Array 1 104155-104977 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHLE01000005.1 Pseudomonas aeruginosa strain 11987-2-5 NODE_5_length_242666_cov_28.5234, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 104155 29 100.0 32 ............................. TGTGGCTCGCCGCGTTGAGCAACAACAGCGCA 104216 29 100.0 32 ............................. GCGGTAATCGGGGTCGTACTTCAGGCCCTCCC 104277 29 100.0 32 ............................. GTAGCCGACCAGATCCTGCCGCAGTACTGGCA 104338 29 100.0 32 ............................. TACGGGAATGATGTCTGGTGCCACCTGCCAGA 104399 29 100.0 32 ............................. CAGTTCTCTGTCGTTCATTGCTTGGCTCCTTC 104460 29 100.0 32 ............................. CATGGCAAGGGCCGCTGATTTCCGATGAGGAA 104521 29 100.0 32 ............................. CCCTTCGCTGACCGTCATACCGTTGAGGCGCG 104582 29 100.0 32 ............................. GATTATGCCGTGGCTCGGGGCGTGGAAGCCGG 104643 29 100.0 33 ............................. ACAAGTTGCCGCTGTCGAAGGTGACGACGACCG 104705 29 100.0 32 ............................. GCCGTGTCGTTCGATGGTGATGTCGTGCTGCT 104766 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 104827 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 104888 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 104949 28 79.3 0 A..........A..C..-.....A....T | C [104953] ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.8 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCATGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 114152-115830 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHLE01000005.1 Pseudomonas aeruginosa strain 11987-2-5 NODE_5_length_242666_cov_28.5234, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 114152 29 100.0 32 ............................. GTTATAAGGATCGCCAAGGGGTTAGTTCACGG 114213 29 100.0 32 ............................. CCCGGCTGGCCGCGACACGCGCTCGCGATGCC 114274 29 100.0 32 ............................. CGCTCGGCAATGCCGAGGTGTGGGAGGCAGTG 114335 29 100.0 33 ............................. CGGCTGGTGGCGGGACAACGACACGGGGTACAT 114397 29 100.0 32 ............................. GCTACCAGTACAGCCGTGGGATGTGGGTCGAC 114458 29 100.0 32 ............................. CCCTCATTAGCCACGCCGTCAGTAGTTGGCTG 114519 29 100.0 32 ............................. CGGGCAACGGTCCATACCAGTCTCATTCCCCA 114580 29 100.0 32 ............................. GGGTATGGAGCATGAGCGAAATCTGGAAATGC 114641 29 100.0 32 ............................. TTCATGGACGACCCAGGCGAAGGCCAGTACAT 114702 29 100.0 33 ............................. CCGGCCGCCGGCCGAGGTCCCTGTCCGACAAGC 114764 29 100.0 32 ............................. TCACCGATGGCCTCGGCGCCGAGGGTATCGAT 114825 29 100.0 32 ............................. GCACCCGCCGGGCGGGCACACAGGGAAGGAGG 114886 29 100.0 32 ............................. ACCTAGTGATCCTCGATTGCGGTCGATGGGAG 114947 29 100.0 32 ............................. GTTGCAGCATCGCCGGCGTGGCGGGCCTGAGC 115008 29 100.0 32 ............................. GTCAACCTCGTTCCGTACCGCGTCACGCTGAC 115069 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 115130 29 96.6 32 ...........A................. ATGTGCTTCCAGCTTTCGTCGTCCAGCTTCCG 115191 29 96.6 32 ...........A................. ATAAAAGAGGCCGTCAAATACCGATGCGTCCT 115252 29 96.6 33 ...........A................. TGAAAGTCAGCGACCATGCCGGCCGGCCAATCC 115314 29 96.6 32 ...........A................. CCCTTCATGCCGGTGCCCTTCTGCCCGCAGGG 115375 29 96.6 32 ...........A................. GTGGTGCCGTGTGAGCCGGGCTTGGGGTCATG 115436 29 96.6 32 ...........A................. GTGATCCGCTGATAGTCGCCGTGCCCCAGGCC 115497 29 96.6 32 ...........A................. CTGCTGCGCGTAGGTTGGTGGCTCGCTATGTT 115558 29 93.1 32 ...........A.........T....... GGCCTATTCCGGCCAGTCATCTCAGCTTGAAC 115619 29 96.6 32 ...........A................. GTCACCGGGCAGAGCAACACTGCTGTTGGCAA 115680 29 96.6 32 ...........A................. TCGCCGGTGCGGCCGTGGGGCTACGAGCGGCC 115741 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 115802 29 89.7 0 ........T..AC................ | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.2 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGACCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTTTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.93, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //