Array 1 291-30 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RJAO01000417.1 Mycobacterium tuberculosis strain 1585 contig00417, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                            	Insertion/Deletion
==========	======	======	======	====================================	===========================================	==================
       290	    36	 100.0	    43	....................................	TCGAAATCCAGCACCACATCCGCAGCTGCGGCATGCTCCCGAA	
       211	    36	 100.0	    36	....................................	GCGAGGAACCGTCCCACCTGGGCCTGCCCCCAGCGG       	
       139	    36	 100.0	    38	....................................	TCAATAACACTTTTTTTGAGCGTGGCGCGGTTGAGAGT     	
        65	    36	 100.0	     0	....................................	|                                          	
==========	======	======	======	====================================	===========================================	==================
         4	    36	 100.0	    39	GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC	                                           	       

# Left flank :   ATGAACCACCTGACATGACCCCATCCTTTCCAAGAACTGGAGTCTCCGGACATGCCGGGGCGGTTCAGAGAGGGGACGGAAACCTGCATCCGGAAAGTCCGTACGCTCGAAACGCTTCCAACG
# Right flank :  CACGGAAACGCAGCACCAGCCTGACAATTG

# Questionable array : NO	 Score: 5.86
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,12] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-6.40,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [21.7-43.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,1.01   Confidence: HIGH] 

# Array family : NA
//


Array 1 1-317 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RJAO01000427.1 Mycobacterium tuberculosis strain 1585 contig00427, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence            	Spacer_Sequence                                  	Insertion/Deletion
==========	======	======	======	===========================	=================================================	==================
         1	    21	  77.8	    45	------.....................	CCTCATGGTGGGACATGGACGAGCGCGACTATCGGGGTCGTCGGA    	
        67	    27	 100.0	    46	...........................	TGGACGCAGAATCGCACCGGGTGCGGGAGGTGCAGCAGTCGTCAGA   	
       140	    27	 100.0	    49	...........................	GCATATCGCCCGCCACACCACAGCCACGCTACTGCTCCATGTCCTCAGA	
       216	    27	 100.0	    48	...........................	ACACCGCCGATGACAGCTATGTCCGAGTGACATCCTCCCAGTCGTCAG 	
       291	    27	  85.2	     0	A..C.....A......A..........	|                                                	
==========	======	======	======	===========================	=================================================	==================
         5	    27	  92.6	    47	CCCAAAACCCCGAGAGGGGACGGAAAC	                                                 	       

# Left flank :   |
# Right flank :  TTGAACCGCCCTTCGCGCGGTG

# Questionable array : NO	 Score: 5.66
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:-0.02, 8:0.8, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CCCAAAACCCCGAGAGGGGACGGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [10,0] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-7.70,-6.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-4] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [0.0-11.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [1.15,0.27   Confidence: MEDIUM] 

# Array family : NA
//