Array 1 1066410-1067702 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP040798.1 Streptococcus sanguinis strain CGMH058 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1066410	    36	 100.0	    30	....................................	AACTCACTCCTCGAGAATGCTGGAGGCTTC	
   1066476	    36	 100.0	    30	....................................	AGAAAAGAAACCTGTTTTACGTTCATCAAC	
   1066542	    36	 100.0	    29	....................................	GGCTGGGTCGCGGCGTGGGTGCTGGTTGG 	
   1066607	    36	 100.0	    30	....................................	GAGGCAAGCAGGCGGGTTGCTCTTTGCTCT	
   1066673	    36	 100.0	    30	....................................	TCCAATCACAGGACCTACCTCAACAATCTC	
   1066739	    36	 100.0	    30	....................................	TAAATTCAGAGTGGATTGAAACTCTGTTGA	
   1066805	    36	 100.0	    30	....................................	GCCGCAGTGTGTCAACCAATGCCTGTGTTC	
   1066871	    36	 100.0	    30	....................................	CAACAGGACTACGAATATTACTACGCCGCA	
   1066937	    36	 100.0	    30	....................................	GCAACTACCCACTGGTAAAGTAAAAGTTGA	
   1067003	    36	 100.0	    30	....................................	CGGCAAAACGTCAGGTATTTATATTGTTGA	
   1067069	    36	 100.0	    30	....................................	ACGGTGCGCCTTGTAATGTCATATCAGTAA	
   1067135	    36	 100.0	    30	....................................	TAGTCCCCAACAAGTATGCTAAGGGTAGTG	
   1067201	    36	 100.0	    30	....................................	CCCGAACAGCCAGCAGCAGGCGCAAGGCCA	
   1067267	    36	 100.0	    30	....................................	TGAACAAACAAGCGGAGGGCGCAAGTTCTA	
   1067333	    36	 100.0	    30	....................................	CGACAAAAAAAGCCGGCGGAGTGCCAGCTT	
   1067399	    36	 100.0	    30	....................................	CAGCCTATTAAATTTAATTTAAAAAATCCT	
   1067465	    36	 100.0	    30	....................................	AAAAGAATCAGCCATACTTTCAGAAACATT	
   1067531	    36	 100.0	    30	....................................	TATCAACCAAGGCTTCATTCATATTAATAA	
   1067597	    36	 100.0	    30	....................................	CTCTTCCGCAACTACCTCAGGCTCTGGCTT	
   1067663	    36	  80.6	     0	....................T.TT.AT..T.....A	|                             	TT,A,T [1067685,1067694,1067698]
==========	======	======	======	====================================	==============================	==================
        20	    36	  99.0	    30	GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   ATCAACTCAATGACAAGCCCGAAGTCAAGTCCATGATTGAAAAGTTGGTTGCTACGATTACAGAATTGCTGGCATTTGAGTGTTTGGAAAATGAGTTAGACCTAGAGTATGATGAGATTACCATTCTAGAGTTAATCGATGCACTTGGTGTCAAAGTCGAAACTCTGAGTGATACACCTTTTGAAAAGATGCTAGAAATTGTTCAGGTTTTTAAATATCTTTCAAAAAAGAAACTCCTTGTTTTCATCAATGCGACCGCCTATCTATCAAAAGATGAGTTAGTAAATCTGACAGAGTACATCCAACTCAATCAACTAAGGGTTTTATTTGTCGAACCTCGAACAGTCTATGATTTTCCGCAGTATGTGCTTGATCAAGACTATTTCTTGAACTCTGAAAATATGGTATAATAAGAGTAACCATTGGGACCTGACGAGCTGAAGTCTGGCTGGGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG
# Right flank :  AGAGGCTGGGACAAAAATCCAACCTCAAATATAAAAAGCGAACAAAACTAGTTTTCTGGCAATCAGAATTCTGCTTTGTTCGCTTTTCGCATTTCGCATTTAATTATAGATTTGAAGGGCTTAATAATTAAGATTTTTAAAAATTGAAATCTTTTTGTCCCAAACTCCTTATTCTCTATTTCCCCAAGCAGAATTGGCTGAAGAGTTGGGTGATAAGCTCGTCTGGTGCGGCGTCACCAGTGATTTCGCCGAGGATTTCCCAAGTGCGAGTCATATCGACTTGGAGAAGATCTACCGGCATACCCATTTCCAAGCCTTGGTTGACAGCTTGCAGGCTTTCCAGGGCTTTTTCAATCAAGGAGATATGGCGAGCGTTTGATAGGTAGGTGGCGTCTTGCTCGACAATACCAGCATTTTCAAAGAAGAGCTGATTGATGCGTTCTTCAATTTTATCGATATTTTGATTGTGAAGGACAGAAATCTTGATGACATCAGTTGGC

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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