Array 1 39599-39413 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVMC01000049.1 Cylindrospermopsis raciborskii Cr2010 Contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================ ================== 39598 32 100.0 42 ................................ AATTGGTTGACAACCAAAAAAAGGTGTGTTATGGTAGTGTCC 39524 32 96.9 48 ........T....................... TAGAAACCCCCCAGCCACAAACACATCCGCATTAGACTTAAATAGTCT 39444 32 93.8 0 ........................G...T... | ========== ====== ====== ====== ================================ ================================================ ================== 3 32 96.9 46 TGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Left flank : AAAATTGGAATTAAACATGAACGTAAGTTGGGTGAGGCTTGCCATTGCACGCTTAAAGCCCTTACGTTCTCCCCATATACTTGCCATGATTGCTGGCCATTCAGGGGATAGGGTTCCACATTGTCCAGAGGTACACTCTCAAATCTAATCTCCCTACAGCGCCATCCACATCTTGCCATTCTCCGGTAACTGGATGGATGGCGAAACCAGGATTTTCAGTGGGTAGGTTAGGGTCTGGGTATAGTTGCTGCTGTAGTGGCAGGAATTGGGTGGGTTCTGGTTCGATGAATACCAATTGTTTTAGATCCCCCTTTGGTTATTTGTTTTGTAATGATAGGTTAGGGTTCTGGTTAAATATAATATTAACCTGGTAATAAAAACTTTGTCTTCTGTCTATAGGAATAGTTACATCTATCTTTGGACAGAAAAATCAGTAATTAACGAAGAAAGTGCGAAGGTCAACAAAAAACGGTTGGCACTTCTTCTGCTGTACGTAAGCT # Right flank : GTAATAAGGCTGTTGGAAACAACCTTATTACGTGACATTCATCAGGGTGCAAAGACGCCTGAAATTGTCTACCCAGAAAGTGACGGTCAACCGATGGCGGACAATACTAGACGATTGTCAAAGTCAACCGCCCCACCCACAAGGGGATGGGGTTTTGCGCTCGATCAATAAATTATTACCTGCACGACAGCTTACCCTTGGGGGTCTTAAGCTGGGTTCAATTTTTTACCAGATGATAACTCATTCTTAACCTTTTAATTATTAATCTTTGCTATTGTAGTCAGATATTGTCAAACAATATGTTACGGCTTTAGCCAAAGGGTGATAGGCTCTTAAAATTGCCTTTAAACCATATAGCTAAAGCTTGTAGAGCTTAATAACTGATTATAAAGTCTAACAATTATTAAGATGTCACTATTTAACATTGCAGTAACTAACCTTTACTAATAACCCCTTCTGGCATTTCTGGCAATGAACCCTACTGAAAATATCATCCATCT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 8066-4406 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVMC01000035.1 Cylindrospermopsis raciborskii Cr2010 Contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 8065 36 100.0 36 .................................... ATCTCCCAAAACCCCCATGGGTTTGGGTTTGGTTCC 7993 36 100.0 37 .................................... AGGATCCTCTCCTCGAGAATTCTTTTGCGCTTTTGCA 7920 36 100.0 36 .................................... ATTTGGTCAAAGATGTGAATAAGATTAGTTCTAAGT 7848 36 100.0 41 .................................... TATTTTGAAAATCCAAGAACGAAGCATCAATGGTTTCAGGT 7771 36 100.0 40 .................................... TGTATCCCGTTTCAACTGGTTCTGTTTCCAGACCCACTTG 7695 36 100.0 37 .................................... TGCAACTAATAAAAACATCAGTTTGATTATCTTTTTG 7622 36 100.0 40 .................................... CGTAGGTATATTATATTCTTTACCAACGGAAACTCAGTGG 7546 36 100.0 36 .................................... TTTAAACAATCAGGAGAGACCTCCTGGTTATTTGGG 7474 36 100.0 36 .................................... AGTCATAGACATCCTTGAACCAATAAACAGTTACAG 7402 36 100.0 41 .................................... CCAGAGCAGTGGTGGCCTAGCCACACTGCCAATGAGTGGAA 7325 36 100.0 37 .................................... ATTTACTCTGTGAGTTCCATAAGCAATTGCATCATCT 7252 36 100.0 35 .................................... GAATTTTGAAATCAAGATAAAAGTAGACGGGCTAG 7181 36 100.0 39 .................................... TCCCCTGGTAGTTCCCCTCTAGCGGTTCCCCTCTAGCAG 7106 36 100.0 37 .................................... AGATTTGATAGGGGTGGATTTGGCGATCGCACTAACA 7033 36 100.0 38 .................................... GATATTTATTACGTCGCTGGAAAATTCCAGTAAATTTT 6959 36 100.0 41 .................................... CACTCCCGCTCAGGATCTTTAAGATCCTGAAAGTCCTAAAA 6882 36 100.0 39 .................................... ATAATAAAAATACTAGCTACTCCCTGTAAGCCTGATTAT 6807 36 100.0 37 .................................... GGGAGTGGTGTTTAGATGAATGGTTTAATAATTACAA 6734 36 100.0 43 .................................... GTTTGTTAAGCTTGCTCCTGTTCGGGTGCTTTTGCCACATCGC 6655 36 100.0 34 .................................... TTGGTACTATAGGACAAAAACGAGACTAGGGTGG 6585 36 100.0 35 .................................... ATTTGTTAATAAAGCTACGAATTGGTTAATAGAAA 6514 36 100.0 44 .................................... TTTTATTGGTATTGAACTGGATAAAGATTATGTCGAAATAGCAA 6434 36 100.0 38 .................................... GAGTTGGGCAGTAAATCACTATCTACATATACGTAGCT 6360 36 100.0 38 .................................... CCGAGGTAATCTACCAAGCTAACCAAAGTGTATAAATC 6286 36 100.0 41 .................................... AAGTCATGCAAACAAAACCTCCATGTTTTTAAACGCTTCTT 6209 36 100.0 37 .................................... GTTCGTGGGAGATGCACCAAAGAGACTTTGGATCCAA 6136 36 100.0 37 .................................... GCTCAGGGAGCTGCTGAGCTATAGGAACAAAGAATAT 6063 36 100.0 38 .................................... CGCCGCGGATGCGGACGCTTGTGCGACGATTTCACCGC 5989 36 100.0 36 .................................... CTACTTCTTGGGGTGTCCAGGACTCATATTTATCTT 5917 36 100.0 39 .................................... AAAAAATTTAACCTTCATAACCTAATCTCCTAATCAAAA 5842 36 100.0 38 .................................... TTGTAGTTGGGACGATCCCAACCCGTCTTTTTGTCATA 5768 36 100.0 37 .................................... CTGCCACCCTTCGACTGAAACCCATCCAATTTGGATG 5695 36 100.0 38 .................................... CTCCACCCTTTCGGGAGAGCGCGGGTTAGTTTAGGATA 5621 36 100.0 36 .................................... CACCAGACTGACTTACTTCCGCTTCAAAACTTGTGG 5549 36 100.0 37 .................................... CAACCGAATATCGTACCCGTACGAACTAAGTCCGTAC 5476 36 100.0 35 .................................... CCATTATTTCCCTCAGAATACCATGGTTGAATTTC 5405 36 100.0 36 .................................... ATATTAGTTTCAGTTGCTTAAAAAAAGATATTGACA 5333 36 100.0 37 .................................... TTCTCCAGTTGGTGGCAGGACTGTGCGCGTGGAAAAA 5260 36 100.0 40 .................................... TTTAAAGATCCTGAGTGGCATTGAGAATTTTAGTAAGGTC 5184 36 100.0 37 .................................... CTACCTGATGAAAAAACTGTTATCATTGGTCTATGGG 5111 36 100.0 38 .................................... AGGCATCCTCTGGAAATACCCCCTCATACCGAAAGGTA 5037 36 97.2 39 T................................... ATGCTGTAATAATTTAACTTGCTCATTTAAGTCATAGAC 4962 36 100.0 37 .................................... GCATTGGAATTCTGCTACAGATTGTCTAGTAGCGTAG 4889 36 100.0 41 .................................... TTGTGGATAACTTACCAAAGTTCCGCCATCTAAAAGAATTA 4812 36 100.0 37 .................................... GTGATACGTTTGATATGAAAATATCAGAAAGTCATAT 4739 36 100.0 39 .................................... TTGTCACGGTTAAGCGGTGTTAACCCGGGTGAGTTTCAG 4664 36 100.0 35 .................................... TCATCCGCACGGGGATGGTTGTTTAATACTTCTAG 4593 36 100.0 41 .................................... CTCTAGGGGAACAACTTGTGGTTCTGCTGCAGGAGTTCCAC 4516 36 100.0 39 .................................... ATCTTAAAAATCCTGAGTGGTAATGTAAAATTTAGCAAA 4441 36 97.2 0 ..............................A..... | ========== ====== ====== ====== ==================================== ============================================ ================== 50 36 99.9 38 CCCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Left flank : CTTTATCTAAACATACCATTCCTCAAATAGAAGCTTGGGGAGTGGGAGTACCCATAGTGCAATTACCCAATTCTATTATTATCTGAGTATTCATGCTAGGTAAAGTTTTAATCTATATGATATCTGTTTACTTTAGTCTAAGCAAAAATAAAATATACAATAAATTTTTTGTTTTTGAATACTAGTTATTTGAGCATGAATCAGTTATAATGATATAGCTAGATGGGTTAATTAACGATTAGTATTGAGATTATTTATTGAGTATTAATTAAGGGCTAAAGTGATATTAATGACAGTAAATTCAGTGATTAACGAATGAAATGCGAAGGTCAGGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTGGTAGGGGTGAAAAACAGAGAAAATTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGCTTAAAATGGAGGT # Right flank : GCATTGTCTTTAGGTAATTATTGCCACGAGCAATAAAAAGCATCTTTCTATTTTTATTGATGCTAGGGAATGGGGAGAAATTTAAAATATGAGAGCGATCGCCTACAATAAGCTATAAGATCGCACCTCCTCAACTCCCCAAACAGCGATTATTCATTTTTATTAAACTGGTACGTCTGACTCCTTCTGCGCTAAAATATCCTTAGTTCAAGGAATTGGCTATGAAAATAAAAGCAATTATTTGGGAAGAAGACGGTGTATGGTGTGGTTCTGTACCAGCTTTACCAGGATGTCATACCTGGGGTGAAAGTTACGAACATTTATTAGAAATGTTGAAAGATGCTGTTCAAGGTTGGTTAGAAGTTGCTAGTCAGCAAGAAGAAGTTGAACCACAAAAACAGTTAATTGAGTTATCTTTATGAAATCCGTTTCTGGTAAGTCTCTGTGTAAGAGAACGCTATGGATGGAATCTAAAAAGGATTACAGGTAGTCATCATATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 29619-27228 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVMC01000017.1 Cylindrospermopsis raciborskii Cr2010 Contig_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 29618 36 100.0 35 .................................... GGTGTGCTCAAACTGCAGAACTATAGTACCCAGTA 29547 36 100.0 36 .................................... TTCTAGCTTTCTCCCCTAAACCCTAAATTTTTTCCA 29475 36 100.0 38 .................................... AGAGTTAGGCTGCCGTGATTGGCAACCAAACCCAAACC 29401 36 100.0 43 .................................... TTCCTCGGGAAAGTATAGCTGCGAGGTAAACCCTCACGCAGCT 29322 36 100.0 37 .................................... AAGACCACTTGTGCAGGGCTATATCCCTATATTATAA 29249 36 100.0 35 .................................... GGAGCCCGAAAGGTTCTTCGACAGACCAGTATTCT 29178 36 100.0 37 .................................... TGAGTTTAAGGAGTTGACTACGGGTGCTTCTACACGG 29105 36 100.0 36 .................................... TTTGTACTGTGTAGGTTTTACCGCTACCAGCTTCTC 29033 36 100.0 37 .................................... AAATAGACGCTGAATTAAGTGTTCTGTTTGACGTAGA 28960 36 100.0 39 .................................... CTCGTAGTTAAATGCTACATAAACGAAGTTGAGGAAGTG 28885 36 100.0 38 .................................... TTTTTAAAGCCCCTTTATGGGGTTTTTTCTTTACTTCT 28811 36 100.0 35 .................................... AAAAATGGTTACAGTGGAATTATAGCGACATAGGA 28740 36 100.0 39 .................................... GTAAAGGCAATGGAGACTTGGGCCGGGTATATTTTTTGT 28665 36 100.0 38 .................................... GAAAGAGATGAAGTATTGAATGAAGTTATCGTTAGGTT 28591 36 100.0 37 .................................... ATTTTGATTTTTACCACCATTGAAGGTGGGTATAGAG 28518 36 100.0 36 .................................... GTAAGGTCAAGGTAGCAAGGGTCAAGGGAGGGGTCA 28446 36 100.0 39 .................................... GAGCCTAATGAAGTGGTTTATGAGTTGAATCCTTCTTGC 28371 36 100.0 38 .................................... CTCTACTCCTAACCTACCCCTTGCCCCCTTGCCTTACC 28297 36 100.0 39 .................................... AGATCACGAGTGTACTTATCTGTTACTAATTCTTTTAGA 28222 36 100.0 36 .................................... CTTACTAGAATTTTCACTGCCACTCAGGATCTTTAA 28150 36 100.0 40 .................................... TGTCTAGTTTTTGTCCAGTGGTAGATAGACTTTTCCTTAA 28074 36 100.0 41 .................................... CTCCTGTTCATGAGGAGGAAACTCCTGTTCATGAGGAGGAA 27997 36 100.0 36 .................................... TTAAGGTTTTTAGTATGGAGATAGTTTTCTATTGTC 27925 36 100.0 36 .................................... TTTACTACCTGTAGATATTCCCTATAAATGGGAAGA 27853 36 100.0 36 .................................... ATAAAAACAGTACAGTACATTACTCGTTTTTATAAT 27781 36 100.0 38 .................................... TATACATTCTTAGGAGGATGTATGTCTTGTTTTAATTG 27707 36 100.0 42 .................................... CGGCTAAGCGGTTATCCGACTAGGTTTCAGCTTGTCACGGCT 27629 36 100.0 42 .................................... CCCCTTCCACCCCTCTACCTGAAGTACCTCTACCTGAAGTAG 27551 36 100.0 38 .................................... CTTCTAATTTGTGATGAATAAACCGTATAGCACTACCA 27477 36 100.0 34 .................................... TTCCCCTCTAGCGGTTCCCCTCTAGCAGCTCCCC 27407 36 100.0 37 .................................... TTAAGTTTTTTCACGCGCGTCAGCAATGCCTTAACTG 27334 36 100.0 35 .................................... CAAAGACAGTTATCCTGAGTAACGGAAACGCTTAC 27263 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 33 36 100.0 38 GTCGCAATACCTATTCCTTCTTATGAAGGTCAAGAC # Left flank : CAGCATTAATTTGTTTTGTTCCATAGGTATCCGCCCACCCATCTAAATACAGAGCTGGTAAGTTCCAACTACCTGTTAAATCTCCTGCTAAATTAGGTGTATCCGGAGTTATTGCTGTTAAGATATTCAACAATTTTTCTACGGATTTGGTTTTAGCTACTTTGTCATTCCGAGAAATAATAAAATGTCCACATAATAAATGGGGAACACCATATATATCACCATTGACTGTGACTCCTTGTAAACCTGCAGGATACCAATCTTTGATATTTTCAGGTTTATTCCATGTTTTGACTACATTTGCTTTGACTAAATCACCTAATAATAATGTATCTACTTCAACGAGATCATAACCATCTTGTTTGCTAGGGTTGGTTAACCATTGTTTTAAAGTGTCTATGTCATAAAATCCTTCTTCTTCTGGGTTGAGAGGTTTTAATACTAAGTCAATGTTGGGATTTTGGGTTTCAAACTCACTTTCAATTCTGTATCCCTCAGTT # Right flank : CCCCCCATTTTAACACCTTACCCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTGTTTTTCACCCCCACTACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCAACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCACTTTCTTCGTTAATTACTGATTTTTCTGTCTTTATTTTTATCATTATCCTTTGCTATTACTGAAATATTTATACCGATTTTTCCCCATTTGTGCCACTATTATAACACATTTACAGGAAAATAATTCCCTAAAACTTATGTATATTTTATTTTTTTGAGACCACTTCATTCTCACCCCCTATTAGGTACTACATTGACTGGGATATTTCATTACTCGCATAAAAGTTTTTAGGTTAGATAAAATGTCGTAAAATACCTACCCAAATCCCTATCTTACCCAAATATCTATCTAAAGATAGATGTAACTATTCCCATAGATAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATACCTATTCCTTCTTATGAAGGTCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 23017-21124 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVMC01000012.1 Cylindrospermopsis raciborskii Cr2010 Contig_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 23016 36 100.0 40 .................................... TTTTTGACCTGAGTCAGTATACGACTCAGTCATATGCTGA 22940 36 100.0 37 .................................... ATTTAGTAAATTAGCGTCTTCAGGATTAATGACTTTT 22867 36 100.0 40 .................................... ACTGCCTCCCAATCCCGACATCCCTCAAGAGGGTTGTCAC 22791 36 100.0 37 .................................... AGCTTTAAAAGAACTTAAAGAAGGCCGCTCTGAACCT 22718 36 100.0 48 .................................... CCTCTTCTAATTTAGCAAACCACTCCTGGTTTACTGTTTGTTCATGAA 22634 36 100.0 35 .................................... TAAAGGTAATCAGTTTGAGCGTACCCTGGAAACAA 22563 36 100.0 36 .................................... TGTAAGTTGAATTTAACAGGAGATTAAGGCTATGGA 22491 36 100.0 37 .................................... TCTTTCTCCTTTCTCTTTCTTGCGGGTGCAGAGGAAA 22418 36 100.0 36 .................................... TTCTATTGTCCTTATGTACCTGTAGTTTCCGTAGGG 22346 36 100.0 37 .................................... CAACCGCTTCTACAATTTATGTATCTGTAATATCACT 22273 36 100.0 37 .................................... GACACAAACTTACCGGGCCCCCACCCAAAAGTGGGAA 22200 36 100.0 39 .................................... CAAAAATAAGGGTAAGAGGTAAAGCAAGGGGTAGGGGTG 22125 36 100.0 38 .................................... CGCTTACTAGTTCCCTAACATACTTTGCTGGAACTAAA 22051 36 100.0 37 .................................... GCTAACTGATCCTTTCCATAATAAAGTTTAAAAAATA 21978 36 100.0 34 .................................... AATTTTCAGTATACGAGTAGTTGACAAATTTTTT 21908 36 100.0 36 .................................... TGACGCAAAAACAAATTTCTGATGTGGTTTTTTTAT 21836 36 100.0 37 .................................... GTTTTCACCACCACTTTTATAGTGGTGTAGTAAATAA 21763 36 100.0 36 .................................... TTATTAGATGCAGGACTGAGAGACATTCTATTTGAA 21691 36 100.0 38 .................................... TGTCAAGTCAAGTCAAGTCTAGTCTGGTCTGTGTTAAG 21617 36 100.0 41 .................................... TTGGGGTTATGTTTAGCAAAAAAGAAGAGCTTGTTATTTCG 21540 36 100.0 38 .................................... TAAAGCCCCACCTAAACTGTGTCCACAAATTGTTAAGC 21466 36 100.0 40 .................................... CCAAGGGACGAAAGTTCCGTTTCGTTGAAGTCGAAGTCTT 21390 36 100.0 46 .................................... TGGTGGAGTCCACGTTTGGTTGCTCTCTGATCAACTAAACTTCGAT 21308 36 100.0 38 .................................... TAGTCTTGCACCGTTCCCCATGGAAAAAAAGTAATTGG 21234 36 100.0 39 .................................... GAGGGTACATACCCATCGTATCGCCAACTTATGCCGAAA 21159 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================ ================== 26 36 100.0 38 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Left flank : ATCTGTAGATATGCTTAGGTATTCAATTAAATTATTACTTCACTATTTAAAGTATGAAGTAATACCCGCGTTTAGTTGATTCATCCCGCAAATATGCAACGCCAATTTGGGATATATTACTCCTATCCCTATAA # Right flank : CCCTCCATTTTAAGCCCTTGCCCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTCTTTTTCACCTCCACTACCCTCAAAATAATGGCTGAAACCCTTACCCCACAAGGCTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCAGTTCCTTCGTTAATTACTAGTTTTAGTGTCATTTGTATTACTTTACTTTTTAAATATACTTGGTTAATAAAATTTAAAATAAATCCTGGAATCCCCCTATTATAGAGAATTTATAGAATAATAGTCAATATTGTAGAACCAACAACATAATGTAACATTTAAATTTTCTAATGTCAGTCGTTTATTGGAGATTTTAGAGAACAAATCCAGCCAGGTTCTAGATGAGATGAAAAAACTATCCGAACCACTGTTTTTATTAACACTACTACTGGCGATCGCATGAGATTCAAAATACCCAATAGGCATCAAGTATAAAGTTTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 100-1538 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVMC01000082.1 Cylindrospermopsis raciborskii Cr2010 Contig_51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 100 36 100.0 34 .................................... GAGCAAACTTAACAAACAAGGAGGTTGGTACGAA 170 36 100.0 37 .................................... TTATGAAGAATTAGAGTCTTCTAAAGTCTTATTGCGG 243 36 100.0 38 .................................... TCCATAATTTGTTTAGCATAATCTAGAGCTCCTTGTAT 317 36 100.0 39 .................................... TTAAAGGCTAGATACCCCTAACCAAATGAACAGTTTTTC 392 36 100.0 37 .................................... TAACTGTCCACCTGTTTTTTAGTCTCACTGAATAATT 465 36 100.0 35 .................................... CAGATGGGCATCGATTGGCTGTCATTGAAGTACCA 536 36 100.0 39 .................................... TGCCCAACTTCGGCGTTCTGGGAGCTAATGGTCAGTTCA 611 36 100.0 38 .................................... GTAAGTACGAGATGACAAACTTCTGGTCATCCAAATAT 685 36 100.0 37 .................................... TCAAGAGATATGAGGAGCTGTCAGGGACGACCTACCC 758 36 100.0 38 .................................... AAGAGACTGTAATCCTGGTAATCGCAGCGGTTGTTTCA 832 36 100.0 40 .................................... TTTACGCAGCAAAAGGCTTTGATTTTGCCTCGCTCAAAGA 908 36 100.0 35 .................................... GAGATAAGGTTATGGAGATTGTTACTTTGATGAAT 979 36 100.0 39 .................................... AGGATTTGTGGGAAGATTACCAATCCGACCAAACACCAA 1054 36 100.0 39 .................................... ACTTCTGGAATAAAGTCGATCATCTGATCGACGAGTTAG 1129 36 100.0 37 .................................... TGATGTTCAAACAGGTAGCCCACAGGAATATGACCTA 1202 36 100.0 40 .................................... AATCTGCAACGCCCTATCAGAGCTACAAGATCAGCTAGAT 1278 36 100.0 41 .................................... CAAATATCTCGCTATCCCCCACTGCTCAGCCGCATTCTTGA 1355 36 100.0 40 .................................... TATCTGCATTACGCAGAGACCCCAACGGCATACATTGGGA 1431 36 100.0 36 .................................... AGGTAGACGAGGTGAGACAATGCTTACGATAAACGT 1503 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 20 36 100.0 38 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Left flank : AGTAAATTATATTACAGCAGAGGATGCGCTTAATTGGTTCAATCATTGTGGTTTATTTACATGAAAACTGCTGTAATAGGGGCTTTAAGCCTCTATTAAG # Right flank : TCCCTCCATTTTAAGCCCTTGCCCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTCTTTTTCACCTCCACTACCCTCAAAATAATGGCTGAAACCCTTACCCCACAAGGCTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCAGTTCCTTCGTTAATTACTAGTTTTAGTGTCATTTGTATTACTTTACTTTTTAAATATACTTGGTTAATAAAATTTAAAATAAATCCTGGAATCCCCCTATTATAGAGAATTTATAGAATAATAGTCAATATTGTAGAACCAACAACATAATGTAACATTTAAATTTTCTAATGTCAGTCGTTTATTGGAGATTTTAGAGAACAAATCCAGCCAGGTTCTAGATGAGATGAAAAAACTATCCGAACCACTGTTTTTATTAACACTACTACTGGCGATCGCATGAGATTCAAAATACCCAATAGGCATCAAGTATAAAGTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 42-1424 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVMC01000026.1 Cylindrospermopsis raciborskii Cr2010 Contig_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 42 36 100.0 38 .................................... GACAATCTTTCAGTCTCTCTCTCAATTCCTCTAACAAT 116 36 100.0 39 .................................... AATTCAGACGAGGGATTAATGCTGAAAAACGATTGGTGG 191 36 100.0 40 .................................... ACCCATTGTCCTTGGGTCATGTCAATAAACTGCCAGCTCT 267 36 100.0 37 .................................... TTAAAACTGTTAGGGGCCGCGCCTCTAACAGAAAACA 340 36 100.0 50 .................................... AACTGGTCGGCTGCCATGAGCATTTCATGGTTGCTCCTTACCAATTGGTA 426 36 100.0 37 .................................... TAGCCATTCCCCTCTAGATGGTCAATCAATCGCTCTG 499 36 100.0 34 .................................... CATCTATCCAAGACTCTCTAACACCATTGTTCAT 569 36 100.0 38 .................................... CAGAGGTACGGCTGTAGTTGTGTAAAAAGGACAGTACC 643 36 100.0 39 .................................... ACACAACACTGACAAGATGTCAAAGATGTGAGGTGGTGG 718 36 100.0 40 .................................... CAAGAAGTAGTAACCTCTTGGGGTGTCCAGGACTCATATT 794 36 100.0 39 .................................... AATTAAATACCATACAGGTATTCAAAGTCTGAGGCAACC 869 36 100.0 37 .................................... TCACCACCGTTTTCGAAGAGTTCTATACCTCCTCTAA 942 36 100.0 37 .................................... TTGTTTTTAACAGCATTGCCGTCTTGGTTCAGGAATA 1015 36 100.0 40 .................................... GGTCTTCTGCCAGAACTAGCTTAATTGCGGAATTAAGCTT 1091 36 100.0 38 .................................... CTGAAACAATTGCAGCAACAATCGAGATAACCAACTCA 1165 36 100.0 41 .................................... TCTAGGTTTCTAGAAGGTGTTTGTTTGAGGGCATCACTCTG 1242 36 100.0 39 .................................... TTAGAGACGACATCCACATTCACTCCGTCCTCCAGGGTG 1317 36 100.0 36 .................................... TTTTTTATAGGATTACCATCTTCAACGGTGAAGACG 1389 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ================================================== ================== 19 36 99.9 39 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : GGGTCTAGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGGG # Right flank : ATTGAGTATATTTAGTGTAGATAAGTAAATTCGCAAACTTTAACTTTCATAAGAGAACTAAGTGTTAAGACAAATAAAAAAGAGGGAGGATAATCTTCCCTCTTTCATTTAAGTATCTATAGATAAAGACTACTACAATCATTAGGTCGGGCATGTAGATATTTAGTTGTAGTAGCAACAGAAGAATGACCTAAAGATGTAGAAACTTGATTAATATCAGCACCATTGTGTAAAGCTAAGGTAGCATGAGTGTGGCGGAGCCAATGGGGACTGGCGCTGATACCAATTCTTTTAGAAGCAGTGCGAACAATATCCCAAACAGCTTTTTGTGTAAGATTTTTACCACCCTTGCGAGATTTAAATACAGGAGACTCATTAGTAGTTTTATGCGACTTTAAAGATGTCCATAGTAAAGGAGGAATGATTAAAGTGCGTTGTTTGTTACCTTTACCAGTAATATGAACATAAGCAGTAGAACCATTATCTTTAATATCTGCCCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 42-656 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVMC01000009.1 Cylindrospermopsis raciborskii Cr2010 Contig_70, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 42 36 100.0 37 .................................... TTTTAAACAGAGCAGTAGTATCAGTAATATCTTCTAG 115 36 100.0 38 .................................... TGAGGAAGTTGCAGTGGAGGGATTTACTGCACAGGGCA 189 36 100.0 37 .................................... GATGAGGTTTTTATCTAGAATTTGTAGAAGTCCTCTA 262 36 100.0 37 .................................... TGAAACAGATCTCGGAGATCTGCTCGAGTAAAACCGT 335 36 100.0 38 .................................... AGAGATCACCGGTGAGGAGGTTACCTCAGGAGAGGTTA 409 36 100.0 36 .................................... CAGCCTTAGCAGCTTTTACAGCGGCCTTGGCAGCGA 481 36 100.0 35 .................................... TTAATTTTTATTTAATAGAGGTTGAAGTGAGTTAA 552 36 100.0 33 .................................... CCATCCGTCAATCGGTACCCAGCCGATCTGCAC 621 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ====================================== ================== 9 36 99.7 36 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : GGGTCTAGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGGG # Right flank : ATTGAGTATATTTAGTGTAGATAAGTAAATTCGCAAACTTTAACTTTCATAAGAGAACTAAGTGTTAAGACAAATAAAAAAGAGGGAGGATAATCTTCCCTCTTTCATTTAAGTATCTATAGATAAAGACTACTACAATCATTAGGTCGGGCATGTAGATATTTAGTTGTAGTAGCAACAGAAGAATGACCTAAAGATGTAGAAACTTGATTAATATCAGCACCATTGTGTAAAGCTAAGGTAGCATGAGTGTGGCGGAGCCAATGGGGACTGGCGCTGATACCAATTCTTTTAGAAGCAGTGCGAACAATATCCCAAACAGCTTTTTGTGTAAGATTTTTACCACCCTTGCGAGATTTAAATACAGGAGACTCATTAGTAGTTTTATGCGACTTTAAAGATGTCCATAGTAAAGGAGGAATGATTAAAGTGCGTTGTTTGTTACCTTTACCAGTAATATGAACATAAGCAGTAGAACCATTATCTTTAATATCTGCCCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //