Array 1 16771-18194 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCMC010000006.1 Streptococcus oralis strain E728 NODE_6_length_129091_cov_389.585563, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 16771 36 100.0 30 .................................... ATTGCTTCGTAAAACGCTGGCGTACAATCT 16837 36 100.0 30 .................................... TTGTCCCTAAGAGTTTCAATATTAGTGATA 16903 36 100.0 31 .................................... GGCGAGCTATTGAGGTCACAAATAATGCTAT 16970 36 100.0 30 .................................... TTTATTTTAGATACAAAAAAACACTACGAG 17036 36 100.0 30 .................................... TAGGCGCAGGAGTTCCCGAACCACGTGAAG 17102 36 100.0 31 .................................... TCACCTTCTGTTGGTGTGTAATTCAATTGAG 17169 36 100.0 30 .................................... TTGAGAATAAAATAATGCAGTTCATGTTAT 17235 36 100.0 30 .................................... ACCAGATTGGATAAACCTTTCATTTCCTTA 17301 36 100.0 30 .................................... GAGTTCTCTGATCCAGAGACAACAGGAGGC 17367 36 100.0 30 .................................... AGAAGACAATGAAAACTTCAAGTCCATTAC 17433 36 100.0 30 .................................... GGATCTTCTGTGACGAGGTCGCACTGATGC 17499 36 100.0 30 .................................... ACAAAGTTTATTCTTTTCTAAATCCAAGTA 17565 36 100.0 30 .................................... AACCCATTGATAAAGGAAGTTCTGATTTTA 17631 36 100.0 30 .................................... TTAATATCATTGTCACTGTTGGTCGTATCG 17697 36 100.0 30 .................................... AGGAAACAGACGAGGTTTTGAAGATACTCG 17763 36 100.0 30 .................................... AGAATGTAAAGAACTTAGTTCGCCATGACA 17829 36 100.0 30 .................................... TGAAGAACTTCCAAGGTTCTCAATATCCGG 17895 36 100.0 30 .................................... TACCACTTAATCATAGATATTACACTATCA 17961 36 100.0 30 .................................... ACAGGAACGTTGACTACCTTTGATTCAAAA 18027 36 100.0 30 .................................... TGGTTATTATGACCCAATTGCAACTTCAGG 18093 36 100.0 30 .................................... TTGTTAGCTTGAATAGCTTCTTGCGCATCC 18159 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 99.9 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAGCTCAATGACAAGCCAGAAGTGAAGTCCATGATTGAAAAGCTGGTAGCTACGATTACAGAATTACTGGCATTTGAGTGCTTGGAAAACGAATTGGACTTAGAATACGACGAAATCACCATTCTGGAGTTAATCGATGCGCTAGGGGTCAAAGTTGAAACTCTAAGTGATACACCTTTTGAAAAGATGCTAGAAATTGTTCAAGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTCTTCATCAATGCGATCGCCTATCTATCAAAGGATGAGTTGGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAAGGTTTTATTTGTCGAACCTCGAAAAGTCTATGATTTTCCGCAGTATGTGCTGGATCAAGACTATTTCTTGAACCCCGAAAATATGGTATAATAAGAGTAACAATTGGAACCTGACGATCTGAAGTCTGGCTGAGACGAATAGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTGCGAG # Right flank : AAAGCTACTCATTTTTTGAGTAGCTTTTAACTATTCCCCCTTACACATAGCTCATTCCCTTATAGAAAAGGAAAATGACAAGTGCGACAAAAAGTACGGTTGCTCCGATTCGCTGGCTGGTACTATACATCCTTCTCTCCCATTTGACTGGGAAGATGACTGCTAGAAATGCTCCACCGACTGCACCTCCGATATGGCCTGCTAGGCTGATTCCTGGAATCAGAACACTTCCAATAATGTTAACCACAAAAAGTGTCAGATAGGATTGCCCCAACTGCTGGATATAAGGATTACGCGTTGCATAGCGAAGAACAATAATCGCAGCAAATAACCCATAGAGAGAAGTGGAGGCCCCTGCTGCTACAACTTTCGGTGTGAAAGCAAAAACAAAGAGATTGCCCATCATTCCTGATAAGAGATAGAGAAAGAAGAACTGCTTAGAACCGAAAATCTCCTCCACTTGTCGTCCAAGAAAGTAGAGCGAAATCATATTGACAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 158-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCMC010000088.1 Streptococcus oralis strain E728 NODE_97_length_208_cov_0.511278, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 157 36 100.0 30 .................................... TTGGCGCAGGAGTTCCCGAACCACGTGAAT 91 36 91.7 31 .............G................T...A. TCACCTTCTGTTGGTGTGTAATTCAATTGAG 24 24 66.7 0 ........................------------ | ========== ====== ====== ====== ==================================== =============================== ================== 3 36 86.1 31 GTTTTAGAGCTGTTTTGTTTCGAATGGTTCCAAATC # Left flank : GTTTCGAATGGTTCTAAAACTCACCTTCTGTTGGTGTGTAATTCAATTGA # Right flank : A # Questionable array : NO Score: 4.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.30, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTTTTGTTTCGAATGGTTCCAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //