Array 1 506418-505783 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBEF010000003.1 Clostridium botulinum strain DFPST003 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================== ================== 506417 28 96.4 37 ..............T............. ATTGGTTGTAAATACCTAATTTATTCCCAGAAGATAC 506352 28 100.0 38 ............................ GCATTAAATAAAACTATAAAAGAAGCAACAAAAATAAA 506286 28 100.0 37 ............................ GCTTTGATGAAAAGCAACTATACAAATGTAAACATAC 506221 28 100.0 40 ............................ GCGTATTTAATTAAATTAATTACCTATAAATGGATAATTC 506153 28 96.4 39 ..............T............. ACGTCTCTCCCAACAAAAGCACATAGCTTTAGTTAAGTC 506086 28 96.4 36 .....................G...... ATAGAATATTTAATATCCGAATATAAAGAAAACAAA 506022 28 85.7 118 ............A.T..A.....A.... GTAGTTTTCATACCATACATAAGCTTAAAACATTAAATATCTAATTATTTAATGAAACTCCTTCTCGTTCCCTCGAACGAGTAAGCGACTCACACCAAATCACAGATTTGGGTTCCCT 505876 28 89.3 38 GC.................C........ ACGTGAAAAATAATGTTGGATAATACAGCGAAAATAAG 505810 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================================================================================================== ================== 9 28 96.0 48 ATTTAAATACATCTCATGTTAATGTTCA # Left flank : CTGAAATAGAAGAACATCAAAAGAAATATTCAGAGGAAGTAAAAAATAAATATGAAAACACCTCTGCTTATAAGGAAAGTAATGAAAAAACTTCTAAATATACAAAAGAAGATTGGAATAATATAATGAAAGATTGGGATATTATTTATAAAAAACTAGCAAATCTTATGGACAAAAATCCAGATGATGAGGAAGTTCAAGAATATATTCACCAATTTAGGGAGCATATTTCAAAAAACTTTTATGATTGTACCCCTGAAATATTTAGGGGTCTTGGGGAACTTTATGTTAATGATGAAAGATTTACGAATAATATAGATAAATATACAGTTGGTCTTTCTAAATTTTTAAGGGAAGCTATTAATGTTTATTGTGACAATATAAAATAATAATTATATGCTATTTTAAATATTATCTAAAATAGCTAGTATTTATTACACAAAAATAAGGTGATTCAAAATAGATTTAATTTATTTTGAATCACCTTATTCTACATGCTG # Right flank : ATCATAGTAAAATAGCCATTTCTCAATTCTAAGAATAGCATATAGCCTTTAATTTTACAAGGTTTCAAAGAAATTTTTCCAACCGTTTGTCATTTTTTATAAAGACATAGATAAAGCTTATCTTAAGGCTTATATTTCAATACCTAGAATAGAATTTAAAATTAAATGTGGTTGGAAAATTCTTTTACTTATAATTAGATTAATTAGTTACTAAAATTAATTTTATTTTATTTTTAAAGGTATTCCACAGGTTACTAAATAAACCTCATCACTCAAAGAAGCTATAAATTTATTTATAATACCTTGAAAGTCTCTAAATATCCTACCTAATTTATAGGCTGGAACAATGCTATAACCTACTTCATTAGTAACTAATATTATGTTTTTATTTTCTTCTTTTACTGATATTATTAGATCATAAAACTCTTTTTTTATCCCCTCTAAAATTTCATCTAATTGTTCTTCTTTAATATTTTCATAATCTATTTTTTTATGAAACA # Questionable array : NO Score: 4.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.99, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATGTTCA # Alternate repeat : ATTTAAATACATCTTATGTTAATGTTCA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 524357-523932 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBEF010000001.1 Clostridium botulinum strain DFPST003 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 524356 30 80.0 34 TA.A..T..AT................... CATACAGAAAGATTATTTATAGTATCTTCTATGT 524292 30 100.0 36 .............................. GTTGTAGTTTGCTCATAAACAGTTACCATTTGTCCA 524226 30 96.7 37 ...............G.............. TTGCTTTTAATGCCAAAGCCATAGCTTTGTTACTATC 524159 30 93.3 36 ........A.......G............. GCAGTTTTCCCAAAAGCAACAATATTAAGAAATGCA 524093 30 93.3 36 ........A......G.............. AGAACTCTACAACTAACAGTATATTTTCTACAATTC 524027 30 96.7 36 ................G............. AATTTATAACTTTGATACTCAACCATGTGCATAAAT 523961 30 80.0 0 ...............G.....CGC....GC | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 91.4 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : ACGATGGAACAGGTTGGGTCGATTGTCTCCGTTGTCGTAAGATACTAAGAGCCTAGATAAAAGAAAAAAGATTATTTAAACAAAAAGAACCCCAATAAATAGAGTTCTTTTTTGTATGAGATTTTCTATATATTGGTGCTATGTTTTGGTCTATTTTTATTATATCCAATACATGGATATTTTAATCAAAGCTTTTCTATTTACCTAAAATATGTTAGGTTAAAACAGTATTGGATATAGAAGAAATTAAATAAATTTGTAAATAAAAACTCTAGATTATTTCTAGAGTTTTTTATAATATAGGAAATTAAAAATAATAATTGGATATAATAGTAAATAAAAAGAAGAGCAATATTCTATCATTCTTCTTTTGACGTCAAAAATACGTCAAAAATTATATTCTATTTTTGACGTATTTTATCTATAATAAAATTTATTAGAATACTTATAAAGCTAGTAATTAAGCAGTTTTGTCTTATAAATTACTTTTATTTTTTATA # Right flank : AGAGAACCCAAAGTTGCAATTTGGAGTGATTTGTTTACTTCTTGCAGGGGAGAAGTAGGAGCTTCATTAATTTAATTTTTCAAGGTATAATAAATTTATAAACCTATTTTAGACATTGAAATATAAGGATTAGAATAGGACTTTATTTTGTATTTACAAAAAAGCAAAATCACTTGGAAAACTTTCTGCAAAACCTTGCAAAATCAATGGGTGTATGATATTCTTTAAAATAAGGAATGGCTATTTTACTATGATTGAACAGTAACATAGGATGTATTTAAATAGTTGTAATTGCAATAACAGCATAGCTGTAGCTCGTTGAATAGTAACATGAGATGTATTTAAATGCGACAGTTCTGTTATATTGTTCTTCTGCAGCTTGATTGAACAATAACATGAGATCTATTTAAGTAGGGAGCCCAAATCTCTGATTTGACGTGAGTCGCTTACTCCTTCGAGAATGAAAGAAGGAGTTTCATTAATGAAGTATAGCTTATATC # Questionable array : NO Score: 3.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 579842-580061 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBEF010000001.1 Clostridium botulinum strain DFPST003 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 579842 29 100.0 34 ............................. CTAAATAGTCTGGAACAACAATATAATGAATTAA 579905 29 100.0 35 ............................. TTCCTTATTGATTCAAAGATGCTTCTTTGTTTCTG 579969 29 96.6 35 ....G........................ CAAACAAAAACATTTAAGGAATGTTTTCTAACAAA 580033 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= =================================== ================== 4 29 98.3 35 ATTTAAATACATCTCATGTTAATGTTCAA # Left flank : AGTTTCTATTTTATCTATAAATTCTTTACTTAATCCCCTAATATTAAAAATATACAACCTATCTTTTTTATAAAATTTATCTCTTTCTATAGGATAAAAACTATTAAACACATAATTTTTATACTGTTTCTTTGGATGTATTTTTTTTAAATCGTTATCCAAAAGCATACTTTTATTTATGTTTTTCCCTATTATATATCCACAATCTTCAAAATATATGTCTTTTTTTAACATTACTGTTGCAATCAGTTCCCAAAATTCCATTTATACACCTCTTTATACAAATTTATCTATATTATACCATACACCCTTTAGTTAATATAACTGATTATTCTACTTATATTTTAAAAATATTATTATTTTTATTAATAATAAGTTAATTACTCATCATATTCCATTCTAAAACTTCGCATAAAATAAAAGCCTTAGATTATTCTAAGACTTTTAATGATTCTTATTATTCAACATATGGCTAATACTTTAGAAAATGTATTAAATAC # Right flank : ACCATAGTAAAATAGCCATTCCTTATTTTTAAGAATATCATACAACCATTAATTTCACAAGATTTTAAAGAAAGTTTTCCAAGTAGTTTTGCTTTTTTACAAATATAAAATAAAAACCTACCATAAGCCTTATATGTCAACGCTCAAAATAGGTTTTAAAATTTATTTTGGCTGGAAAAATTCAGTTAGTAGAACTCCTTCTCGCTTCCTCAAATGAGTAAGTACCTCACACTAAATCTCAGATTTATATTTACTACTTAAATACATCTAACTTTACAATATAATTGGATTGCCCAATAAAAAATCGCAAATTCAATCTCTTGAATAATGCGATTTTTTACGTTTATTATTATAGTAAAATAGTTCCCTTTGCCAAAATAGCTACCTCTCCAGACACTAGTATTTCTTTTTCAGAAATGCTCATAGAAACCTTAATTTTACTAGGTCTGCCGACAAATCTTCCTTGATTTATTATAATCTCATGACCTACATTAAAAATA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATGTTCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //