Array 1 1128959-1128693 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RBYY01000001.1 Listeria innocua strain Lin13-003 Listeria_innocua_Lin13_003_Contig01, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                                                          	Insertion/Deletion
==========	======	======	======	=============================	=========================================================================	==================
   1128958	    29	  62.1	    73	.C...GAAA.AG...GC.....A...G..	TTTATCTGATTTTGAACAGGTCGACAGAAACAGCCTTTTGAGGTAAGATGGGAGTAAGAAGAAAATCGCACGG	CG [1128938]
   1128854	    29	 100.0	    37	.............................	TCTCGAATTGCTCCTCCAGCAGCTTGCACCTTATCAA                                    	
   1128788	    29	 100.0	    38	.............................	TTTATTGCAAATAAAGGTATTGATTGAGCTATAACTGA                                   	
   1128721	    29	  75.9	     0	............C..CA......AA..GC	|                                                                        	
==========	======	======	======	=============================	=========================================================================	==================
         4	    29	  84.5	    50	GTTTTAGTTACTTATTGTGAAATGTAAAT	                                                                         	       

# Left flank :   TAAATCGTAAACCAAGACCGCACGAAGATGAGATTATGAGCGTTATCGGCGACGTGAAAGGCAAAGTCGCAATCGTTGTCGATGATATTATTGATACCGGTGTACGTGCCACAACCTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGCTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACCATCTCCATCGGACAAATCTTAGGCCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAAGGATAAGTAGAAAACAGTAACTAATAGAGTTGCTGTTTTTTGTTTTTAGTAAACTATCGACCAGCAGTAACGTAAAAAACACTGAAAACCGACAGAAAGTTGTGAATGCTTGGAGGAAGCGGAGTTTAGAGATATTT
# Right flank :  CCAATATATAATCTTTGCTCACATTTAAAAATCACATTTTCAATCTATATCCATTAAAATATTGCTTTTACCAGCTCTCTCAAAAACTCAAACATAATCTGGAGGACATCAACATGAAAAAAGTTCTAATGCCACTTATGCTACTCGCAGTTTTATTATATGGGTGTTCATCACAAAACGAAGAAGTAACGAAAGAAACTGCCATTTCGAAGACGATTTCTATACGGGCGGACTACACTATTCCAGCAAATTTGGATGAACTAGCAGCCAACAGTGATTCTATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAGTACGATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAAGGCGAAAAAGTAGATATTTCGGAACCGTGGTATTTAAGTGATGATAAATATGTCGCGGTTGAAAACTATATTGCACTTGAAAAAAATGAAGAATATACCTTGTTTCTAAACGAGAGC

# Questionable array : NO	 Score: 3.84
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.23, 5:0, 6:0.25, 7:-1.24, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTATTGTGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.17%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [3-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.68,4.5   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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