Array 1 206144-207224 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014673.1 Thermoclostridium stercorarium subsp. leptospartum DSM 9219 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 206144 30 100.0 37 .............................. AATAACAACTCAACTTAGTAAAGAGCCTAAGGATACT 206211 30 100.0 36 .............................. TCATCAGGGTTATCGGAATTTGCGCCCTCATGCATC 206277 30 100.0 35 .............................. TTTTTGAGGATCAACATTGTTGTTTCGTTCTTTGC 206342 30 100.0 34 .............................. GATGCCGACGATGTACTGTGAAAGGTTTTCATCA 206406 30 100.0 35 .............................. CCTCTTCATCGTAGTCAACCTGTGAAATGACAAAG 206471 30 100.0 35 .............................. GTATTTAACGCAGCCGATGCAGTAGGTGATTGAAC 206536 30 100.0 36 .............................. CTGGGCCTCGGCTAATTTCTCATTTGCCTTGCGTAG 206602 30 100.0 36 .............................. CATGAAATTTTTATTGTAGTTGTTAACCCTGCTTTC 206668 30 100.0 36 .............................. TTCTTCATACTCTTCTTCTGTGAGTGAATCAAAATA 206734 30 100.0 35 .............................. GCTTTTGAAAGCGCTAAAAAGAAAGGATATTCTGC 206799 30 100.0 36 .............................. TCTAATGCAATTACATATACTAACAATTGGCTTTAA 206865 30 100.0 35 .............................. TTGGTTAAATCCCTGATAATTTTACCAACTTTTGA 206930 30 100.0 36 .............................. TTTTTCAACTTATGAACACATTCGTTTAACATAAAC 206996 30 100.0 37 .............................. TGACAGCTCATGTTCTGCTTCCACGATGCCGACAATG 207063 30 100.0 36 .............................. GGTATCACCCCAGAAAATGAGAACGCTTCCCGGTGT 207129 30 100.0 36 .............................. TCATTAGGCTCCATAGTCTCAAGTTCTTTCTGCATG 207195 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 100.0 36 GTTTGAAGTTTACCTATAAGGAATTGAAAC # Left flank : AGTTCAGAGTGGAAGGTAAGATGTGGCATCTGAGGACTTTGTGAAATTTTACTTGGTGGAAGAAATATTAATATGATATAGAAAATTATAGAATCTAAAGAGACAGCAGAAAATGAGGCAATAGATGGGGTTGATATCAAACTGCACAAAACAGTTTTTTAACTAATAAAAAGGTAGTTTTTAAGTTAAAACGTTATTGATAGTTATCACCTCCCTTTTTAGATACAAACAATTTAGGAAAAATATTACAGAAAATATTGTGAATAAACAAAATAAAATACAGCAATATATGTATTACTGCCTAAAAGGCAGCCGTTGCAATTTGATAGAATATATGGTAATATTTATCCTAAATAAATCTGTCGATGTCCAGTAGCTTAAAAACCACCGGGGATCGACAGATCTAAAAATCGGGCAATATCAACTATTTGCGGATTTTAATACTCAAAAATTTAAAAATTGTGATTTTATAAAAACGGCTTTTTATGCGGGTTTTACGG # Right flank : CAAATTCATGAAAAGTCGCCTTTTATAATGCCCCCCATTGTCAAGACAATTTTTTAGCTTTTCTAAGTTAGGTTCTCCTTTCTTAAAATTTGTATATTTTAACATTTATGCACTCTATTGGGGGATGTCAAGGGCGAGCGTAAGCGAGTTCATCTTGACCCTTGACATCCAATAGGCATACATCCTTTTGCTTTCCGGTCTGTTATGACAGACCGGCTGCCTTCCGGCGAGGACGGGGTTTGGGGCAGAGCCCCAAGGTTTTATACGACTGCCGGAAGTTGCTTACAACCCCCGAAGTAATACTCTGCCGGTGTTTTGTAATCCAACGACTGGTGAGGTCTCCGGTTGTTATAATACTCCACATATTCCCTTGTAATCTGCCGGAGCTGATGTCCTGTTTCGCAATCTTCAAGATAAAGCTTTTCCCATTTGTAGGATCGGAAGAAACGCTCTATCCGTTGGTTATCCAATGCTCTTCCTTTGCCATCCATAGATATTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAAGTTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 791511-792951 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014673.1 Thermoclostridium stercorarium subsp. leptospartum DSM 9219 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================================================ ================== 791511 30 100.0 36 .............................. GTGTTCTGTGTCTCATTTTTGAACGCAAAACACAAG 791577 30 100.0 35 .............................. ATGGTAATTATAGGAATAATATTCCCATCTAATAT 791642 30 100.0 35 .............................. GCGGTACAATGAGCCCTACATTACCATCATCAGGG 791707 30 100.0 35 .............................. GAGGAAAGATGGTTTTTGTATGGGCTTGCCAATGC 791772 30 100.0 35 .............................. TCTGACTTCAAAGTTTTGATTTGAAAGTCTTTACG 791837 30 100.0 33 .............................. GAATTCATAAATGTAATCAGGGCTTCCGTTTGT 791900 30 100.0 36 .............................. CTGAGAAAAATGCTTTTCTATTCCAAGCTTTTCATG 791966 30 100.0 35 .............................. ACAGGAGTCTAGTTTTTCTCCGTCTTTTTCTAAAA 792031 30 100.0 36 .............................. TTTTTGAGGACTTACCTTTTAAGGTAGGTCCTCTAT 792097 30 100.0 36 .............................. TTACATGTTGCTCATACAGTGGAACAGGTACCGTAA 792163 30 100.0 33 .............................. CTTTAGCGTCAAACATTACATATATCCCTCTAC 792226 30 100.0 35 .............................. CGAACACCAGGACCACAGCAAAGCGGTGCGTGATG 792291 30 100.0 36 .............................. TCATGATGGAATCACCAACTGTTGTCCAGGGTAAAT 792357 30 100.0 36 .............................. AAAGTGTTGATAAAGTGGATACAGCGATTGCAATTG 792423 30 100.0 36 .............................. TCATAGACCCCTGCACTATGTTGAAACTTCGGGCGA 792489 30 100.0 34 .............................. CCTCGACATTGGATATAGGCCCAAATTCACAAGA 792553 30 100.0 35 .............................. ATGATCGTTGTGGAAAACGAATACTTCGTTTCCAC 792618 30 100.0 144 .............................. TATTTTCATTGTGGGAAACCTTCACATCGAAGGTATTTCATACAATTTATATTGAAAAGGATAAAACTAATGGTATAATTTAAATAAACGTTTTGTCTGTCGATGTCTAATGAGTGTTAAATTGACTTTATGAGGATTTTACGG 792792 30 83.3 35 A...GG...A.......G............ TATAGCTCTTTTAACTTTTTGACGCCCTTATTATC 792857 30 93.3 35 A...T......................... GAATATGTATAGCCCTTGTTGTTACCACACTCTTC 792922 30 76.7 0 .A......CC.T...G.G.......A.... | ========== ====== ====== ====== ============================== ================================================================================================================================================ ================== 21 30 97.8 41 GTTTAAAGTTTACCTATAAGGAATTGAAAC # Left flank : TTTGCAATAATCCTTTCTATAGCTTCAGGTGAAAATACGTTCTTCTCAAGATGTTCAATAACGAGGTTCTCTATATATTTTTATTGATAATCTTCATGACGCATTCTTTTGTTCTTTTTCTATTAGAGCATTCATACGTCACATAAAAGTTTTATTTCTACCAGTGGACAAGCTGCAGTTTCCTCGCGTCAGAATAAACCCACAAAGCCGGGCATTATGACAGGAACGGCAAGGGAAAAAAAGTAACTGACAGCTCTAAAATTAAATCCTTCCTGTAGCGCTACCCCGGCTTCGTTCTGGGTTATTAATTTAATTTGCAAATTGGTAAAATATATGGTAATATTTATCAATAAATAATTCTGTCGATCTCCGGTAGCTTAAAAACCCCCGGGGATCGACAGATGTAAAAATCGAGCAATATCAGCTATTTGCGGATTTTAATACTTAAAAACATGAAAGTTATGATTTTATAAAAGCGGCTTTTTACGAGGGTTTTACGG # Right flank : CCCGTCAAGCCGTATGTTTCCACCTGTTGTGGCGCTTTTGTCTACCTATAAGGATTTTTCTCGTCTATAACCGAACGGATGTTTGTTATAATATCTATGGGTGAATTCTATGAAAGCTCTCATGCAACCCGTAGACATGATAAGCTGCACTTTAACGAAGTGGAGAGCTCCGCAGACTGTCAGGTTCATGGCAAAAGGTAAAGACGGTAAAAAGAACGAGAGTTTGAAGTCACGTTGAGTTGAATTCATGCAAAGGAGAAATGGCTGAAAATCATCGAGCATACGGTAACGGCTGTATGCAAACGGTATATTTGATTTTTAATTTTAAGAGACGGGATTTATGTGACATGAAAACATTTTACAGTATGAGTTTGGAGACATCTGAAAAATAAAAAAATTAAAGAATAAAAGATGATTTTATCTTTTTTTGTAGAAATAAAACACTAATTGTAGAAATAAAACATTAATAATATGTGCCAAAGGGGGATACTATGGATTTA # Questionable array : NO Score: 8.64 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:-0.50, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAGTTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 3 1524947-1524787 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014673.1 Thermoclostridium stercorarium subsp. leptospartum DSM 9219 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 1524946 28 100.0 38 ............................ TACATAAATCTTACAGCCCAATACCACCGGGTGTTTTC 1524880 28 100.0 38 ............................ TGTTGTAGTCAGCTGTATGGCATTTCGTAATGGTTGGA 1524814 28 96.4 0 .....................G...... | ========== ====== ====== ====== ============================ ====================================== ================== 3 28 98.8 38 TTTTAATCTAACCATAATGGAATGTAAA # Left flank : TTGAATACAACAGAAAAGGTCTTCTGTCTGAGGACAAGACGTATAAAAAACCTGCATTCTATGTAATGAAGGAATTTTATGCTTCTATAAAAGATTAAACGAAAGGAACAGATATACAGCTACATTATTTTAACGTAGGGCAGCATTGAAGCGTGATTTTGTGGCTTGTACCGAATTTAGAGACATGCCGGAAAAAATCAGAATGGAACATATGGCTTTTGAATCCGGGCAGGCGCTGCAGACAGGTGCCTGCCTTTTTAAATTTTACGTTTTGTCTTAAATGAATTTGCAAATTTATTTATTGTTCATTAGAATATAGATTAAGAGGAATATTTACATAAAAACATCCGTATGGCTTAAAAATCGAGTTACTTTATTGTCTGTCGATCCTGAGTAACGGAAAATATACGGGGGATCGACAGATGTATCGGACTTTGAAAAATGAATAATCTATTTAAATTGTATAATACATAAGATGTAATATTTTTTTTAATCTTAAC # Right flank : CCCAACTTACGGGGAGTGGAAACGAAAGAACCTCTGCCGGAGGTTCTTTTTCATTTGTCATAAAAGCTGTGGTATAAAACATGGTGTAAAGGCAGGCGTGGCAATGTGCTTGCCTTTTTTATTCCTTTTGGTGAACAGGTAATATTTTTTAGGTTTATGAATAATCTTTTTTAACCGGCCATATATAAACAATGGAAAAAACTTTGGAGAAGTTTTATGATAGTTATCCGAAGAAGGACAATAGCAATATTTTTTGTGTCTTTGGTGTTATGCCTTATGATGTTTTTAACGGTAAACGGGAAAATTATAGAAGTCAGCGCCCCGGTAAGAGAAATACCAATTTACAGTGTTGAAAACAGCGAAGGAAAGGTATCGATTACCTTTGATTGTGCATGGGGGGCTCAGGATATTCCTGAAATACTCAGAATTCTAAAGGAGAAAAACGTAAAGGCCACTTTCTTTGTTGTCGGGGAATGGGCAAGGAGAAACCCTGAAGAAAC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTAATCTAACCATAATGGAATGTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 4 1829717-1828244 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014673.1 Thermoclostridium stercorarium subsp. leptospartum DSM 9219 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1829716 30 100.0 36 .............................. TTAAGTAAGAAATCAGCATAACACGGAGAAAGCGAG 1829650 30 100.0 37 .............................. ACAATGTAACTCCTGTTATTGTGTCAACAACCGGCGG 1829583 30 100.0 35 .............................. AATGCTTTTTATTATTGAATATGCTTCATTCAATA 1829518 30 100.0 36 .............................. TAAAGCAAAACATGAAAAATTTATGAGAATAAAATC 1829452 30 100.0 35 .............................. GAGAGAAATCATGTGGTACTCCAACATGGGCTACC 1829387 30 100.0 35 .............................. TGAGATGGGTTGGGATATGTTATGAAACACCAATT 1829322 30 100.0 35 .............................. GAAGCAAGGAAACAATTAGCAGATGAAGTTTATTG 1829257 30 100.0 36 .............................. AAAGAGGTGGGAGTCTTCTTGCTACTTTCTTAGATA 1829191 30 100.0 35 .............................. TCCAGAAGTCTTATATCAAAGTTCAACTGATCTGG 1829126 30 100.0 35 .............................. CAGGCAAGCGGGATGCAAGCCTGGCAGCAGATACG 1829061 30 100.0 36 .............................. TTTTGTGACCAGCCAGGACATTGTCCGGCCGGTTTC 1828995 30 100.0 36 .............................. ATAAAATCTATTTGCGGTGTTATATATGCTATATTA 1828929 30 100.0 37 .............................. CCGGATCGTGGCTTACATGGTTGCACGTTTCAGATGT 1828862 30 100.0 37 .............................. CTTTTTTTTATGCAATTATACTGGACTGATTAATTAG 1828795 30 100.0 36 .............................. TAGATCCTCCCAGCGTCCAAGCGACGGATAATATGA 1828729 30 100.0 35 .............................. TTATCCTGGAGCAGAAATAATTGACTTTAAAAAAG 1828664 30 100.0 34 .............................. ATAGTTGGATATTCAACGTTGAATGCCTTTATCC 1828600 30 100.0 36 .............................. ATGAACTTGGGTACCGGTAGGCGGGAGGCCCGGGGC 1828534 30 100.0 36 .............................. TATGAGGAAAAAAACAGACTTTTATCGGATATCATT 1828468 30 100.0 35 .............................. TCTTCTATCACGTGTATTTCTTCAATGTAACCGTC 1828403 30 100.0 35 .............................. AAGCTGAAGAAGCTATTAAGGCAGCCGGGTTACAT 1828338 30 96.7 35 ......................G....... TCTTTGGTGGGATTAAGCTTAAAAATTCTAATTAA 1828273 29 80.0 0 ..........TC.....G...T.-.....A | G [1828257] ========== ====== ====== ====== ============================== ===================================== ================== 23 30 99.0 36 CTTTGAATCTAACCATATTGGAATGTAAAT # Left flank : AGCCAGGTACCAAAGCATTATCAGGGAATGGTATCATCGATAATACGGACAATATTTGCCCAGAATGATCAGGAATCTGCGAGGGAACAGTTAAGGCATGTAGTAGATGAGCTTAAAAATCGTTTTCCAAAAGCAATGAAAATTCTTGAAGAAGCAGAAGAAGAAATCCTGGCATATATGGCTTTTCCCCGTGAGCATTGGGCACAGATACACTCCACCAATCCTCTTGAGAGACTTAACCGGGAAATTCGCCGTCGAACGGATGTTGTTTGCATATTTCCAAATCGTGAGGCGGTAATCCGATTGGTAGGAGCAATGCTCATGGAACAAAATGATGAATGGAAAGTAGGGCGGCGCTATTTCAGTCTGGAATCAATGTCAAAGATTACATCGATAAATGAATTTACATTGACACCAGTAGCTTTATTACATAAATGAGGTGAAAAAATGATAAAGTAGAAATCATTTTACACCACTTGACAAGACACTATCCTTTTTAA # Right flank : CATTTCGTTTTTAAGCCTCCCAAAGAACCCTTCACAAGCGGAATTATCTGCAGTACACCCTTTTTTGGACATTGACCTGATAAATCCTGCATTTTCCATCCTGGAAATCCAACCAGGCCATCTGTAGTGGCTACCCTCAGAGTGTACGATTGGATGCTCTGTATCTGAAAGACTGCTTATGGCTCCATCCAACATCGTATTGACTATCTCTGCATCCGGGCTGGTTCCTATTGCCCAGCAACGGCAGCTGCAGTCTCGTTTGTACAACTCTACTGCTTTCATTCTGTCCTCATATGAATACACATGGGGGCTCCTGCTCTATTTTAAGTCCAGGTTTTTGTCCGCACCCCCTTTGGGTCAAAATATTCCGGCGTTGACATTTGTTACACATTTTTCTACGTATTTAAGACTATAACGTAAATTCTCTGCAGGGTAGGGTAAATTACTGAACGTACATACTTTGAATTTAACCATAATGGAACTGTTTATGCCAATATTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAATCTAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 5 1840031-1831156 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014673.1 Thermoclostridium stercorarium subsp. leptospartum DSM 9219 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1840030 30 100.0 37 .............................. TCTTTATTTGTTGTCTCCTGAAGTTTTAACCATGCTG 1839963 30 100.0 36 .............................. GACAAAGGCTGAGCTCGACAAGGTCAGTAAAGAATT 1839897 30 100.0 34 .............................. AAGAAGCCTTGTTCAATAACGAGGCTTTTATTAT 1839833 30 100.0 36 .............................. CCGTCCTGGATGTATATACCTGCTTTTTCTGAAAGC 1839767 30 100.0 38 .............................. GCGTAACAGAGAAGAGCTGAACAGCTTAAGGGAATTCC 1839699 30 100.0 35 .............................. TTGACGACAAGGGAATAGGTATTGAATTACATTTC 1839634 30 100.0 37 .............................. CACAAATTCAGGCATACATGCTTTACAGAACTACTCC 1839567 30 100.0 35 .............................. ATCGCTCATGTCCACTGCTTCGTTCTGCTGAGTGG 1839502 30 100.0 36 .............................. CCGCACCATTTGACAAGGCAAAGGTGATTGTGGCGC 1839436 30 100.0 36 .............................. GCAAGTGATTGTAGTCCAGAAAGATGGGAAAATTGG 1839370 30 100.0 35 .............................. TGTATGAAGCGCAGCAGGTGGATATTTCGCAATAT 1839305 30 100.0 36 .............................. TTGCTCGCGGGGCATGTCCAAAGTTTTTGCAATTTC 1839239 30 100.0 36 .............................. TTTTTGTTGCTTGACTGGCAGCACCAGGTGCTATGG 1839173 30 100.0 35 .............................. TTTTTATGAGTATATTTATCGTTCATTAGATATAC 1839108 30 100.0 35 .............................. GAACTTTACTATCAATATCCTCAATACTCACCATT 1839043 30 100.0 34 .............................. TAAAGATACTGGCAAGCGGCGATTTGTTAGAGCA 1838979 30 100.0 35 .............................. TTTGAATATGATGATTTGACTGAAATTAGCAAAAC 1838914 30 100.0 36 .............................. ATTGAGTTCATCGAAAAATTCTGCCGGCACAGCAAA 1838848 30 100.0 34 .............................. CTGTTATTCTCGGCCGACAGGTTTTCCTCTGTGA 1838784 30 100.0 34 .............................. CTGTAATTTTCCCGCATCGCACTGCATCTGCAAC 1838720 30 100.0 34 .............................. AGAGGAAGCCCTGAAGGCCGCCGCCCTCATTGGC 1838656 30 100.0 35 .............................. ATCTAACTCTTGTCTAATAACATGATAGTCCTTCC 1838591 30 100.0 35 .............................. GTAGAAATGTTTGAGCAGGGTAAACAGAAAATGTT 1838526 30 100.0 35 .............................. AAGATAAATTCCGAAATTGAGCGCATGGGCTTCAG 1838461 30 100.0 34 .............................. GCATCTTTGGCAATTCAAGAATCGCTTTCATATC 1838397 30 100.0 37 .............................. TGATGGCAGCCCTCTTTTAACATGGTGCCTGTCAAAC 1838330 30 100.0 36 .............................. TAAAGCTCTTTTTTTTTATGCAACAGAATCCAAAGC 1838264 30 100.0 36 .............................. TTTTCATTTTCTGAATTCTATCACAAAACTCAATAA 1838198 30 100.0 36 .............................. GCATTTACCAAATCGGATAGATTCTTTTTCTTCTCA 1838132 30 100.0 35 .............................. ATGGATAGTTTTAATTCGCTTCCGCACTGTTCACA 1838067 30 100.0 38 .............................. ACAACCTCGGAAGATCCCTGGCAGCAAAGATCACTTCC 1837999 30 100.0 35 .............................. AGGGTGAAAACATTTCTTGGCAGACCCCCTCAATC 1837934 30 100.0 36 .............................. GCAACCCATCTCCAGTCGGATTTTTGTTCTTTTTTA 1837868 30 100.0 36 .............................. CAAGGAAGAAGGGCGTTGTCCTGTATCGCGACAAAA 1837802 30 100.0 36 .............................. CATCAGAAAAAACGCTAATCGAAGCAAGAAACAGAC 1837736 30 100.0 38 .............................. TCAGAAAAGGTCAGGTTTACTTGTCAAGCTATTATGAC 1837668 30 100.0 37 .............................. CCTTATGACCCGAGTCAGAAACGATATGAGGACATGC 1837601 30 100.0 35 .............................. TATACTTGGCTTGCCTGGTAGGCAATCCGGCGTAC 1837536 30 100.0 35 .............................. CGGTACAAATGAAATTGCTGTACCGGGGAAGCTGA 1837471 30 100.0 36 .............................. TTTTGTACAGTTTGTGCCTTATGCGCATTAAACTGC 1837405 30 100.0 35 .............................. ACTGACTGCAAAGGTTGATAAGGACCTCAATGCAG 1837340 30 100.0 36 .............................. AAATCAAAAAGAAGAAATAAGGGAGAGGTTGACCTC 1837274 30 100.0 35 .............................. TTCCTTCAGCTGGTCCGGGCTCCCGACCACTCTCC 1837209 30 100.0 35 .............................. GTATTCTGTAACTGCGTCATAATAGCTTGACAAGT 1837144 30 100.0 36 .............................. GCGTGTGAATTTGAATGGCTGGCGTGTGAGCGGCAT 1837078 30 100.0 35 .............................. TAATTCAACTGCCGCGTTCAATTCTTCTTTGCTGT 1837013 30 100.0 35 .............................. TGCTTTTTTCAGCATTTTTCTTTCGGCTTCCTCAC 1836948 30 100.0 34 .............................. TTCTAAGGGCTGACCCTAAAACACGGTATGAAGC 1836884 30 100.0 36 .............................. TATTAATACTCCTTTCCAAAATAAAAAGCGCTAATT 1836818 30 100.0 33 .............................. TTCTAAGGGCTGACCCTAAAACACGGTATGAAG 1836755 30 100.0 35 .............................. GCTTTTGCGACAATCATAAAATTAATTTCTGCCCT 1836690 30 100.0 36 .............................. ACTATCGAGGAAGCAACAGAAGAGCCCGAGGAAGAA 1836624 30 100.0 35 .............................. TTAAGTTTGTGGGGATGATATGGTATCATTGGTCT 1836559 30 100.0 35 .............................. AAGAGTGCAAGGAAAAGGGTTTTGCAGACGAAATT 1836494 30 100.0 36 .............................. GCAAGCGACACTTGAAATGGTATTGAACTGGCACAG 1836428 30 100.0 36 .............................. GAAGAACATCCTGGCCGCCCAGAGCGTCAAAGAACA 1836362 30 100.0 35 .............................. TGGCTTCTGGGGGGTGTGTTCATAACATGAAGAAA 1836297 30 100.0 36 .............................. TTTTTCAGCATCCTTTTTCTTCTCAAAACCTTGTTT 1836231 30 100.0 36 .............................. CTTTAAATTTAGTAGCATTTATTTTATCGATTCTAC 1836165 30 100.0 35 .............................. TTGTAGAGGTTGGAGTAAACATCCCCAACGCAACA 1836100 30 100.0 35 .............................. CTACCATTCAGTGGTCGTGATGACGGCCTTCATAC 1836035 30 100.0 38 .............................. ATCGTTCTCAAAATCCCACATTACATTTCTTTTTATAA 1835967 30 100.0 35 .............................. GCGGATGAGAAAAATTGAGCGGCTTTTTGACCAGA 1835902 30 100.0 35 .............................. CCGTGCTGAAGAAAGTGACTTTCTGACGGGGCGGA 1835837 30 100.0 35 .............................. TAGAAAGAGCATTAACTACAGCTAAAGCTAAAAAC 1835772 30 100.0 36 .............................. GAGCTTTCTCAGCGCTGCCCAACATGGTTGTAAAAC 1835706 30 100.0 35 .............................. AACTGCACAGATTGGTTTTACAACCATGTTGGGCA 1835641 30 100.0 37 .............................. AAGTTTTTGCAAGTTCTACTGCTGACATGATATCTTC 1835574 30 100.0 37 .............................. GCGGACTAAAAAATGCTAACCGTGTGGCGCTCTTGCC 1835507 30 100.0 36 .............................. ATGTTCATAGGAAACGGTAAGGAATTCGCTGTACTG 1835441 30 100.0 34 .............................. CCATAGCACGTATTTGACTGTTCCTCGTGATTGG 1835377 30 100.0 36 .............................. TCTGAGAGGTAGGCTACGCTGTTGCGGGTGAACGTC 1835311 30 100.0 35 .............................. CTATGACGGCCGAGCCATAATCGAAGGCCAGCAAC 1835246 30 100.0 36 .............................. ATTTATACCGGGACTTTACGCCGCAGCGGTACCGTA 1835180 30 100.0 36 .............................. TGAGAAGGCAAAGTGAGGTGATGCCGATGTGTTAAA 1835114 30 100.0 36 .............................. ATAGGTGCGGTATTGGTTGATATACTTGCAATAGCG 1835048 30 100.0 34 .............................. ATACAGCAGACAGGCAGACAGTCTGAAAGCAACA 1834984 30 100.0 36 .............................. TTTGATGCGCTTAATAATAGGATTTTTAGAATCAGG 1834918 30 100.0 35 .............................. ATCTGATCACACCCGGTGCCGTGCAAAGCGAGTCA 1834853 30 100.0 36 .............................. AGGTTTTCGTTAAGATATGGCACTCAAAAGATTTTA 1834787 30 100.0 36 .............................. GAACTACGAAACTAGGATATTCATTAGCGTTAGCGG 1834721 30 100.0 37 .............................. GAACGACAAGGATGTCTATGTGTTGCGCGTCCGCATC 1834654 30 100.0 33 .............................. AGCCGCTCTGCTTCTGTCGGCGGCGGCCAGGGC 1834591 30 100.0 36 .............................. TTGCTTCTGTAAATGCTATATCCCCTTTGCCTCCAA 1834525 30 100.0 36 .............................. GGAGATTTGGTTGTTGCACCTGAGCGATGGCAATAG 1834459 30 100.0 35 .............................. TTCGCTGGCCTCGTCGTATTCATTGTAGGTTCTTA 1834394 30 100.0 35 .............................. TTTCAAACCCTTCCGAAACCCTTTCAAAACCCTAT 1834329 30 100.0 34 .............................. ATATGCAAGGAAACAGTAGATTATACAGGTATAG 1834265 30 100.0 34 .............................. CTTCCACGCCCTCTGGGGTAGCGCTGTAATCAAT 1834201 30 100.0 36 .............................. TTCAAATTCACACGCCGGACGCATCCCTGCCACAAC 1834135 30 100.0 37 .............................. CGACCTGATGATGTAGGGGTAGGGAGAAAACATCTCC 1834068 30 100.0 36 .............................. TAATTTAGTTATCCATGTTTCATAATTAGTCCATCC 1834002 30 100.0 36 .............................. GCTTGATAGTATTCATTACATAATTGATATTATATA 1833936 30 100.0 35 .............................. ACGAAAAAGGGCTCTTTATTTATGCGGATTTATCC 1833871 30 100.0 35 .............................. TCGTTCTGAGACAAGCAAGAGCAAACGCACCATAT 1833806 30 100.0 37 .............................. TGTATCATTTTTTATTTGTAATTTAACATTTTATGAC 1833739 30 100.0 34 .............................. TTGAATCAACGAAAGCCTGCCCTGTCCAGCTTGC 1833675 30 100.0 37 .............................. TTCATCACGATAGGGGAATACATTTTTGAGACGGAAC 1833608 30 100.0 34 .............................. GAAGAATATATTGACCTTTTGAAATTAATGGTGG 1833544 30 100.0 36 .............................. TTATCAGAGAATCAACAGAATATAAAACTTTTGAAG 1833478 30 100.0 34 .............................. AATGTATTAAAAATTGCACTTGACGTTATTAAAG 1833414 30 100.0 37 .............................. ACTCTTGTATATTTGCCAGTTTCTACTACATCGTAAT 1833347 30 100.0 34 .............................. ATTAAATATAGAGAAATAAGAAATACTAGACTAA 1833283 30 100.0 36 .............................. CATCAACAAGCGGGAATATCTATGATTACAAGAAAT 1833217 30 100.0 38 .............................. ATGAACAGCTAAGCGCTTATACGCATGCAGTATTGAGG 1833149 30 100.0 37 .............................. AAACTTGTGTATGCTTTTGAAAGAAGAGCTCGACAAC 1833082 30 100.0 36 .............................. CCTGTGCCGCCGATGCACCCTACGAGCATAAAATGC 1833016 30 100.0 35 .............................. GAAATAAAGGGAAGGAATTTATTTGGATTAATTAT 1832951 30 100.0 35 .............................. AAATATAATGCACCATAACTTACACCCGGTATAGG 1832886 30 100.0 36 .............................. ATCACAGCACCCACCATAAAAATACCAAAAGACAAA 1832820 30 100.0 36 .............................. ACAAACCTCTCAATTAAACTCATTAAACTATCCATC 1832754 30 100.0 37 .............................. ATGAGAAAACCGTGCATGTGCCATGATACACCATCAC 1832687 30 100.0 36 .............................. ATGCCGAATATGAGGCACTCGTGGCGAAACTCGGCG 1832621 30 100.0 37 .............................. TTGAAATTGAGCTGACAACTTTCAAAAAGGAAATTTC 1832554 30 100.0 35 .............................. AAATTCTTCCCACGTAGCACTTAATTTATCAAGTT 1832489 30 100.0 35 .............................. AAGTTCTCCGTCTATACCGGATGGTGAGGGAAATG 1832424 30 100.0 35 .............................. AAAAATTTGATTTTAGTTTTTTTCTGAGTGACAGA 1832359 30 100.0 34 .............................. GCATCGTATATCGCCTCCTTTGTACTCCAGCAAA 1832295 30 100.0 35 .............................. ATAATGCTCTTCTCAAAGAAATAAATGACTTTATC 1832230 30 100.0 35 .............................. ATACTAGATAGGAAGCATAGGGTATACTGTACTAG 1832165 30 100.0 36 .............................. AAAGAGAAACCAGAAGAAAGACAATGAGACAACTTC 1832099 30 100.0 35 .............................. GTAGGAAATTCTCTACGTGCACCGCTATCTTTAAT 1832034 30 100.0 36 .............................. AGACCGGGAGATTTTCTCCCGCTCCGCTCAACCTGC 1831968 30 100.0 35 .............................. TAAGTTAACGGAAATTTTGAAATAATCATTTTTAT 1831903 30 100.0 36 .............................. TTTTAAAATCTTATTTTTCATAATAAACACCAATTA 1831837 30 100.0 36 .............................. TTTCTTCTCAATGAGCGTATGAAAAAGCGGTTTATA 1831771 30 100.0 35 .............................. AATTCTGATATTATTAGCGATTTTATAGAAAATAA 1831706 30 100.0 35 .............................. TAACCAAATATGCTATAGATTCCCTAATCCTCTTC 1831641 30 100.0 35 .............................. AAATTCTTTAACATTGTATAAGTCGCAAATAATTG 1831576 30 100.0 36 .............................. TAACGCCCCACATTAGCATTTACCGTCCTCATAAAC 1831510 30 100.0 36 .............................. TCATTTTCACATCTATAATAGCACATTATCAACAAA 1831444 30 100.0 34 .............................. CTAACAACCGATGAAATTTATTACCTTGATCAAG 1831380 30 100.0 35 .............................. GAGTTTAACGGAGATAAAAGAGAATTTGAACTTAG 1831315 30 100.0 35 .............................. CTTTTCCATGGTGCGACATTTCGGCAGCCTTCGGC 1831250 30 100.0 35 .............................. ATTAAAGAATTGTAAAAATCGCTCCTTACCGGAAC 1831185 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 136 30 100.0 36 CTTTGAATCTAACCATATTGGAATGTAAAT # Left flank : TTCAAAGAATGTAAAAAATACCTTGTACATGTTCAAAATTCAGTATTTGAGGGTGAATTATCGGAATCTCAGCTTTTTAAATTGGAAATGTCTTTAAAAAAACTTTTGAGAAAAGACAAAGATTCATTAATTGTATTCAAAACCAGGAACGAGAAATGGCTGGATAAAGAGTTTTGGGGAAAAGAAGATAATGCAACTTCAAATTTCTTATGACTTTTGTTTTTTCTCGTGAGAAAATGAGAAGTCTTAATGGCATCTACAGCAAAACTCGTGAGGATACCACCGTAGTTCTGAGTTTGACGAAGAAATAATTTCAGACTTGATCTGTCGATCATGAGTAGCATAAAATATATAGGGGATCGACAGACGTATCGGACTTTGAAAAATGAATAATTTTAAAAAATTTATATAGCTGTATGTAATACATATTTTTTTAACCTTATATCATAGACAGAAACTGTACTTAAAAGATATGAAATTCAAGTATTATAATTAATCGC # Right flank : AAAATTCAACTATTTCCTTCTTTGTTACCTTTTTAAGTTATAGTCTCAAGTAGTGGTGTAAATTTCGTGGAGGCTAATTGACAAAAGTAACCACGATATGATTTCTACTTTATTAGGGAAACAAAACAAAACAAATAAAGTAGAGGAGGTCATACCGTGGCTACTAATAATAGAATGGCACTTTTAGAACAACTTAGCAAGTATGTTGTTGAAAAAGATAAAGATTTTTTAAAAGAAGCATTAACATTACTCATTAATGCCCTAATGGATGCGGAAGTTACATCAATAATAGGTGCTGAAAAGTATGAAAGAAATAATAATAGAAACAACTATCGCAATGGATATCGTCTAAGAGAATGGGATACTCGAGTAGGAACATTACAGTTAAGCATTCCCAAGTTACGTCACGGAAGTTATTTTCCAAGTCTTTTAGAACCGAGGAAAATGTCAGAGAAAGCATTATTGAATGTAGTTCAGGAAGCCTATGTTCATGGAGTAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAATCTAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //