Array 1 129276-128228 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUKT01000002.1 Chromobacterium haemolyticum strain H3973 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 129275 28 100.0 32 ............................ AATTCGCAGCCTTTTTTGTTCGAGTCATATGT 129215 28 100.0 32 ............................ AGAGTATGGCAGCGCGATAAACGCCGCCGCAA 129155 28 100.0 32 ............................ GTCACGCAAAAGCCTTGCGTGATTACGGCATC 129095 28 100.0 32 ............................ TGTCGGCATGGGCGCGGGCGAAGCTTCTGCGA 129035 28 100.0 32 ............................ TGGAGCAAGTGGGCGAGCCTATCGGGGTCTTC 128975 28 100.0 32 ............................ ATGTAGAAAGCCATGCCGGAAAGCGAAGCATC 128915 28 100.0 32 ............................ TTGATAAAGAGGTTGGTTGCGTGGTGGTACTT 128855 28 100.0 32 ............................ ATGCCGTCGCACGCAAAGCGCGTCCATGGACT 128795 28 100.0 32 ............................ ACTACGCAAGCTTGGGCGGTGCCAACGCTCGC 128735 28 100.0 32 ............................ GGCGTCATCCCAGTCCACGCCGTCCGCGATGT 128675 28 100.0 32 ............................ ATATGCGTCCGGGCGGCCGGCTTCATACCACC 128615 28 100.0 32 ............................ CGCAGATACATGACACACGCCTGTTCCCACGT 128555 28 96.4 32 ..............A............. TTCACATGAGCGGCATTGCCAAGGCGTCCGGC 128495 28 96.4 32 ..............A............. ATACAGGTTCAAAACCTGAAAGCCGCGAGCTT 128435 28 96.4 32 ..............A............. ACCGACGAAATCATCGTTGACCTGTTCGCCGG 128375 28 96.4 32 ..............A............. TGCTGGCCGCTACCGGGCGAGTCCCGGCAACC 128315 28 96.4 32 ..............A............. CTGGTAATCCAGGGCGGAGTAATTGGGTAGCG 128255 28 75.0 0 .............CA.......CCCC.C | ========== ====== ====== ====== ============================ ================================ ================== 18 28 97.6 32 GTTCTCTGCCGGATGGGCAGCTTAGAAA # Left flank : ACGCCGCCTTGCAGCGGCTGATGGCCGGCGACTGGCTCAGCGGCATGCGCGACCACATCGCGCTGGCCGCCATCCAGCCGGTGCCGCCGCAGGCGGAGGCCTGGCAGGTACGGCGCAAGCAGGCCAAGACCAACCCGGACAAGGAACGCCGCCGGCTGGTGCGGCGGCTGGGCATCAGCGCGGAAGAGGCCGCGCAGCGCTTCCCGGACAGCGCCGCCCGCCGGCTGACCCAGCCCTTCCTCACCCTCAACAGCGCCAGCACCGGCCAGCGCTATCAGCTGCACATCGAACAGCGCCCGGCCCCGGCCCCCCACGGCGGCCGCTTCAACGCCTTCGGCCTCAGCCCCGACGCCACCGTGCCGTGGTTCTGACCCTTTTTTCCAAGCCCCGCCGCCAAGCCTGTTAAATCAAGGGCTTGGCGCGGGGTGTGAGAAAAGGGTTTTTATTGGGGAAAGCGATGCTTTCCCCCGCTGACGCGGGTTTGCGGGGGAAAGGCTCTA # Right flank : AACAAAATCAATGCCATATTAGGTATCTAAATTGACATTAATTAGGAAGAAATTATGGATTTGGTACTTGCCAATGTGGCTGTCAGCGTCACCGAGCTCAAGCGCAATTTTGCCGGCATCATGCGCGAGGCTGCTGGGCACCCGGTGGTGATCCTGAATCACAACCGCCCGGAAGCCTATCTTGTCCCTGCCGCCCAGTACGAACGCATGATGAGCCTGCTCGAAGACATTGAAGACGCAAAGCTAGTGCTGGAACGTCGGCAGCAGCCCACCGTCAAGATGGACCTGGATGAGCTATAAAATTGTCTTTCAGGTGGAGGTGGAGGCGGCAGCTACATCCGCTGTCCTCATATCCGCTCCCCAACCATCACAACGAGCCCCGCGCCACATCCCCCCTCCCCAAATCCCTCCTCCCGCAATCCTTCCAATCACATTATTCTCAATTTGAATAACAATCTAATTTTCCAGATTTTTAACATATATGCAATCGTGCTAGATTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGGATGGGCAGCTTAGAAA # Alternate repeat : GTTCTCTGCCGGATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCTGCCGGATGGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 139804-138696 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUKT01000002.1 Chromobacterium haemolyticum strain H3973 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 139803 28 100.0 32 ............................ CTGAATTCACCCCGGACGAGCTGGCGGCAATC 139743 28 100.0 32 ............................ TGTACAAAAGGTCAGGGTATTGAACCAATGGA 139683 28 100.0 32 ............................ GGCAGGCCAAGTTCGGCGCGATGCTGAACCGG 139623 28 100.0 32 ............................ AGAACAAGAAAGCGGAAAAGCTGGGGGTATCC 139563 28 100.0 32 ............................ AATGCGAAAGTGATCGTGCTCGGCCTGGCTGC 139503 28 100.0 32 ............................ TGGATATCGCCGAGCCGCTGCCGTCTCTGCAT 139443 28 100.0 32 ............................ ATGTAGGTCCAAAGAGCATTCAATGCCTTGGC 139383 28 100.0 32 ............................ AGCCCCAGCTCCTGCGCGCCAGGCGAGTACTA 139323 28 100.0 32 ............................ AGCTGCCGGAGCCGTAGAGCTCTACCCATAGC 139263 28 100.0 32 ............................ CGGATCGTCGAACGTAATTAAGCAAAGGACAC 139203 28 100.0 32 ............................ ACTGGTGTGGACGTGCGGGGCGTGGCCGTAAT 139143 28 100.0 32 ............................ AATAAGTAAGGGCCGCCGCGGCGACCCGTTAT 139083 28 100.0 32 ............................ GCGCAGGCGGCGGCCGTGCCGGAGGGGTTTGT 139023 28 100.0 32 ............................ GACCTGTGCAAAGAATCGCTGGACTATGTGAC 138963 28 100.0 32 ............................ AGCGATAGGGAAATTTCAGCCAGGCTTGGAGT 138903 28 100.0 32 ............................ TTGCCACGTTGGGGTATGACGCGCAATGGGCT 138843 28 100.0 32 ............................ TCGCCCCGTGCCGTCCTCGCTGGCGTCGAAGC 138783 28 100.0 32 ............................ AATCCGCCACTCCATCGTTGCCGTGTATCGCT 138723 28 96.4 0 ......................G..... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.8 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CTCCAGCTCGTTGGCGCTGAACAAGGGCGTGCCGCCCCCGCCGCAAAAGCCCACCATCACCCCGGCCTTGGCCAGCTCCCGCATCGCCGCCTGCGTCACCGAGGTGCCGGTGCCCAGCAGGATGCAAGTGGTATTGGCGATGGGGATATTCCAATACAGCGAGGCCTTGCCGGCATCGGTGACGTACTCCACCCGCCCGCCGTTGACCAGCACCCGGCAGTGCTGCAGGTAGTAAAGATTGGCGCGCTTGGAATGCAGAATGGTCTTGAGATCGGACGGGGAAAAATCGGACATGACGATACCTTCGGGATGGAACGCGATGGCATATTTTGCCATGGGCATGAACGGCATGGCAGCCTGCGCGACAAACCCTTTTTTTCCGCCCCCTGTGGCTGACATTTAAAAACAATGACTTAGCGATGGCATGGAAATTTGGGTCAAAGCCGGAAGAATCGCTGCAAATGCCCACGCCATAAGGACTGTGGGCGGTGTAGACTCTA # Right flank : GCCAAAGCGAGGCAATTCAACTCGCTATGCACACCCAATGTTCTGAAAGCGAGCACAGCAAGAATCGGGGCGCCCACAGGGTCGCGCCGCCATAGACTTCGGACATTTCAATAATGCGAAGGAGAACGGCATGGCTTGGCAACTGGAAACCCTGGACCCGGCTTTCGTCGAACGGGCGCGACACAAAGGGATAGACGCGCAGGGCCAAGCCGTGCGGCGGATGACGGCCGCCGGCGGCGAACCTTTCCGCGACGCGCTGCGCCGCGCCATCCCGGGCGAAGAGCTGATCCTGGCGAGCTACAGCCCATTCCACCAAGTCGGGCCATACCGCGAATATGGGCCGGTTTTCCTGGCGGCAGGGCCACAGCCAGAGCCCCCGCCCGAACTATCATCACTACTGCGCCGCGTCGGCAGCAATCCCTACCTCGGCGACCGCATGGCGCTGCGCGCTTACGATACCGAACAGACCATGCTGGAAGCCGTGCTGCTGCCAACGCCTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //