Array 1 26537-26175 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAGT010000032.1 Cloacibacillus porcorum strain 105753 Contig_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 26536 32 100.0 34 ................................ TCAGAAGTATTACGACCGGATGTCGATGCTGGAG 26470 32 100.0 34 ................................ CTTTAGGGACAAGACCTAGGAGTTGGACATTCAG 26404 32 100.0 35 ................................ ACTATTTCCCACCGAAGAAGAACAGCGTGAAGAGG 26337 32 100.0 34 ................................ CAGCTGGACGGAGGAATGAGCAAGTACGAGGCGC 26271 32 96.9 33 .......T........................ ATTACTCGCGATCGGTTGCTGGAAGTAAGACAC 26206 32 90.6 0 ..........T..T.......C.......... | ========== ====== ====== ====== ================================ =================================== ================== 6 32 97.9 34 GTCGTGCCCTCCGCGGGCACGGTAGTTGAAAC # Left flank : CCACAGACCGGATAATAGGAGTAGTCGAGTGGAGAGACGGCACCGTTATCGACGTCGTCAGACAGCTTAAAAAGTAAACAGCGTACAAGCGGCAGTTAAATAGAAAAAAGGGCAGAGGCGTCGCCGTGGGGCGGGGCCTTTGTCTTTTATACGGGCCAGTGTTAAGATAAGAAAAAATAGGCCGCTGTATCAACGGGTACGCTGCGCGACATGAAACGTGATACGCACAAAATTATACTGAAAAGGAAGACATGTCTGCCAGCGCGAAGCTGAAGCGCGCATGATTTTTATAGGAACTTCGCGCCGCGCCGTGTGCCTGTATTCGGCGAATATTTCTTACAAACAGAGAACCATGTAAATGCGGAGATCGCACACTTCGCGCAATATGGGGAAAAATATGTTAGTATTACCATATAAAACAGTTATTCC # Right flank : GGTACCCAGCTCGGAAAGACCGAAATGCAGCTGTCGTGCCCTCCGCGGGGCCATCCGTCATTAATCTGCTTCAAACGGCACCAGCGGCGCGTCGACGGAGGTGTAGAGGACATATTTGGGAGAGCCGTCCTCGTTTTGAGAGGCGCAGACCAGGGGTTTCTTTGAACTTCGCAGGAGCGCGGCAGTCTCTTTCAGCCGCTGGCGCTCATCCGGCTCTTTGTGCTCTCCCCAGCCGCAGTATACCTTGGTGACGCGGGGATTTTTCAGCGCCGCCGCGACGAAGTCCAGGTTGTTCTTCAAGGTCATCAGTCGGCGGTAATATTCGCCGCCGGTATCGATGCCGCCCGCGGTGAATATTTGCAGATAGGCCATATTGTCTCCCGCCGCTCCCGGCTCCGAGAGCAGCCGCTCATTCCCCGTGCTGCGCAGCGCCCAGATATCGGTGATTATCATGCCGCCGAAGCCGTGTCTTTCTGCGATATCAAGGCACCTTCTTGTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTGCCCTCCGCGGGCACGGTAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTGCCCTTCGCGGGCACGGTAGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2969-46 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAGT010000037.1 Cloacibacillus porcorum strain 105753 Contig_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2968 31 100.0 34 ............................... GTTCGCCGCCGGCGGTTATCTCGTGGCCTCCGGA 2903 31 100.0 35 ............................... GCTCGCCGGAGGAGGTGGAGGAGATCCGGAAACAG 2837 31 100.0 34 ............................... TCTTGTTCCATTTTCATATCTTGATAGACTCATA 2772 31 100.0 33 ............................... TGACAACCGCCGAATGCGCGCAGATGGCCGGAG 2708 31 100.0 34 ............................... TAATATTGGGCGATACAGCTGACGGCGATAGGAC 2643 31 100.0 33 ............................... TCTCCTTTCGAGAGCACAAAAAAAGAGCCCTGC 2579 31 100.0 32 ............................... GCTTCACACTCGCTATTGTTTTTACCGTTTAT 2516 31 100.0 34 ............................... TTTTCCCGTGCGTAAGCCAGTTCCCCGGCACTAG 2451 31 100.0 32 ............................... GATATCTCCTTTTGCGATTGCCGTATAGATTG 2388 31 100.0 34 ............................... TTGATATGTCCACTGCCGTGGGAGGCGATCTTGA 2323 31 100.0 36 ............................... CCATATAGATTGCAACAGAAGGCAAGACAATAGGCA 2256 31 100.0 32 ............................... CATACGGGCGCATATCTTTTCCAAGAGGTTGA 2193 31 100.0 36 ............................... CTCTTTGTTTACGTGCTTACTGGGATTGCCCCCCCC 2126 31 100.0 34 ............................... AGATATGGAATCAAGGGCAACAGACTCAAACTGT 2061 31 100.0 33 ............................... GTTTTGCTCTGGCGGATGTACCACCACCAGCTG 1997 31 100.0 34 ............................... ATAACGGCGTTTGCGATCTGTTCGCGGTATTTCC 1932 31 100.0 33 ............................... CGCCATACGCTAATTATGTATCTCTTGGCTTTT 1868 31 100.0 32 ............................... TCTTTCGCCAGCTCTCTTAATCGTCGGTCTAC 1805 31 100.0 32 ............................... TTGTCGGGATCGGGGATAACTTTATCAATGAT 1742 31 100.0 34 ............................... GAGAACCCAGCCCATATCCCTCACAAGCTAACTG 1677 31 100.0 33 ............................... TCGTTTCAATAGGTGAGCCGTTATATACGGGGG 1613 31 100.0 33 ............................... TTTTATCTCACAAAATAGCTATATAACTTGATT 1549 31 100.0 32 ............................... CTCTCACCTTATCACTTAATGCCTTTTTCTTT 1486 31 100.0 33 ............................... GCGGCCACGGCCTCATTTTTCGCCTCAATGGCG 1422 31 100.0 34 ............................... TGCACGTCCGCGATAACGCGCTCTAGCTGCGGGA 1357 31 100.0 33 ............................... ACCTACAAAGACAGCCGGAGGGACATATCGGTT 1293 31 100.0 33 ............................... ATGCCGTTCCGTATCCACATGTAGCGATGCATG 1229 31 100.0 33 ............................... ACCGGCAGCTCGCCGCCATCCATGAGCGCGGAA 1165 31 100.0 33 ............................... TTCGTTGCCGAAGATGACCGCACTGTAAAGTTC 1101 31 100.0 33 ............................... ACTGCGGTGCAGATGCCATTCATGGGAGTAGGG 1037 31 100.0 34 ............................... CCAGTATTGATAATTTTCAAGCAAGGGGAGGCTG 972 31 100.0 33 ............................... TTTGACGAGGTGCTCGCTTTACGAGTCGGACAG 908 31 100.0 33 ............................... AGATTCAAGCAGTTCTATCGCCTCGATATTGGC 844 31 100.0 32 ............................... ATTTCGATGAACAGCCCAGCATACCCTTTATG 781 31 100.0 32 ............................... TTTGTGCATTCGATGTTGTTGTCTTTGAGGAA 718 31 100.0 33 ............................... ATATCGTCTAGGGTCACGCCAGTGTGGAGCGTG 654 31 100.0 34 ............................... GCTCTTCGCGCCGCTGCCAATTCCGATCTGCATG 589 31 100.0 33 ............................... GTGCCGAGCATGTAGCCCTGCATCTGCCGCCAG 525 31 100.0 32 ............................... ATCGACGACGGCGGCATGTTCTCCGAACTCGA 462 31 100.0 33 ............................... GATTCAAACCCGACAGATGCCGGAGTTAAAGCG 398 31 100.0 32 ............................... GTCCATCCGCCGTAAGGGGATTGAACTGGTTG 335 31 100.0 35 ............................... CATTTTTCCATCTCCTATGCCGCCCAGCGTGGCAA 269 31 100.0 33 ............................... CTCCAGAACATAAAAGTCCGCAAGCTCAAGAAA 205 31 100.0 33 ............................... TTTTTTCGTTGAGGATGCAGAAAATGATAGAAA 141 31 100.0 34 ............................... AAATCCGTTATTGATAGTTTTCGCTACTACTTTA 76 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 46 31 100.0 33 GTCACGCCCTCACGGGCGTGCTAGTTGAAAC # Left flank : ATATATCTGGAAGTAGGGATGAGAGATGCTTGTTGTGGTAAGCTATGACGTCAATGTCAGCAGTGAAGGCGGTGCGAAGCGTCTACGGAAAATCGCCAAACTCTGCGAAAACCATGGGCAGAGAGTCCAGTTCTCTGTCTTTGAATGTTTGGTTGACCCGGTACAATGGTCCGAGTTAAAATTTCAATTAGAGAAGAGCATTGATAATCAAAAAGATAGCCTGAGATACTACTTTTTGGGAGCAAACTGGCAAAGAAGAGTAGAACATGTCGGAGCGAAAGAACCATATGATCCTCAAGGATTGCTTTTGCTGTAACATGTATATTTGTGTGTGCGCGAACCCCAAGCATCCGAAAAAATGTTAGAGGGTTCGCGCCCTTGTCTATATCTGGCTTATACAAAGTTTATTTAAAAAACGTACCATGAAAAAGCGGACGAAAAGATGCGTTCGCGCAATAAGGGAAATTTCTGTTAGAATGAGTGCCTTTAGAAGCACTGCC # Right flank : CAAATCCGTTATTGATAGTTTTCGCTACTACTTTAGTCACGCCCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCCTCACGGGCGTGCTAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACGCCCTCACGGGCGTGCTAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 93210-92792 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAGT010000013.1 Cloacibacillus porcorum strain 105753 Contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 93209 31 100.0 34 ............................... GCGCTTCGGGACAGAGCAGAACCAACAGTTGTTC 93144 31 100.0 33 ............................... CCGAAGGCCGATATGGGCCGGCGCGTGATTTAC 93080 31 96.8 33 ....T.......................... TTGGTTCGCACCGCCGCACGGACGGCGGCCTGA 93016 31 100.0 34 ............................... TCACAAATGGCATTCAAGAGGTCAGCGGTTCGAA 92951 31 96.8 35 ............T.................. CTGAGCAGGCCGCATTTTACGAGGTTCGCCGTCGC 92885 31 100.0 33 ............................... CATACGTTGCCGGGCGCAAACCATTGCCCGACA 92821 30 90.3 0 ...........G..T......-......... | ========== ====== ====== ====== =============================== =================================== ================== 7 31 97.7 34 GTCACGCCCTCACGGGCGTGCTAGTTGAAAC # Left flank : CGGCTCAAAGCCACTTTTATTATTATAACTCCTTGGCTTCTGCCATCTTTTATGCCAGAAAATAGCAAAAGTCGAGA # Right flank : TCCCACATATCTGTACGCGAATATGGAAGCATCAAGCGATAATAACATACATACCGTCTTTGCCCTATGCCTCCTGCACAGCGCCCTTCATGGACATCGCTATCAGGTGCGAGCGGACGAAGCCGTAGCTGCGCAGGTTGTCGAGGAAGCGGTGCATACGTTCTTTTGAGGAGAAGGCCGCTTCGATGAGGAAGTCCAGCTCGCCGTAGATCTCCCAGAAGTGGATGACGTCGGAGGATGAGCGCAAAATGGGGATGAGGATGTCGTTGGGCTTTTTATCGTATTTCTGGCCGCTGTTGAATTTGAAGCTTATCATCACGTGGAGCGCGCGGCCCAGCGCGTCGGTGTCTATCTCCGCTTTGTAGCCGGTGATGACGCCGCTTTCTTCCAAGCGCAGTATTCTTTCGCGTACCGCGGGGCGCGTCATGCCGACCGTTTCGCCGATCTCTTTGTATGTCTTTCTCGCGTCCTGCTGAAGCTCCCGCAGAATCTTCCAGTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCCTCACGGGCGTGCTAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACGCCCTCACGGGCGTGCTAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1585-70 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAGT010000051.1 Cloacibacillus porcorum strain 105753 Contig_51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1584 31 100.0 33 ............................... TTCTCTTTGAGGTATATCTGTGGCCTGATGCGC 1520 31 100.0 36 ............................... GTCGAACCATCCGGGCAGATGTACGGGGATTCGCTC 1453 31 100.0 32 ............................... GTCCAAGGGCTTCTCGGTACGCGACTGTATAT 1390 31 100.0 34 ............................... CAGCTTCCCTTATAGGTTTCACCGTCGAACTTTA 1325 31 100.0 32 ............................... AATTAACGCCAACACACCCACTGGTATGTTGA 1262 31 100.0 34 ............................... GTATACTCCACGGCTGAAAGAGAGCGGGATCGCC 1197 31 100.0 32 ............................... TTATATGGCAGCTGGTCGCTGGAAATAGCAAA 1134 31 100.0 32 ............................... ATAGAAGCGGTAATCGCCGGTCTCTTGGATGC 1071 31 100.0 32 ............................... CATATCGGCGTTCTGCCGTGCCATGGCGGCCG 1008 31 96.8 33 ....T.......................... TCTTGCCGCCTTGAGGCAGAGCTCCACTTCCTG 944 31 100.0 34 ............................... GGTCTTAGGCCGCTGTATTATCGCGACAAGTTCA 879 31 100.0 35 ............................... ACGGACGATGCAAATGAATAGCGAAGTTTTATTGG 813 31 100.0 33 ............................... TTTTCTTGCCCAGCCCAATTCTTCGGAGCGGCG 749 31 100.0 34 ............................... CAGAGAGTCTATACAGGCAATTCAAAATAAAATT 684 31 100.0 34 ............................... AAACTATCGCGTCGCACGGAAGACAATTTCAGTC 619 31 100.0 33 ............................... CTCTATGGCGAGTGTAAGAGAGCCCTTCTTGAA 555 31 100.0 33 ............................... TTTTACCAACTCCGGCCAGCCAATAAAAAAAGA 491 31 100.0 34 ............................... ATGAATTCGACCTCTTCGTCTTGGCTGTCGTAGC 426 31 100.0 34 ............................... AAGGTTCGGATTTATGATCTCAAAGGCCGCCGCC 361 31 100.0 33 ............................... CCTTATAGCCGTCAGACTCCAGCACATAGCCGA 297 31 100.0 35 ............................... GAGATTGGCCGTTTACAGGCCGACGCGCTGATGAT 231 31 100.0 36 ............................... CTTGGAGGACTGGCCGCGCAGGAGTGGAGCAGGGCG 164 31 100.0 33 ............................... TTATATTCTCACTGGCGGGCAATTCGGTATAGA 100 31 83.9 0 .......................C.C..CTT | ========== ====== ====== ====== =============================== ==================================== ================== 24 31 99.2 34 GTCACGCCCTCACGGGCGTGCTAGTTGAAAC # Left flank : | # Right flank : TTGGCCGTAACTAGATAAAGTAACAAAAAATACGTAAATCCAGCCCAAAGGACTGGACATTTTCTTGATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCCTCACGGGCGTGCTAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACGCCCTCACGGGCGTGCTAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 133319-132228 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAGT010000004.1 Cloacibacillus porcorum strain 105753 Contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 133318 30 100.0 36 .............................. ATCCAAGCTTAGGGTTCTGTGCGCAAGAGAAATTCA 133252 30 100.0 38 .............................. ACGACCGTGTTTTCCAGATCGCGCACAGGTATCACCGG 133184 30 100.0 37 .............................. TGGAAATGACCGTACAGGTGTGGATTATGGGCGCGCC 133117 30 100.0 37 .............................. TAGCTGTACGCGGTGATATATGGTGCCTGTGTGTTTT 133050 30 100.0 35 .............................. TCGTTAAACTGCTCTTTTTTTCTGAGCAGGCCACA 132985 30 100.0 37 .............................. CCGCCTAGACCTCCGCACGTCGCCGCCGGCGGTGATC 132918 30 100.0 37 .............................. AACGTTGTACGACCATGCCTGCCTTGAGAGTACCTTC 132851 30 100.0 36 .............................. CGAAATATCTTCTCCTGCACACTGTTGACATGGTCG 132785 30 100.0 35 .............................. AACTCTTTACCGTTCATTTCCACATGGGTGTGGCG 132720 30 100.0 37 .............................. GTGCGATGCTTATTACTCTCCCTGTGGCCACGGTACA 132653 30 100.0 36 .............................. AGTGGATGGCTTCGGCGAGACGCTAGCCCCAGCCGA 132587 30 100.0 35 .............................. AGTGTCAGGGTGCTCTTATAGTGATTACAGCTGCG 132522 30 100.0 38 .............................. ACGGAGCGGACGCGGTGGGCAAACTGTCCACCGCGCTC 132454 30 100.0 37 .............................. GCACGCCGGTCGGGTGTACATCCACCGCGCGCCCGTA 132387 30 100.0 35 .............................. AGGTAGGGCATTTTTTTGAGGTCGAGCTTTTCTGC 132322 30 100.0 35 .............................. TTGCGCAGCCTCCCCGCCTAAACCGTCCGCGTATA 132257 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 100.0 36 GATTAGAATCTTCCTGTAAGGATTGGAAAC # Left flank : TGCGTTCAGATGGACGTAAGTATACGGTTTACTTCTCTCCATTCGAAAAAGAGTTCTCTAATTCTATATATAACAACCTTACCCGAAAATATAGGGCAATATATGGTACGGCTGAAATTCCGAAGGGTACTGTTGAAGTATTTCCAATAGGTACACCTAAGGAACGTGTTGCCAAATTTAAAGTGAATGATTCTTTTCCAATAAAGGGTTGGAGCGGCAGGTTTAAAATTAGTGGACCAAAAGAGTTGCTTCAGGTAGCTTTAGACTGTGGTTTGGGAGCAAAGAATAGCTTAGGTTTCGGTTGTATTGCGCCGGATGGTAAATAGGGCTTCTCTGTCGATGTCCAATAGCGCAAAAAATAGCGTAGTTCGACATACATTGTGAAATGTGAGAATAATAGCAGCGGTACAAGTAAATACTAATCTTATGATTGTTTTGGCGTATGCAGTTTTTTGATTGAGACAAGTCAAGGAAATGTGTGCTGACGCGCTTTTTGGTGG # Right flank : TTCGGTTTCAAGCCAGTGGTAGGCGCACCCCAAGAGGATTAGAATCTTCCTGTGATAAAAGAACGCCGGTGCAGTGGGAGGCAATGAAGAGATAAAAAATGCTGCCAATATCTGCCAAGTATGATGCTATGTACCGGGGTGGCTATATAATAGAAACCACGGCGTGCGCTCCATTATTGGCATTCAAGCAAGAATCCGGGAATTTATAGAGTAAAACTACCTATGTCTTAATGATACAGACAAGAGAGTAACCAATTGGCCTATTTACCCACTGACGTTCTCACTGAAAGAACTTATAGACCAAGACACAATGTCTATACCCTAGAATGAATGCAGCCCAATGACAAAACCTCATATGTACGTTATAATGTACATATGAGGTGATCGAAATGTTAAATACTAATGCAACTACGCTGCGCAAAAACCTTTTCGGCATATTGGAACAGACAATCAAGTATAACGAACCCGTGAACGTCAGCACCAAGGACGGCAACGCGGTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAGAATCTTCCTGTAAGGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 137566-134370 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAGT010000004.1 Cloacibacillus porcorum strain 105753 Contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 137565 30 100.0 36 .............................. TGTCTCCGGTTCGTGCAAAGGGACGGACAATTCCCG 137499 30 100.0 36 .............................. GCAAAACCGGAGCGGGGGAGGATCTGGCAAAAAAGG 137433 30 100.0 37 .............................. AACTTTCGACGCCGTTAGATTTTCCTGTGCTTATACC 137366 30 100.0 37 .............................. CAGGTCGCCATTGCAGACAGCGAAGCGACGGTGACTT 137299 30 100.0 37 .............................. GTGGTTGTAGCTCCCTCCAATATACCAACACGTACCC 137232 30 100.0 36 .............................. GCTTTCGATAGGCTTCGTCCGCAAGCGTATAGCTTT 137166 30 100.0 35 .............................. TTGATCTTACCAAGCTGCGAGTTGCTTTCCGGCGA 137101 30 100.0 37 .............................. GTGTGAAACTGTCTGGCATTTGCTCACCTCGATTCCA 137034 30 100.0 35 .............................. ACGCGCCTTATCATGTCGCCGCTGCGCGCGAACGG 136969 30 100.0 36 .............................. TGACACCAATTTCTCGCAGGTATGACACCAATTTCT 136903 30 100.0 37 .............................. AGGTCTGTGCGCCACGCGCGCAGTTCGCTAAGGTTGC 136836 30 100.0 34 .............................. CAGTCCGGGCGGTACAGGCGGACTGACAGTCCGG 136772 30 100.0 35 .............................. GCGATAGGACAGGTATTCCAATTACTGAGCTTCTG 136707 30 100.0 37 .............................. TGCTCTATGATGATCGCGTCGCTTGGATTGGTAAGCT 136640 30 100.0 35 .............................. TATTTTGACTCTTTTTGCAAAGCAATTATATGAAA 136575 30 100.0 38 .............................. TCTGGAGGTACGCACATGGGCAGGCATAAAAACCGCCT 136507 30 100.0 36 .............................. CCGAGGAGAGCTATGTGATAATGGACGAGAGCAGTT 136441 30 100.0 37 .............................. TACGCTTCCAGAACTTCTTTCGCGTACTTAAGCGCGT 136374 30 100.0 36 .............................. TCGATGACAGGATGTCTTTTAAGGTACCCCCGGCTG 136308 30 100.0 35 .............................. TCTGCCGCCTTGAGTCTCCGCGAAGCGGCAGCGTT 136243 30 100.0 38 .............................. TATCAAAAACGACATGCCGTTCGAGAGCGCATGGAACC 136175 30 100.0 35 .............................. GCCTCGGACATATACCCCCAGGCCAGCGGCAGCAT 136110 30 100.0 36 .............................. TCTTCAATTTCTTTCTTTGGGCGTTCAGCATTTCTC 136044 30 100.0 36 .............................. AAATCTCATTGACGCATTCGTACAGAGGGTCGATGT 135978 30 100.0 35 .............................. AAGCGTCTTCGATGAGTTTATAGGCGTTGACGCTC 135913 30 100.0 35 .............................. GACGCTACGGTGGACCGTTATTTATACAAGAAGAT 135848 30 100.0 35 .............................. TAGTTTCCCTCTCTGACAGCGATCTCGTCTTCCGT 135783 30 100.0 37 .............................. GCCTTAAAACCTCTTCCGGCTCCATCTGGAGCTCGTC 135716 30 100.0 35 .............................. GGGCGATTCGGAGTATGTTTGCCGGCAGCAGTGCC 135651 30 100.0 36 .............................. GTATGAAACGATTGAAAACCTGCAAACAAATGTCAG 135585 30 100.0 35 .............................. ATTGCTGTTTTATATTTGCTGTATAAACACTGGGA 135520 30 100.0 36 .............................. AAGCCTCAGTCTCGGTATCAAACACGGCAACGTAAC 135454 30 100.0 35 .............................. TTGTGACGCTCAGAACGTAGCTAACGCCGTACGGC 135389 30 100.0 35 .............................. TGAACGGCAAAGAAATAGCGGCTATGGCGGAAGAG 135324 30 100.0 35 .............................. TGGCACGCTGGCAAATATAAACGGAGTGCTTGACC 135259 30 100.0 36 .............................. TGGAGCCGGTGTTTCGCAGCGGCGGGATTGGCACGT 135193 30 100.0 38 .............................. TATTGCAAAAGACAAAAAGATACTCGTCTCCACACAAA 135125 30 100.0 35 .............................. CCGCGTCTGTGCAGCCCATATAGCAGCCGTACTCC 135060 30 100.0 36 .............................. AAGCATCTTACAGCGCCTCCCGCGCCGCGCTGCTCG 134994 30 100.0 35 .............................. TCGTACCCCCCTCGGAGGTCACAGCCTGCCGCGAG 134929 30 100.0 35 .............................. GCTGTTGCCAATGTAGCCGCTACGCCGGCGACGGC 134864 30 100.0 37 .............................. CCGTACCGTCCGGCAGCGGTTTGTCAGGGTATAGCGC 134797 30 100.0 37 .............................. CAGGTAATCCAGGTGTCGCAAAGGTAGAAGACGGTCT 134730 30 100.0 36 .............................. AATAATGCGCTGTCGCGCCGCGCCGCCGCGACATAA 134664 30 100.0 37 .............................. AGGTCAACGTCTCCGAGGCGCGCGTCGGCACGGGACT 134597 30 100.0 36 .............................. TAGAGGAGCTGCGCAAATTTCAGTGCGAATCTAGGG 134531 30 100.0 37 .............................. GCGGAGGCAAGCGACGACTCTCTCCGCCTGTACATGC 134464 30 100.0 36 .............................. ACGGGCAGGATTTTTGTTGCCTAGCCTCTTTAGCTT 134398 29 86.7 0 .A......................A-...T | ========== ====== ====== ====== ============================== ====================================== ================== 49 30 99.7 36 GCTTAGAATCTTCCTGTAAGGATTGGAAAC # Left flank : ATATATAAACTGCAAAAACATATCATGGAAAATATAAAATATGTACCATATGCGAGCAGGTGGTAAGATGTTTGTTATTATGTTTTATGATGTCGGTGAAAAAAGGGTAAATAAAGTTTTGAAAACGGCAAGAAAGTATCTGACATGGATTCAAAACTCCGTGCTGGAAGGCGATCTGACTTCGGCAACACTTGAAGCGCTGAAGGCCGACGTAAAGAATATAATTGACCATGAATATGACAGCGTGCTGTTCTATGTTTGGAGAACGGAACGATACATGACACGGGACACTATTGGCATAAAACGTGGCAGCGTAGATTCTTTTATCTAAATACTGTTGACCTCCAATAGCGTAAAAACAGCGGGAGATCGACAGACTTTGTGAAACGATGATTTTTATTGCAGTATTCAGGGATATTTCGATTTTTCAATTTTAAAAATTGTGAATGATATTATGTCAACTGGTATTAGAAATACAGTTATAGTCCTGGTTTATACGG # Right flank : TACGATAATTATATTATGTATTTGAAAATTCATTTCGTATTTTGTTTTCAAAATTAGTCAGTAGTGGTACTCTCTAAAATAGACATAGAAATCTACAACTATAGTAGTCGGAGGTATGGGAATGCATATATCGCTGTACATTAATTCTCATGAATCGAAAATACTAAAATTACCATGTTCCAATTTACATTTTTTTCAATCGTTAGTATATAAGCTTCTTCCTCCTGATAGGGCAGCATTTCTCCATGATCAAGGTTATGTTATTGACAACCGCCCGTTAAAATTATTTGCGATGAGTTGGCCTATATCAGAAAAAGTTCCGAAGTTGGAAGATGGGCTAATTAAATTTGACTTGCCAATTCGCATAGTGATATCTACTCCGATAACGTCAACTATGGATGGCATTGCGAGCGGTGCGTTAATGAATGAATATATGCACATCGGATCAAATGTGGTGTTCTGTGAGAAAGTCGAGGTCAATTATTATAATTCCGTCTCTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTAGAATCTTCCTGTAAGGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 146987-145572 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAGT010000004.1 Cloacibacillus porcorum strain 105753 Contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 146986 29 100.0 36 ............................. CACATCACGGGCGCGAAAAAATGGACGGGTTGTGTC 146921 29 100.0 37 ............................. CATGTTCGTGCCGCGCCGGAAATGGCTGAGAATAGAC 146855 29 100.0 37 ............................. CGGGGAAGCCTGGGATTGTTACAATAGGCGAGTATCC 146789 29 100.0 38 ............................. TGACGCCAGGCTGTGGACGCTGCCGGACAGGGGCGAAA 146722 29 100.0 37 ............................. CGCCGGAATTGCTCTGCTGCCTTGCATCATATACATA 146656 29 100.0 38 ............................. CTTCGTTATGCTTCCGGGAGGTCAAACTTGTTGACAAA 146589 29 100.0 36 ............................. CGTAACAGCTATCTCATGCTTCGGCATCTCAGACAT 146524 29 100.0 37 ............................. CTAGTTGCCGATAAGCTCTTCTATATCAGCCAGCGAA 146458 29 100.0 38 ............................. CTCGTCACCGGCTCGGGTGCGGCGCCTGACGTACCCTC 146391 29 100.0 37 ............................. CAACGCAATATAAAGGATGCCTTCGGGACCTAAAGCA 146325 29 100.0 37 ............................. CGTATTAATCTGACTGATAAGGCAGGCCACATTCCAA 146259 29 100.0 37 ............................. CTCAACCATCACACCGGGGACGACCTCTGTAAAATTT 146193 29 96.6 37 .................T........... CTTCTCAATCGCCTTACGTGATCGCTGGACACGAATG 146127 29 96.6 37 .................T........... CTGGACATAAAAGCGGATGCGATGGACCTCTATTCCG 146061 29 100.0 37 ............................. GAACTTCGGTGCAATCCCTTCGCACTGTGAGATTTCA 145995 29 96.6 37 .................T........... GTACAGCGCGAAAACCCTCCGCATGGCATCAAAGCCG 145929 29 93.1 37 ....T............T........... GAATTTTAGAGTTTTCACCTATTTCACCTCCTGTTCC 145863 29 96.6 37 .................T........... GGTCGGACCGGGAAGCGTTACACGCTCCGGGCAATCG 145797 29 100.0 37 ............................. CAAGCTCATGAGCGAGGAGCGGGCGTTGAAAGAGATC 145731 29 100.0 38 ............................. CGCGGCGGTCTGAACGGTAAGATGATTCGGCACGACAT 145664 29 79.3 37 ...A....C.......CT...A..A.... GTATTCTTTCACCAGCGCCGTTGTCTTGGCGCTTATC 145598 27 82.8 0 ........C...T....T..-....-... | ========== ====== ====== ====== ============================= ====================================== ================== 22 29 97.3 37 GATTCAAATATTCCTTTCAGGTCTGGAAA # Left flank : TAAGAAAAATTCCCCTTGATGTTCTAGCCAATGTGGCAAAAGTATTGAAGTGCTCCGTTATGGATCTCGCCTATGAGGAGATGGGAATCGCCGTTGCTCCAGAAACAGAACGGCGGATAACCGATGGCAGACTCGCCGAACCGAAAGAGGGAGAGCTGATGTTCGCTGATCCGCTGGATAACGAAATAGTGGCTCTTCTAAAAGACCTGGACAAGATAGCGAAGGAAAAAGTGATCACATACATGAGAGACCAGAAGGTGATCACGGGATATTATCGGGCGGTGAGGGAGAGGGGATAGCTCTATTTTTGCTAATATAGTAATGCAGAAATTTCCGCGTCGACCTCCAATAGTGATAAAATACATGGAGATCGACAGACTTTGTGAAAAGGCAAATAAGCAGTAACAATCGTACCAATAGCGATTTGTGTTTCTTTTACGTTTGTTTATACTGATGTATACTGAACCTTGAAAACTGCTATTATACCTATACTTTTATGG # Right flank : GCAGTAAAAGTGATATCGTTACTCTAATATGGTGGGACCTGAATATCCATTTGAAATTTTGTGTAGTGAAAATTATAGACTGGTTGACATCAGTATGTAAAAATATTATCATCAAACCAGTATCTATAATTTACATTTTACAATTAGTCATGGCCCCATCTGTTACATACAAACTTGGAGGTGAAGGATATAGATTATCTATTCAAGCTCCGTGACCACTGGTGGTTTGACGCTGGAATAGCGGCGTTTTATGACATAGCTGAGAGGCTTAAGAAAAATGACGGACAGAGATGGCTGGATGTTAAATTAGGGATATGCCCCGATGGTATTCTTGTCTCTGCGCCCGATGAACTGCTGAAGCCGTTTGTAGATGCGTGCTATGAATATTTGGGCGATTTGTGGTGGAACGTTTCGTCGTCAAAGCAGGAGGAAGCGAAGGATCTTGTTATTTATAACAAGGAGAAAGAGACTTTCTCCTGTGCCCCTCGGCGTAATCCTAC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCAAATATTCCTTTCAGGTCTGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //