Array 1 2262336-2261330 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTEZ010000001.1 Planomonospora sp. ID67723 NODE_1_length_2703498_cov_358.854063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================== ================== 2262335 29 100.0 32 ............................. GTGCGTCTCGGCAGCAAGCCGTATGCGTTCAA 2262274 29 100.0 32 ............................. CTCGTCCTCGGCTCCGGCCCCGAACTCCGACT 2262213 29 100.0 32 ............................. CGCGCCCGCCGGGACGCCGAGCAGCAGTTCGG 2262152 29 100.0 32 ............................. TGACCAGGGCGTCAGCCAGGGTGGCCAGGCCG 2262091 29 100.0 32 ............................. GCGCCCGACGCGCGAAACGACTGAATGGTTTA 2262030 29 100.0 31 ............................. CCACCGGCACCGTGGACGAGTCGACGTGGCG 2261970 29 93.1 32 .....T.................A..... ATGCCGATTCGATTGACGAGTTCCAGGCGCAC 2261909 29 100.0 32 ............................. GCCCAGGTCGAACTGATGCGGTCGCTGAACGT 2261848 29 100.0 32 ............................. TCATGGTGAGCACCTTGGGTCAGGTCGTGGAG 2261787 29 100.0 32 ............................. GGTGAGCCCGGACCGGCCGGACCTACGGGCCC 2261726 29 100.0 33 ............................. GAGTGGTAGAAGTCGCCTGTCTCGCTGCTCAGA 2261664 29 100.0 32 ............................. GACTCCATCGAGATCCGTCAAGACCCCGACCA 2261603 29 100.0 32 ............................. TCGTGAGACCCAGCGGTAAGCCTTACTGCCAT 2261542 29 96.6 32 ............................A GTGTTAGGCATCGGGCCTTTTGCTCCTTAGCG 2261481 29 86.2 94 .................A...A..GT... CTGCTTGTCCCTGCGCCCCGGCCAGCGCCCACGTCGGCCCCGGCGCTCGCGGAGATGGTCCGGGGTGCTCGGTGACACGGAGGCGATAGAACGT 2261358 29 69.0 0 ...GG.G..G...T..C....A..GT... | ========== ====== ====== ====== ============================= ============================================================================================== ================== 16 29 96.6 36 GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Left flank : TCCGGGTATCCAACAAGTTCACGGGACCCGTTTTCGTCCTGAACCTGAAAGCAGGACATGCACTTTCCAATATCGTGCATACCTGCCCAATATGCCATTAACTGGCGTGCATGCCCCTCATCGACTCCCAGGCCCACAGCCAAGGAGACACGCAGGCCGGGCGAGAGATAGCCGTCCCACAAGGCCTCTGCCGCAGCGGCAGCGTCAAGGAGGTGACAGATCAACGGGTACCTCCCAGGAAGCCCCCGGGACTTCCCCCATAGCATCAGGTCGACGTTCGGCGAGCCACCCATTCGAGCACTCCACTTTTGGAACACAAGGTCGATAAAAACCGGAATTCGACTAGATCATCAAGTGCGACATCACTGTAGAGGGGCGGACCGACATTTCCGGAGAGATTGACTAATATGAAAGTTTTTCTCAATAGACGGGATGACCTCTTGCAGGATCTGGACATTGGAAAAATGAAGTCTCCGCTGTAACGTCGCAGGTCGCGAAGT # Right flank : CGCCTGGCAGCCGGATGCGACTCGCTGCTGAAGTTGGCCTCACAGGTACGGGGCATACGCGAGGCGATCCCTCAAGGGGACGGGCTCTCAGGACGTTCATGCAGATCACACCGCATGAGTCAGCCATACGGCCGCCACTTTCCTGAAGCGGTGACCGTCCCTCTGACTATGAACTCATATCGACAGTACTGCGGGCACCGTTCAAGAGATGCTTGCCGTCGTGTTGACGGATGGCGGGAACATGGGCTGAGTCCATCGCATCCAGCACCCTGATGGAGAAGGCTTCTGATGCCAGGACTCGCACTTCATCAGTGGTAACCCAGCGGAAAGCGCGGGACTCATCGGTCTCCGTGAGGGCGCCGGCTACTGCTCGGCAGCGGAAAACCAGCGCGACGATGCCGCGGGGCATGTTCTTGTAGACGCCAGTCAGTGCGACGGGCTCGACCTCCAGACCGGTCTCTTCCCACACCTCGCGGATCAAGCCGGATTCGATGTCCTCA # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2271280-2273380 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTEZ010000001.1 Planomonospora sp. ID67723 NODE_1_length_2703498_cov_358.854063, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2271280 29 100.0 32 ............................. AGATCCTCGTCACGGTTTTTGAGAGCCTGCAC 2271341 29 100.0 32 ............................. GTCCGCGACAGCGCGCCCATCATCCCCGACTG 2271402 29 96.6 32 ............................A CAGGCCCCCGCCCTCCCCTCAGGGAGAGCGGG 2271463 29 100.0 32 ............................. AAACCTTGAACCCGCATACCGGCGATCCAGCC 2271524 29 100.0 32 ............................. GCCCTCGGTGGTCCCGGCCGGCGCGCGGTGGC 2271585 29 100.0 32 ............................. AACGACGACTCGGGGTTGTCGAGGCTATCGAA 2271646 29 100.0 32 ............................. GCTTTCTTGTCCCTGCTGATGTCCGGCAAGCG 2271707 29 100.0 32 ............................. GTCAAGAAGCGCGACTTCCCCGCCCCTGCTGT 2271768 29 100.0 32 ............................. CGGGGCAGGTCGTTGCCGCCCTCACTGCGAAC 2271829 29 100.0 32 ............................. GATGTGATGACGTCCCGCTTCTGCGTCAGATC 2271890 29 100.0 32 ............................. GTCGCCGAGGCCGCCCGGCTCTACGCCCTGAG 2271951 29 100.0 32 ............................. AACCCGATCCCCTGGCCCGGCGCCTCCCGGCC 2272012 29 100.0 32 ............................. GCGGTCAAACCGGCGACGACGCCTTCTTTGAC 2272073 29 100.0 32 ............................. ATGCTCAGTACGAACCCGGCCGCGAGGGCCAC 2272134 29 100.0 32 ............................. CCGACGCCTACGTGCGCACGCTCTCCGCCCAC 2272195 29 100.0 32 ............................. ACGGTGGCTCGATGGGGCCGGGAAGGGCTGAT 2272256 29 100.0 31 ............................. GCCGCCCAAGTGCTGCAGGCGCAGGGCATCC 2272316 29 100.0 32 ............................. CCCTCGGCGAGGTCGGACCACTCCAGCGCGGA 2272377 29 100.0 32 ............................. GACGGGTATCGACTGCGCCATCTACTGAGGGC 2272438 29 100.0 32 ............................. GCCGCGTACACCTCCGTGAGCGTGGCGGCCGA G [2272460] 2272500 29 100.0 32 ............................. CCGCCCAGCAGCGGTGGGAACGACGCCAACGC 2272561 29 100.0 31 ............................. GGGTCGGCCCAGGAGTCGGCGCCGCCGGGCA 2272621 29 100.0 32 ............................. GCCGACGTGCGTACGAGCCGCGGTCCTGAGGG 2272682 29 100.0 32 ............................. ACGTACGCCTGAAAGCGCTGCTCGTCCAGCTC 2272743 29 100.0 32 ............................. TTCCCCAGGTAGTTCGCCTGGTGGCTCATGTT 2272804 29 100.0 32 ............................. AACAGGATGTTGGAGCCGGCCATGTCCGGACC 2272865 29 100.0 32 ............................. GTCTGCACCGAGATGGCCGACCGATTCGTCAA 2272926 29 100.0 32 ............................. ACCGAGGCGGCCCTATTGCAGCTCGGCGCCAG 2272987 29 100.0 32 ............................. GCGACGGAGCTGTCTGGGCGCATCCGGGAGAA 2273048 29 100.0 31 ............................. AAGAGCAGCACCGCGCCGCGCGGCCCCACCC 2273108 29 100.0 32 ............................. CCGGGTGCCACGCTCCCGGCGCGGCCGGGCGA 2273169 29 100.0 32 ............................. GTGGAGCGGGAGATGCTGAGTTCGGTGCAGAA 2273230 29 100.0 32 ............................. TACAGGTGCAGTCCGCCGCGGCGGGTGCGGAC 2273291 29 100.0 32 ............................. TCCGCCGGGCGGATGACAGCGGCCACGTCGTC 2273352 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.9 32 GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Left flank : CCAGACACTCATCGATCCCATCGCCGAAAAAGCTTCGACGGTCGAGCGGAGCAGTGATCTCGTGCACCTATGGGACCCCCAGGCGGGCGCGCTTGCCGCAGGTGTGAACTATGGGTCCGAGACCCTCGACTTTTCCCTGGAGTAGCCGATGGCTTCGATGGTTGTCATCTCCACAACCGCGATTCCCGACCACGTCGGAGGAGCCCTCTCCCGCTGGCTCATCGAGCCCTGCCCCGGGCTCTTCGTGGGCACCGTATCCGCTCGGGTTCGAGACGAACTCTGGTCGGCGGTCAGCGCAAGCGTGGGTGAGGGTTTGGCGGTTCTCGTCCATCCGGCGGACACCGAACAGGGATTCGCGATCCGTACGGCAGGCCAACGCCGACGCCATGTGATCGACTTCGACGGCCTGCAGTTGATTAGGTTCACTGCTGACGGCCTGAACGGTGCGTCTCGCTCGTCAGAAACTCCAAGTGCGATTGTGAAATAGCAGGTCGGTAAGT # Right flank : GCAGAACTCCGGCGAGGATGTCGCCTGGAACACGTCCTCCTGTCAACGACGCTCGAACTCTGACCCCCTACCGACGACTGAAAGTTGACCCCCTGACGCTGATGTTGGTCACGGATTGTCGCTAATGGTCGTTGCCGGATTCGGCCGCAGGAATCCTGCCCAGATCACGGTTCTTCAGCCGGTAACTGTCTCCCTTCAAGCTGATGACCTCGGCGTGATGGACGAGACGGTCGATCATCGCCGCGGCCACCACATCGTCGCCGAACACCTCACCCCAGCGCCCGAACGGCTTGTTGCTGGTGACGATCAGCGACGCCCGCTCGTAACGGCTGGACACCAGCTGGAAGAACAGGTTCGCCGCCTCGGCCTCGAACGGGATGTAGCCCACCTCATCGACGATCAACACCGGGATGCGGGAGAGCTTGACCAACTCGTCCTGCAACCGGCCGCCGGCATGTGCCTCGGCCAGGCGGGCGACCCATTCGGCCGCGGTGGCGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCCCGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2275591-2275802 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTEZ010000001.1 Planomonospora sp. ID67723 NODE_1_length_2703498_cov_358.854063, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2275591 29 86.2 32 CA....................T....C. AGCTGCGAGGTCTGCGGCAGCACGACGGCGAT 2275652 29 89.7 32 .............C........T....C. TCCTTGGCCCGTTCGACGGGCCGGGACTCGAA 2275713 29 100.0 32 ............................. ATCGACCGTGACCTCTCCCAGCCGCGCGAGCA 2275774 29 79.3 0 ...G....T............AT..T..C | ========== ====== ====== ====== ============================= ================================ ================== 4 29 88.8 32 GTCCTCCCCACGCTCGTGGGGGCGAGCTG # Left flank : ACCAGCACCGGCAGGATCGCCGTCTGTCCGGCGCCCACCGGGATCCGCACCGGCGGGAACCACAGGTCGCACTGGGCCAGTTGCCCGGGCTGATACGTCGTGCGCGAGGCCGGGTCGGCGGGTTTGTAGTGCGGCCGCAGCAATTGGATGCGGTCCTTGAGCACGGTCAGGGAGTTCTGCCAGCCGATCCGCTCGGCGATCACGGTGGCCGGCATGTCCGGGAACTCCTCCAGCAGTTTGCGGATCTGCGGCTCGGCCGCGTCTGCGATCGATCCCTTGCTCGCCCGCCGGTACTTCGGCGGTTCTGTGGCCGCCAGCGCGCGCTTGACGGTGTTCTTCGAGATGCCCATCCGCCGAGCGATCGCCTTGATCGGCATGTTCTCGGCCCGGTGCAACCGGCGGGTCTCCGCCCAGTCCTCCACCTTGATCACCCTCCACGATGACAGCGGAGGGGTCAGATTTCGGCCGTCGCCTGAGAGTCAGTTTTCACGCGTCGTCGA # Right flank : CTGCGCCGCCTCTATCATTCGGGTGACAGTAGGTGATCCCAGTGATCCAAAACATGCGGCGCGAGCCATATGCGGGCCAAGAACCCGAGGAGCCGGGAGAAATTGCAGATCATGGCTTGATCGGGGAGGGGCCTCCGGAGCCGGGAGCGCAAGTTCGAATCTTGCAGGGGGCACGCATAGTGCGTTAAGGCGGGACAAGCCAATGCTTGTCCCGCTTTTTAGCGTTTGAGTTTCGGTCGGGTGGTTCGACCTGAAGGTCTGCAGAAGCGATCATCGTGATGGCTGCCGGAGGTTACGCTTGGCGCCGTGGCGGAGTTGAGTGAGGCGCAGTCGGACGCGCTGGTCGAGCAGGCCACCGTTGACGCCTACGACGACGATGAGTGGCTCTCCGGGTTCCACGTCATGATCGAGGACAATCTGGCGATGCCGTTCCGGACGACCGTCTTGGGCGTCGAGGTCACGGTCAAAGGGGTCGAGCTGCGGGCGGGGAGCGGGATCGT # Questionable array : NO Score: 3.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCTCGTGGGGGCGAGCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //