Array 1 2360892-2360567 **** Predicted by CRISPRDetect 2.4 *** >NC_014643.1 Rothia dentocariosa ATCC 17931, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2360891 36 97.2 37 C................................... CAAAGCGCGAACAAAACTCCGTGCACGCGGTAAAAAT 2360818 36 100.0 36 .................................... ACCAAAGTTGCGGATGCCCTTTCGGATGCGGGTGTT 2360746 36 100.0 37 .................................... TATTGGCCGGATTACTATAACCGCGATCAGCCCGGCA 2360673 36 100.0 35 .................................... GACTACCCGAAATTCATGGGCATCACAAAGAAAAG 2360602 36 86.1 0 ............................GC.A.A.A | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 96.7 36 GTCTCACCTGTGAGAACAGGTGACTTTCATTGAGGG # Left flank : AACCCTCAAATCACTGAAGCGAATCGCGTTCAGCTTGCCCTCCAAGGGATCTGCTTGGAAGAGTCAGGGGAAAGTGTTAGCGAATTTTCGGTACATTTTACCGATCATAACAAAACTATTGCGGTTGAGCTCTCTGAAGACGATTTTGCCCTAGCACGAGACTATGTAGAACAGACGCATAAGATCGTTGAATCTGAACATGCGCCAAAACCGTTAGAGGATTCTCCAAAGTGTAGCTGGTGTTCGCATGTCAGTGTTTGTTTGCCGGATGAACATTTTGGGCGTGCATCGACTCAGAAAATTGTGCCTTCAAAACCAGACAGTCAGGTTGCTCACCTAACTGTTCAAGGTTCACGTGCCACAATAAAACAGGGTAGACTGATTGTTCAGTCAAAAGGTGAACAGCTTGGCGATATCCCCCTAGAGAGAATCCACAGTGTAGTAGTTCATGGAAATATCGATATTTCATCTGCGCTATTACGGGAACTCATGTGGCGTAA # Right flank : GAGAAGATGCCCCGTCTCATCACCCATGAGACGGGGCATCTTTGCAGTAAAGGTAGATACTAATCGATAGCGTCGAAATCGACTACATCAAACCCGAGAATTCCTTCGGATGCGCTCACCACCGGCTTATCGCGCACCACATGCCGGTTTGCAATCCAATTGCGGAACGACTCTTCATCCTGCCAATGAGTCATCGCAAAATATTCGGTACCGCCACTGGTGGGGCGCAGCAGTTCAAAGCTCAGGAACCCAGGAACTTCATTGAGCTTTTCGTTATTGTTCTTGAACCGGCGCTCCAGCTCCTCGCCCATGCCTTCCTGCACGCTGAGCTTATTAATCTTGACAACTGCCACGCTAATCCTCCGTTGGTTTTATGGCTTATAGTTAGGGATGCCTGATGAATGCTTTAGTTTTAGCATAGGGCACACCGCGTCTCGATAATAGATGCGCACTATTTATGACGTTATTTTGCCTGTCTCGCAGTATCGCAAGTGCTGCCA # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCTGTGAGAACAGGTGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 2369638-2368430 **** Predicted by CRISPRDetect 2.4 *** >NC_014643.1 Rothia dentocariosa ATCC 17931, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 2369637 36 100.0 34 .................................... AGCCTAGAAGCAATGACCGTGCTGTGGGAAAAAG 2369567 36 100.0 37 .................................... CAGCACAAAACACAGGTCTTAGCGGCTAAATGGGCAG 2369494 36 100.0 37 .................................... GGAACAACTTTTTTGCCCGCGCGAATGATGCCCGCGC 2369421 36 100.0 37 .................................... ATTGAGGGTCAGAAAGGCTTACGGGACGCAATTCGCG 2369348 36 100.0 37 .................................... AGCGGTGACGGAGGCAGCAGAGTTAGCTGACACGTAT 2369275 36 100.0 39 .................................... GAGCCATCCGAAAAACAGCTCATTAAATTAGCGCAGCAG 2369200 36 100.0 37 .................................... ACTCGGTTGAGCAGTCTGCTGCATTATCTTTTCCTTC 2369127 36 100.0 37 .................................... AGAATCCGCAATAGACTGTATAGCGCCTGATACGTCA 2369054 36 100.0 37 .................................... AGAATCCGCAATAGACTGTATAGCGCCTGATACGTCA 2368981 36 100.0 36 .................................... TGGATACCTTGGGCGATGGAATCCAGTTTCTTGTTA 2368909 36 100.0 36 .................................... GCAGTAGCCAATAGAGATGTATCAAGGAGGTCTTGC 2368837 36 100.0 39 .................................... AGAGCAGGAACCTTACGGGCTGAACACTAAGTTCGCGGC 2368762 36 100.0 38 .................................... GCGAATTCAGACGGGCAGATGCTACTAATGTCGTAAGG 2368688 36 100.0 38 .................................... TGCGTATTCGACAACGTCGTGATACCACGATTACGATT 2368614 36 100.0 38 .................................... CACAGTTCCTTTAACGGCGTAACTGCCGCAGGGTTTAC 2368540 36 91.7 39 .............A.G.A.................. ACGTTGAGCATGCGGGTCTTCACGTCATGGCGGGCCCGT 2368465 36 80.6 0 ........TG......CA..............TT.A | ========== ====== ====== ====== ==================================== ======================================= ================== 17 36 98.4 37 GTCTCACCCATGAGAATGGGTGACTTTCATTGAGGG # Left flank : GGCGTCGCTTGAGAACGCTCTGCTGGAATTCCCCGGATGCGCCGTCGTCGTCTCCCACGACCGTTGGTTCCTCGACCGCGTGGCAACCCACATCCTCGCATGGGAAGGCACCGAAGAAAATCCGGATCAGTGGTACTGGTTCGAGGGTAACTTCGAGTCTTACGAGAAGAACAAGATCGAACGTCTGGGACCGGAAGCTGCGAAGCCGCACCGCGTGGTGCACCGCAAGCTTACTCGCTAGGTTAAGAAAGATAAATGCCCCGCTTGTCCGCTATTTCTGCCGGATGTGCGGGGTATTTTACTTTGGATTGTTTCGAGGAACGCGAGCACCTAGTACTTACCGAAAATCCTGGGTTTCGCTCGCGTGAATGAAACACCTTGTCAGAGTCGTTTTGTGTCTGAACGATTGCCTCCGATAGACTGAATAATATGAGCGCTTGTCCCTACGCTCGCGAAAGCGCCTGAGAGACCAGGAATTTACTGGATATTTTTTAGGTGCT # Right flank : TACCTAAGATGGTTCCGAGGTGCTCAGAACCCAGGCTTAACACGAGAAATATGTAGGAAGAGAGATATGACGAAACATAAAGCATAGCTTCATAAATACTGATACTATAAAAAGTACAGAGTTGTTGGTTTACATTTGAAACTCACCTCAAAACCCACTTCTCTCAAAAGCATTTCGTGCGCTGCGTATAAAGCCTTTCAGACTTTATCGTAAACACAAGCAATATAAGTAGAACAATAGCGTTCTACATTAGGTTAGGAGAATTCCGTGTCAATTTCGGATAAAGCTAATATCAGCTTCGAAGATTTGAAGGAAGCATGTGCCGCTGGTGGTGCCTCAACCTTGGTTTCGGTAACAGAGCTTAAACCTGCTGCAGGAGAACATGCATCGATCGCTCCAGCTAAATTTATTGAGGACTCAAAGCCAGTATTCGCCTTCGAGACCCGATTTATTGATGGTAAAGCTGCCCGGGTGGTACTCATTGATAGTAAGCAATCACA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCATGAGAATGGGTGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //