Array 1 321135-322200 **** Predicted by CRISPRDetect 2.4 *** >NZ_AETN01000019.1 Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052 isolate FDA_2010_223_Clinical-NC-1 SEEM0052_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 321135 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 321196 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 321257 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 321318 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 321379 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 321440 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 321501 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 321562 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 321623 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 321685 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 321746 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 321807 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 321868 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 321929 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 321990 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 322051 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 322112 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 322173 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 338336-339829 **** Predicted by CRISPRDetect 2.4 *** >NZ_AETN01000019.1 Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052 isolate FDA_2010_223_Clinical-NC-1 SEEM0052_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 338336 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 338397 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 338458 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 338519 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 338580 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 338641 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 338702 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 338763 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 338824 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 338885 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 338946 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 339007 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 339068 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 339129 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 339190 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 339251 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 339312 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 339373 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 339434 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 339495 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 339556 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 339617 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 339678 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 339739 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 339800 29 93.1 0 A...........T................ | A [339826] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //