Array 1 973904-975640 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051307.1 Salmonella enterica subsp. enterica serovar Reading strain CVM 35189 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 973904 29 100.0 32 ............................. GCGTGCAGCGTGTTTTAAAGGGGGTTTAATAG 973965 29 100.0 32 ............................. CCATCGCAGAAAACAAACCGGGTTTTATTGCG 974026 29 100.0 32 ............................. CCCGCCCGCACAGGGAGGCGGTAACAGCTCAA 974087 29 100.0 32 ............................. GAAACCGCCCGATTCAAAAAAACGGCCTTCTT 974148 29 100.0 32 ............................. GGCACGCTCAAACAAATTTTTGTTGGTTTCTC 974209 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 974270 29 100.0 32 ............................. GCCAGCCCAACACCAGCAATAGCAGCAGCTAC 974331 29 100.0 32 ............................. ATGAGGCCGCGATGCGCGGCTGGTCAGGTGAG 974392 29 100.0 32 ............................. TAGGTTTCTTCCTGAAGGCGAAGCATTTTCTT 974453 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 974514 29 100.0 32 ............................. CGGCGGGCTCGCTATCAGCCTTGCGGCGTTCC 974575 29 100.0 32 ............................. TTATTATAAGCGCACTCAGGCCGGAAAAGTTA 974636 29 100.0 32 ............................. GCTATTTAGCACCTTGCGGTGTTCTGCTATGC 974697 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 974758 29 100.0 32 ............................. AATTCCTCGATAGCGATCTGCACCAGGTTGAA 974819 29 100.0 32 ............................. TCTCAATGGGAAAAATCAAGTCAGATGCTTCA 974880 29 100.0 32 ............................. CGACGGTGGCTGAGTTAAAACAGGCCTGGAAA 974941 29 100.0 32 ............................. ATCGACGCTGGTCTGGTGTGGCGCGACGGACG 975002 29 100.0 32 ............................. AACGCTTTTATTTTTTATGACCCCCCAATTTG 975063 29 100.0 32 ............................. ACCGAGGTCGATCTGCTGTCTGACGTGCAGCA 975124 29 100.0 33 ............................. CACCCCATCATCTTCCGCAATCCACATTCCAGC 975186 29 100.0 32 ............................. ATTGAACCCGCCTACGCGCGGGTATTTTTTTC 975247 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 975308 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 975369 29 100.0 32 ............................. CGTTCGAACGCTACACCCTGGCAAGGGCAACT 975430 29 100.0 32 ............................. TCGCCCTTTCGTTTCGTGGGAATGTTCAACGC 975491 29 100.0 32 ............................. GTCTGCATCGCGTACAATGCGCCCGCATCGCC 975552 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 975613 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCAATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 991902-994110 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051307.1 Salmonella enterica subsp. enterica serovar Reading strain CVM 35189 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 991902 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 991963 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 992024 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 992085 29 100.0 32 ............................. AGGCTAACAGAAACATAGCTGATAGTTGGCGC 992146 29 100.0 32 ............................. TTTGCAGGACTGACCGTTACTGCCAGACCAGT 992207 29 100.0 32 ............................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 992268 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 992329 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 992390 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 992451 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 992512 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 992573 29 100.0 32 ............................. GCCCCTTATTACTCCGAAAATCCCAAAGATCA 992634 29 100.0 32 ............................. AAAAATCGGCTAACGAGGAAACGGCCTATAAC 992695 29 100.0 33 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTGC 992757 29 100.0 32 ............................. CCGTCGGTGTTGATTTTCAGCTCTTTAGCTTT 992818 29 100.0 32 ............................. GAAATATTTGCATGGATAGTTGCGCTTTATAT 992879 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 992941 29 100.0 32 ............................. CGTCAGAAAAACGGTTTATGCCGCCAGCCTGA 993002 29 100.0 32 ............................. TGATATCCCTCTGGTGATAGGCGTTGAGGTAG 993063 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 993124 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 993185 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 993246 29 100.0 33 ............................. ATTTAAACCACATTGAAACGGCTATTTACTGGC 993308 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 993410 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 993471 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 993532 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 993593 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 993654 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 993715 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 993776 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 993837 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 993898 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 993959 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 994020 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 994081 29 96.6 0 ............T................ | A [994108] ========== ====== ====== ====== ============================= ========================================================================= ================== 36 29 99.9 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //