCAAGCCGCGATGCGAGAGTTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGTGGAGGTGGTACACCATTGTTTAATGGCACTGAAGCCGAGATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //