Array 1 6566-8096 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNKQ01000062.1 Yersinia pseudotuberculosis strain LFB2015W0M66/I75 NODE_62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6566 28 100.0 32 ............................ CTGTGATAGCAATCCGTTGACTATAACGTCAG 6626 28 100.0 32 ............................ AAGGGTTCATTGGCAGAAGCACTTGCATTACA 6686 28 100.0 32 ............................ CAAGAAAAGACACGCCAAATATCTGAGCAGTA 6746 28 100.0 32 ............................ ACAGCCAATCTACTTCCGTTCTCTGAGATTGA 6806 28 100.0 32 ............................ AGACGAAGAGCCACGCCAACGTAAACGTAAGA 6866 28 100.0 32 ............................ TATCTCAGATGGCGAGCCTGTATCGCACTCAT 6926 28 100.0 32 ............................ TAATCATGGATGAGGTTGGAATAAAACTATCA 6986 28 100.0 32 ............................ AAGTAAGGCACAGAAGGTTGTCACAATGACAA 7046 28 100.0 32 ............................ AACACTAAGGGATTATTACCAGATACAGGTGA 7106 28 100.0 32 ............................ AAATTATCTATAAACATAAACTGACTTTGAAT 7166 28 100.0 32 ............................ AATTCGGTATCGGTAAATTCATCAAGTATTTC 7226 28 100.0 32 ............................ TACAGCGGGCCAACTATTAGTAGATAGAGTTA 7286 28 100.0 32 ............................ CCAGATAAAAACCTGATCACCCTCATCATCAT 7346 28 100.0 32 ............................ ACTTTAAAGTCGAGAATGTTTTCCCCGCTCCT 7406 28 100.0 32 ............................ CATTGAAATAATGGTTACTGGTAACGGACAAG 7466 28 100.0 32 ............................ AGAATAATCAACGCCATTAGGGTTTAAAGGTA 7526 28 100.0 32 ............................ GCATTGCTTCAGATGCCGGTCAGGTTGTACGA 7586 28 100.0 32 ............................ CCCGTATTTTTGAGTGCCAGCTGCTTCCTGCA 7646 28 100.0 32 ............................ ATTTATCGCCTGACTTGACAATCATGACTTAA 7706 28 100.0 34 ............................ CCGATGGTCCGGCAATACCGATAACCACTTTTGA 7768 28 100.0 32 ............................ AACAACGCCGCAGACGCAACCAGTGCCAATAC 7828 28 100.0 32 ............................ CAAATGAGATTAAAGCATCAGTGCAGTACATG 7888 28 100.0 33 ............................ CCTGCCTGAATAGGGTGCATCAGCAAACCAAAT 7949 28 100.0 32 ............................ TCAAAAACCTGATGGCAGTGGCCCGGCAATAT 8009 28 100.0 32 ............................ TCAGGCTGGCGGCGAAATCACCACCTTTGCAT 8069 27 89.3 0 .....................CC.-... | T [8095] ========== ====== ====== ====== ============================ ================================== ================== 26 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 56678-58628 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNKQ01000013.1 Yersinia pseudotuberculosis strain LFB2015W0M66/I75 NODE_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 56678 28 100.0 32 ............................ TGCAAAGCCTCAAGCAATTCCGGTGAGGCTGC 56738 28 100.0 32 ............................ ATCTTCACTGCAGCTATAACGTATCCGTAGCA 56798 28 100.0 32 ............................ GGTCGACCAGCGCCGGGGACGTTTGGCGGAAG 56858 28 100.0 32 ............................ TGCGCCGGAATGGATAGGAATAACTCCTTAAC 56918 28 100.0 32 ............................ AGAGTCAGTTGTTAACTCACTGAATGGTGATG 56978 28 100.0 32 ............................ GCCAATAAGTGATAGCGCTCCCCTTGCCAATC 57038 28 100.0 32 ............................ TTACCGGCATCATACCGGGCATGTATTTCATG 57098 28 100.0 32 ............................ AAGCGTTAGCTTCCGGGGTTCTTCGCGGGGAA 57158 28 100.0 32 ............................ GTTAGAGCAATTACAAAGGCATTAATTATTGG 57218 28 100.0 32 ............................ TGTTCACCGTGACGCTTGGTAAGCCAGTCGAT 57278 28 100.0 32 ............................ AGTTCCATATCAACGGATTCACATAACGCTTC 57338 28 96.4 32 A........................... AGAATATCCTTACGGTTGGTGTTGATGTGCCA 57398 28 96.4 32 ...........A................ ATGAAGTCAACTGACCGACAAAGCCGGGCGGG 57458 28 100.0 33 ............................ ACTTGCAGCGCATGAAGTATGCAAGAGAATTAA 57519 28 100.0 32 ............................ GCATCTTGCAGCGGGAGGAGGGGAAGAAGAGT 57579 28 100.0 32 ............................ ATAGCCACCACTTAATTATCATCATCAATCAA 57639 28 100.0 32 ............................ TATCGTTGATGATATTGTGATGAACGGTGGTT 57699 28 100.0 33 ............................ GCGATAATATTTTCATTAAGTTTCGCTATCCGG 57760 28 100.0 32 ............................ ATCAACCACACCATCGGCTGTGTGATGCTTAA 57820 28 100.0 33 ............................ ATTATCTGAGTAGATATCTTTAGTAAGAATACA 57881 28 100.0 32 ............................ ATATGAGAAACGTTTCACAAGTGAAATAGCTA 57941 28 100.0 32 ............................ CTTGGAATACAGATTATTGCTGGTACTGTCAA 58001 28 100.0 32 ............................ TATGGTAAAGCCAACTTATCCAGACATACCAC 58061 28 100.0 32 ............................ TATTTCGGAGGTGCTAAATAATGGCTCGTTAT 58121 28 100.0 32 ............................ ATATTCATCCAGCGGGACCGCTGATGTTTATT 58181 28 100.0 32 ............................ GGATTGATCGGGTGATTCTTCATGCGGCATCT 58241 28 100.0 32 ............................ TACACCACCCCACAGTTGAACTCTCCGGAGAT 58301 28 100.0 32 ............................ ATATAGAGAGTTTAAAAACAGTTTACCTAACG 58361 28 100.0 32 ............................ TTGCGGTAATCGCTCCACGATGGGATTTTGAA 58421 28 100.0 32 ............................ AGACACGCTAATGACTTCTATTACTTTATTTT 58481 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 58541 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 58601 27 85.7 0 ...................-A.A.C... | T [58625] ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATTGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATCTTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //