Array 1 6016-5739 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMQF01000046.1 Streptomyces fumigatiscleroticus strain JCM 3101 sequence046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 6015 33 87.9 28 .C............................ACT GCCGCAGCCACGACTCCGCTCCCATCCG 5954 33 87.9 28 ......T..........T............A.C CCATCACGCCCGACCACCCGCGGATGCA 5893 33 93.9 28 ....................A.........C.. ACTAGCGCTTCCGGATGCCGGTCGCCAC 5832 33 100.0 28 ................................. CTCCCGCAGAGACTCTCCTGACCACGGC 5771 33 90.9 0 .............................ATC. | ========== ====== ====== ====== ================================= ============================ ================== 5 33 92.1 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCGGA # Left flank : GGCGCGGACGCCGACCAGTGGTGGCACCGCCGCGCCGAGGCCGCAGGCCTGCAGCTCCACATCCTCACCCCCACCACCCTGGCCCCCATACGCCCCCGGGGAAAGGAAGCTCCGCCCATGCGGCACAGCCTGCTGCGCTACGACGGCACCGCCACCGTCACCGACCCCACCGCCCTCACCGAGGCCCTCCGAGCCGGCATCGGCCGCGGCAAGCCCTACGGCGCCGGCCTGCTCAGCCTCGCTCCGGCGGGCGCCGCTTGAGCGCGCCGAGCAGAGGCGGCGACGCCCGCAGACGCCTCGCCGCCCCCACCCTGGCCATGCTGCCCCGCGTCGCCGACTCCCTGTCGTTCCTCTACCTCGACATGGTCCGCGTCGTCCAAGACGACACCGGCGTCTGCGCCCAGATCCAGGCCGGCGAGGGGCGCACCGACCTCGTCTACATCCCCACCGCCGCCCTGTCCTGCCCGCTGCTTGGACCCGGCGTGTCCATCACCACGCCC # Right flank : GGCGGGAAGCCTTCGGCCTTCTGCTGCTGTCCTCCGGCCGACGATCTGGACGACGCCGGTCGTCCAGGAGGAAGTACCCAGCAAGGACGCCGAGGTGACCATCGAGGTCTCCAAGGCGCAGTTCAAGGTCGGTATGCGCGCCCCGGGCGCTCACACCGGGCAGGTGATCAACGCCTCGACCCGCATCCTGGGGCTCGCGGGCTCGGTCGTCGGCCCCCTGATGGTGCTCAGGATCTCGGTGGACGTCCCGATGCCCTGGCAGGGGATCTGGACGCTGGCCCTGGTAACCGGGGGCCTGCCCCTCCTGCACATTCTGTTCGGGAACCGCCACGACCGGCGGTAGCCGAACGCCCCGCATACCTGCTGTGCGACGCAGCGCCGGACTCAGGCAGTCCGGCGCTGCGTCGCGTTCCTGGCCCTTTCAGCTCGGCCGGACAAGGCAGGTGAGCATGTGATGGGTGGCGGGGTCGGTGGTGTAGATACGGGTGTGGTGGGTGCCG # Questionable array : NO Score: 3.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 14397-20085 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMQF01000046.1 Streptomyces fumigatiscleroticus strain JCM 3101 sequence046, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 14397 33 84.8 28 ...T...T..........A...........AC. CCGAGGAATGGGGCCTGCTGCACTGCGC 14458 33 78.8 27 AC......................A....GACC CTGAGTTGGTCGCCGTCGACTACTGAG A [14469] 14519 33 75.8 28 ...T....T........A......AG...CA.C GGATGGGACCGTGCGACCCGACCGCGCT G [14521] 14581 33 84.8 25 A..T...........C.C......A........ GCCCTCGGGGCCAGGGGTGGTGGTC GACA [14610] 14643 33 93.9 29 ....................A...........A TCGTGAGCTGCATGCGCTTGAGGACCGGG 14705 33 84.8 28 ........................C....CAAC CAGCGAGACCGGCCCGGTTGTCTCATTC 14766 33 97.0 26 ...............................A. GCGACCCGGAACCACCCGGTCGAGTG GT [14795] 14827 33 90.9 27 .C..................A.........T.. TCGCCGTTCCGCGGTCCAACCGTCCAG 14887 33 87.9 28 ...................A.........GGT. CGGCCTTGGTCACTGGGACTGCCCAGCC 14948 33 78.8 28 .................C......AGT..CT.A GGCGGGGCGCGGTGGACGTGCTCGCGGC 15009 33 90.9 28 .........................G...G.A. GGACCAGGTACGGCTGTTCCGCCATGCT 15070 33 90.9 28 .............................AA.A CCCGAGCCACGACGAACGCCGGGTACGC 15131 33 90.9 28 .............................CT.T GGGAGGGGGAGTCGAACTGGCGCTGGAA 15192 33 84.8 28 .......T.....................GTCC TGCCGTGGGCGCAGGACCACGCCGACCA 15253 33 84.8 28 ........................AGT..G.T. ACTATCCGTGGCTCGCACGCGTGCGCGT 15314 33 84.8 28 ......................C......GGAC CGCGACCAAGACCGTGACGGTGACGGAG 15375 33 90.9 28 ......................C......C..T GCCGGTCCACCACCTTTTGTATCTCCAC 15436 33 81.8 28 ........................AGT..CA.A CCTGCGCCCAGACGATGGTGCGGGCGGT 15497 33 87.9 28 ...................A........TCA.. GCACACCCGGCGCGGAGACGCCGACGCT 15558 32 75.8 28 ................-......AAGT..CT.T ACGGTGTCACGCTGGTCCAGGACACCCG 15618 33 84.8 28 ........................AGT..G..A ATGCCAAGGCCAAGCGCGAGATGAGCGG 15679 33 78.8 28 ..............T.........ACT..G.AT GCCCGCCGGCATCGACCTGACGGCGGCC 15740 33 93.9 28 ..............................G.A CCTGGTAGCCGTTCATCATGAGCGCCTT 15801 33 87.9 28 .............................AAAC GATCCAGCGCTGCGAGGCGTGATGCGGC 15862 33 87.9 28 ..........T..................AAC. CGTCCTTCGATGCCGGGAGGACGTGCAG 15923 33 93.9 28 .............................GA.. TCATCGGGGACGCGATCCGTAATGCGGG 15984 33 87.9 28 .............................CGAC CCCGGACGCCAAGAGCGTGAAGGTGGAC 16045 33 93.9 28 ..............................T.T AGATGGTGGTGAGTTGGTGGGTTCCGGA 16106 33 97.0 28 .............................C... GATGTGGCGGCGTATTTGCAGGTGTCGC 16167 33 97.0 28 .............................A... TCAACGCCCACCTTGCCTCTCTCGGCAT 16228 33 87.9 28 .G...........................G.CA CGAACAGCGCCCGGCAGGAGCAGATCGA 16289 32 90.9 28 .................-...........CA.. ACCCGGCCCGCGCGGTCGACTGCCCGCA 16349 33 87.9 28 .................C............TCA CGGGCTTTTTCGTGATCCCTTGGATCTT 16410 33 90.9 28 .............................G.AT CGATGGCACCGACCGTGTTCGGCGTCTT 16471 33 87.9 28 .....T.......................CT.T GCCGCCAGCCGGATGTCACCGCGATCGA 16532 33 87.9 28 ..........................T..AT.C CGCCGTCGGCGAACGCCGGAAGGCCGCC 16593 33 93.9 28 ..............................AC. AGTCCGTCTTCGGGTGCAGGATCACGCT 16654 33 90.9 28 ........................C.....GC. GGCGCCATGGCCCTGTGGGCAGGGATCG 16715 33 93.9 28 ............................A...A GCGCGGACGGGCTCAGGCAGAGCATCGT 16776 32 93.9 28 .........-.....................C. CGCCGCTCGCCGAGACGAGACGGGTGTG 16836 33 90.9 28 .......T................A..G..... GTCCACCGTCCCCGATCGCCTCCACGTC G [16861] 16898 33 93.9 28 ..............................A.C CGCGCACGATGTCGTACTGGTTCATCAG CG [16912] 16961 33 84.8 28 .......................T.....ATCC TGCGCTGGCGGCCGGCCCTGTCGCACGC 17022 33 84.8 28 ..............T.........A....GT.C TCATCCCGCTGCGCACCAACCTGAACCG 17083 33 81.8 26 ..T.........A.....A.....C....CT.. TGGATACGATCCACGTTAGGACCTGT GG [17112] 17144 33 75.8 28 .C...T..................AGT..A.CC GCGAGCTGGCCCGGGCGCAGGAGGAGTA 17205 33 81.8 28 ..............T.........C.T..GG.A AACGGGCGCCGTACTCGTTGACGAAGTA 17266 33 90.9 28 ...........................T.C..T CCTCGATCAGCCATGCGGCGATATCGGC 17327 33 93.9 28 ..............T..............G... ACCTCGACGCGCTCTTGGAGCGCAAGCC 17388 33 100.0 25 ................................. AGTCCTCCTCGAATCCCTGGACGAG CTC [17417] 17449 33 87.9 28 ........................AGT.....A CACGGACGGCTCCGTGCTCGCGTCCGCG 17510 33 84.8 28 ........T.......T...A.........TC. CCGCGCGAGCCATCGATTCCCTGACAGG 17571 33 93.9 28 ..T..........................C... TCATCCCCATGACGAGGATGTGGATCGC 17632 33 84.8 28 ........T.............G.C.....T.T CCCGGGTCTTGGTGTGCGTGGCCTGCTC 17693 33 87.9 27 ........................A..G.C.C. TGCGCAGGAACTGGCCCGGGACATCGG G [17718] 17754 33 72.7 28 ..........A...T.........AGT..GACA TCGCCGAGCGGTGGCGCAAGGCAGCCCG 17815 33 81.8 28 ......T.................AGT..C..A TCTGCCCGCTGGCGCTTGCCGCGCGTCG 17876 33 81.8 28 ...........A....T............ATCA CGTCAGCGTCGTCCGTGCCGAGCTCGGC 17937 33 87.9 28 ............A................GT.C CCGGCGTCCTGGAGGGCATGGTCCTCCG 17998 33 90.9 28 ...............A.............A..C ACAAGGCCACGGCCGCCGCCCTGGTGGC 18059 33 90.9 28 ...T...........................CT CCTAGCGGATGCCGGCGACCGTGCCGGA 18120 33 90.9 28 .............................A.CC CCGAGCGACCCCTGGCGGAGGCCGATCT C [18130] 18182 33 78.8 23 A.......G..T...........CCG.T..... TCTGTGCACGCGGGTGTCTGGCG TC [18212] 18240 33 81.8 28 .........A.T.G...............GAC. CGCAGGCGGAGGCGGCCCGCACGCAGTT 18301 33 84.8 28 ..............G..............GTCA CCGTCGTCGAGGCCAAGCGGTTCACCGA 18362 32 90.9 28 ..............T.-..............C. AGACGTTCCGCAACATCGTGATGGGCGT 18422 33 87.9 28 .C...T.......................GT.. GTGGACGTACCCTCATGGCTACCAACGC 18483 33 90.9 25 ..................A..........A.A. CGTGAGGGCCGGGGCTTCATTCTCT 18541 33 78.8 28 .CAG...............T.........A.CC ACACGGGCCGGTTGTGCTCGCGCCGCAG 18602 33 87.9 28 .......................C.....GTC. CGGACCGGGCCAGTGGGGATGTGGCCGA 18663 33 75.8 33 ...T...T.............TG..C..CA.A. CCAGCCCGGCGCTCTCATCGTTTTCGGGTCCTC 18729 33 81.8 28 ................T...A..A.G...CT.. AGCGGCTGATCAACGAAACGAGGGTGGC 18790 33 93.9 28 .....T.......................G... GCATGCTGCGCGCGCTCGACGTCGGCCG 18851 33 93.9 26 ........................C....C... CACCCCCGGCCTCGCCTGTAGGCCAG AC [18881] 18912 33 93.9 17 ...............................TC CCTGCAGCAGCGCCGTC Deletion [18962] 18962 33 72.7 23 AAA...TG.......A.........G.TA.... CGCGAGATTCACCACCACCTCGA AGTCG [18986] 19023 33 87.9 28 .......T............A........C..T ACTTGGCGGCGAGACGATCGAGGCTGGC 19084 33 93.9 28 .............................CA.. CCATCGTCATGGGCACCACCGTGAACGG 19145 33 100.0 28 ................................. CGCCGTGCGAGGTGACCAGGTGCGGCTC 19206 32 87.9 27 ........T............-..A......A. GGTGGCGTCGGCGGCTTGGTAGAGGAG G [19236] 19266 33 90.9 28 ..T.........C...........A........ ACAGGCCCGCGCCGAAGATGTGTCGCAT 19327 33 87.9 28 .............................CGCT TCGTCTTGCCGTTCCGGACCGCCGTGCG 19388 33 81.8 28 ........................AGT..CTC. TCCAGCGCGGCCAGCTCACGCACGCCGG 19449 33 78.8 28 ...............A........AGT..A.TC CCTCCCCATGCTGCTCGGGCGGATCGAG 19510 33 84.8 28 ..............T.....A...AGT...... GCATGAACGTCTGCACGAGCTGTTGCCC 19571 33 87.9 28 ...TC........................A..C CCTTCCCCTGGACGCCCTGCACGAGCCC 19632 33 81.8 28 ........................AGT...ACC CCGAGCTGAATCCGGAGGACGGCACGGT C [19637] 19694 33 84.8 28 ..............T.T............G.CT CCGGGGCGGACGGCCCGGGAGTGATGGG 19755 33 72.7 21 ...........AT......A....C..T.GAAC AGCGGCAGGGGAACGCCGACC Deletion [19809] 19809 33 75.8 28 TGA..TT.......G...............G.T GCGAGGAGAACGCCAGCGAGGTCAGTTC T [19820] 19871 33 81.8 28 .......T.A....T..............GT.T ACGCCAGGATGCTGGAGCGTGTGCGCGC 19932 33 84.8 28 .........A.........A.....G...CA.. GCACACCCGGCGCGGAGACGCCGACGCT 19993 33 87.9 28 .............................AGTC CTCCTCATCCCGTACCGAGGTGAGCGCG 20054 32 81.8 0 ............A...T.........GT-..A. | ========== ====== ====== ====== ================================= ================================= ================== 94 33 86.9 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGTCGG # Left flank : ATCCGCCCCATGTCACCGAGCAGCTCACCGCTCAGCCCAGCGCGCCCGCGAGCACTGCACAGCTGGAACCCCGACACCTTGCCGACATCGTGCAACCCCGCACACAACGCGGCCAGCCCCCGCGCCCGCTCCAGATCCTGCCCACAGCCCAGCCCGGCAGCAATCACACGCCGCTGATTCTCCGAGAGATACCGGTCCCACAAGAAAAGAGCCATGGCCGCCGCATCCAGCAGATGCCGTATCAACGCATACGGCGCACGCGCAGGATCCAGCCCACGCGACTTCCCCCACACCGACTCATCCGGCCCTCCACCGACCATCCCCGACACGACCGACCCCTCCCCATACCACCGCGACCACTACGGCCCCGCGCTCCACCGATGCAAGCACACGGCACCGACAACACCCCGGGTCGTGATACCGGCTATAGTGACCGCGTGCACCACCCCGCACGACACACCAAGACAGGTATCCCGGTGAGGGAACGCCTGGTCAGGAGT # Right flank : GCCGACACCAACGCAGGCGCCGACCGCTGGGGAGACTATGGACGTCGGCAGGCCCGGCCGACCCGATGCGAGGAGGGGCCATGGGATGGGTGGACCCGAAGTGGATTCCGGTGCTGCGGGCGGACGGCCGGTACACGCGGCTGCTCAACCTGACCCAGCGGCTGCTGGCGGAACGGGAGCGCCTGATGCCCACATGCACGAACTGCCAGGGCGGCCAGGTCACCGTCCGCGACCCGGACGGCCGCGAGTACACCGTCGACTGCTCGGCCTGCGACGGCACCGGCGTACTGCCCGAGCGCGCCGACAACGAAGACGACGGCCGAGCCGGCGGCCGCTGACACCCCGCGCCGCACGACAGGCGCGAGTGTCGTTCGCCCTGTCGTTCCCGGCGTCGTCTCCGCCGTCGTTCCCGGGGCCGTGCTTGGACACGACACCCCCGGCCCGGACGAAGGGGCAGGCCAGAACAGGGGCGAGCCACCGCCGGGCGCGGGTGACTGTAT # Questionable array : NO Score: 4.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.35, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.03, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGTCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [51-93] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //