Array 1 1159206-1158456 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHESO010000001.1 Enterobacter bugandensis strain 120009 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1159205 28 100.0 32 ............................ GTTTGCGCCGCGTTGATAAATGTCGGGATGGC 1159145 28 100.0 33 ............................ AGAGAAGCGTGTTGCGGTGCTGAAAACATTATT 1159084 28 96.4 32 ........T................... TCATCAATGCGGTCCAGCTGCGCGCTGTTACC 1159024 28 100.0 32 ............................ ACCTGCAACGAATTAATCAGGCTTGGACTGCT 1158964 28 96.4 33 ..........T................. CAAAATGGGTCGGTAAAGCGGCGTGGGGCGCTG 1158903 28 100.0 32 ............................ TCCAACATTGCAGTAAGACACCCGCCGCTTAA 1158843 28 100.0 32 ............................ ATGACGTCTTCATAATCCAGCCCCTGTAAGGC 1158783 28 96.4 32 .............T.............. ATAAAAATCGGCTGGCCGTCGGCGCGGTGTAT 1158723 28 100.0 32 ............................ GTCACGTTTTCCCAGCCGCCGATCTCGATCAC 1158663 28 100.0 32 ............................ ATATGAAAATGGCGGGGTTATCCCCGCCCTAC 1158603 28 100.0 33 ............................ TTAACGAGAGCGACGATTTCCCCGATCGAGACG 1158542 28 96.4 32 ................A........... TTCAATCGAATTAACCGACAGTACCGGGAGTA 1158482 26 85.7 0 ..........--...C......C..... | C [1158459] ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGGCTACGCGTTCGCTCTCATCCGGCGTCAGCGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTAATCCCGGTAACGCGCAAAATGTCCGCTTTCGACATGGCCGTCCATTCATGAATATTGTCGAGCACGCTGACGGGCAATCCCTGGTTGAGAAATTCTATCAGCCGCATACCTCTGTTCGCGGGTAAACCGGCATAGCGCCAAAGTGCGTTATCAGCAGGTTTCTTGGCGGGGATCCAGGTTCTCATATTACCTCCTGATTAATGTCATTTGTCATGGTTAAGTATAGCCATTTGTCATATGGAGTGGAATGGGGATTTTTTGTGCTGGGTGGTTTATGAGAAGAACGATGTTTTGACCCTAATTTTTAACGGTTGTGTAATTCATTAATTTTAAATGAGTATTTTTGGTGGATAAAAAAGAGGGTCAGAGAAGGTTTTTTAGCTTTTTTTGTATGCAAATCAGTAGGGTGTGGAGATATTATTTCA # Right flank : ATAGAAAATAAGGCCTAACAGTCGTCGCACCGTGCACTGTCGAACAGACAGCCCCAAATCTCAAACGAACCGCCAACTAATTGTTCAAATAATCAACAGCACCACTAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAAAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGATTAAAACGCAGCAAAACAGTTTCGGCGCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1163884-1163010 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHESO010000001.1 Enterobacter bugandensis strain 120009 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1163883 28 100.0 32 ............................ GAAGGGGATGACGGCCGCAAGACCGTGCTGAC 1163823 28 100.0 32 ............................ AGTACATGATCCCTGGCGACAACGGCAAGGTC 1163763 28 100.0 33 ............................ ATAAGCAGATTATCCGGAGCACGCAACCGCCAC 1163702 28 100.0 33 ............................ ATCAGACGCTCAATCGCAAGCCGCATTTTTGAA 1163641 28 100.0 33 ............................ ACTTATTACCTCCCCCGACCCTGTTGTCAGTGT 1163580 28 100.0 32 ............................ CGCCTCGCTTTGAGCTATGATCGGCAGCGTAA 1163520 28 100.0 33 ............................ CAGCCGCATAACTTTCGTCGTACGCATCTCGGG 1163459 28 100.0 32 ............................ CCGCACCCTGCTCAAAGTCCAACACAGGCACA 1163399 28 100.0 32 ............................ TGAGAACATAGTGGTATGAGTGTGTGATTTGA 1163339 28 100.0 33 ............................ AGTACGCAAAAATGGGACCCGCTCAGAGTGAAT 1163278 28 100.0 32 ............................ AACTGGCAATTTCGGCGGTGCAACCGCTAAAC 1163218 28 100.0 32 ............................ ATGCCTCGATTTCTTTTTCGATAATCTTGTCG 1163158 28 100.0 32 ............................ TGCATGGTCATGCGGGAATAGATAAGCCGCTT 1163098 28 100.0 33 ............................ TGGTGCGTTGCCGCCAGCCGTTCTGAGGTCTGG 1163037 28 75.0 0 .C...............A...GC.ACT. | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCCCCAAACGCAGCCCGTATGCCGTTGCCTCGGGGCTTATCTGGAAGAAGTTAAAACCGGCCTCACGGAATCCATGCGTGATTTTCAAGTGGTGGAATTTGAGGACGAAGCGGAACAACCGCGACAAAAAGAGTGGCTGCTGGAAGATACCGAAACGAAATGTGACTACTGCCGGGCGTTGAATCATGTGCTGCTGGTGTCGCATTTTGACCGCGACATGCTGCCGCATCTTACAGGACTGCTCCATGACATTACGCATTCTATGGCCGCAGATGTTGTTGCGCCTCAACGTGAAGAAACGGTAATTCACATTATTTCCTGAGTGCAATCCAGGGCGTCGGGGGCGTTATTCTGACGCCATTGGTTTATACCCTTTTTTCTGATGCTTACGTAACATATTGATTTATATAGTGCGGATTTACGTTCCAGAAAAAAGGGTTTTAGGCGTAAAAGTTGATTATTTTATTTGCTAACAATAAGATGGCGTTGTTTCCTTTCA # Right flank : AATCTACCCCTCTTAAACATTTACTTTGCCTATTCAAAACTCAATATCATCAAACCCACACTCTCTATTTTTTACAATAAATAAAAAACTCATTCACGCGCCAATTATATTCTAAAAAATATATTATTCGTAAATATAATACATTGAATGGGAAAGTGATTTTTCGCTTTATTATCACGATAATTACTCTTCATTTGATACCCGTCACATTTGTTTTCATCTTATCTTCGATAACATACCCGCATTCAATACCTTGAAATTAAAGCCGTTGCTATGCCTGCAAACAGCGTTACCCCAACAGATTTAAAAACAATCCTGCATTCAAAGCGCGCCAACATTTATTACCTGGAGAAATGCCGCATCCAGGTAAATGGTGGGCGTGTTGAATATGTCACCCAGGAAGGAAAAGAGTCGTTTTATTGGAATATTCCCATCGCGAATACCACGGCAGTGATGCTGGGAATGGGAACATCCGTTACGCAAATGGCAATGCGGGAGTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1181348-1180599 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHESO010000001.1 Enterobacter bugandensis strain 120009 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1181347 28 96.4 32 ...T........................ AATTCCAGCCCCGCCGAAGTCCTGGCGGCTAC 1181287 28 96.4 32 ...T........................ ATGCCGTCCCAACCCCCGCCACCGGGCGGGAA 1181227 28 96.4 32 ...T........................ TCATTACGCAAAGCGCAAAAAGCCTTTCGCAT 1181167 28 96.4 32 ...T........................ AAGCTGACGCAGTAGATCAATCTGTCCGACGC 1181107 28 96.4 32 ...T........................ AAGCCAACATCACGCGAAAGCGCGGCCAGCGT 1181047 28 96.4 32 ...T........................ TTTTCGCCCCGGCTACCGCTAACCTTGCTTCG 1180987 28 100.0 32 ............................ GCACTCGATAAACCAGCTCTGAAAGTTAAACA 1180927 28 100.0 32 ............................ AGCGTGCGAAGGAATACGGCGGCGGCTGGTGG 1180867 28 100.0 32 ............................ AGGAAGAGTACCAGGCGCGTAAAACTGGCACG 1180807 28 100.0 32 ............................ GAGGCAGTGGCGCAGGTTGTTCGGCAGCTTGT 1180747 28 100.0 32 ............................ ATATGCAATGTTACCGAGTTAACACTGTAGTG 1180687 28 100.0 32 ............................ AGTACGCCCTGCGCACCGGGTTGATCGCCTTT 1180627 28 89.3 0 .....................A.GC... | C [1180601] ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTCACGGTTTGCATAAGCTGTTTGGCGGCGTGGGCTTTATCAGCGGCATGCTTGTGGAGAAAGGGCTGCCGGGATTTATTGCCTACGGCGTGTTGATTGGCGAAGTGGTGGCACCGATCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCATGGCTGATGGTGGGAATGGGTGAAACGTTCGCGCTCGATAAGGTTGGGGCATGGGCGATTGAAAGCCTGGTGTACTTCTTTGTTGGCTCGCTGGCGGTGGCGTGTTTAGGGGCAGGGCGGTTTGCGTTAGGGAAAGCGCCTGCGTGGCAATAAAGCTGGGTACTGAAAATATAAGGGTCTCTGGACCCTTTTTCATTGGTGGTTTTTAAGTCTTTGATTTTATTAAGCGGAATTATTTGTGATGAAAAAAGGGTTTAAGGGGTATTTTTTAGGGGAATTCTTTATCTGACAAGGTGATAGGTGTAGATTGTTCCA # Right flank : CGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGATCGAACGTTTATTGCTTATGCGAGGACCAAATCCCCCTGCGGATGGCACGAGCACGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTATATTCCCCTGAAACCACTTTCGTTTTACAGCAGCCGCACACGCCCGCACGGCAGGCCGCGACTACCGGCACCTTGTTGCTTTCCAGCACTTCCAGCAGCGTGGTGCCCACGCGGCCAAAGAAGGTCTGTGCGGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAGCGGGTCACGCCAAGCGCTCTAACTTCTTTCTCCACGATATCCATGTACGGCGCCGGGCCGCAGGTCATCACGGTACGGTTCGCAATGTCCGGCACGCTTTGCAGTAGC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTTACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //