Array 1 235-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALYV01000002.1 Streptococcus mutans B24Sm2 contig_62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 234 36 100.0 30 .................................... GTTCCTTTGGAACAAACGCTTGCCCGTTTG 168 36 100.0 30 .................................... TCCAGCTATGAGCCATCTAATTCCCCCCCT 102 36 100.0 30 .................................... TGTCAATGCCAGAGCCAGAGCTTGCCTTTT 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : CA # Right flank : C # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 4-237 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALYV01000001.1 Streptococcus mutans B24Sm2 contig_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 .................................... GAAATATAGCAAACAAATTTCAAAGAATGT 70 36 100.0 30 .................................... CCAGCAGAAATTACGTAACCAGTTAAATCA 136 36 100.0 30 .................................... TCATTTTGTTTAATGGTCTTACCAAACCAC 202 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : CACG # Right flank : | # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 432-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALYV01000020.1 Streptococcus mutans B24Sm2 contig_263, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 431 36 100.0 30 .................................... AAATACGCTGGCAAAGCCTTTCCCAACCTC 365 36 100.0 30 .................................... GGCACAGTATAGTGTTAAAGCTAATGATAA 299 36 100.0 29 .................................... CTTTTTACATATATATTATATACTATGGT 234 36 100.0 30 .................................... TACGACATATGTAATGCGTACATACGGTTG 168 36 100.0 30 .................................... CATAGACAAATGAAAGTAAAGAGCCTGGCT 102 36 100.0 30 .................................... GAGTGGTCACCGTTGTGCCAATATCATTTT 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TCTTAAAGAATATGGATGATTATTTAACTTATACGTCATTTGTTTTGGCATGTCAAAAGTTAGAAGAATTATGTGCAAAGTTCCCTTATTTCCAAGTAATTATTTTTCCTTCTAATGAAGGATATTTATACGCTAGACAAAATAATATTGAGTATATAAATATTATTTCAGATTATGTAGCACATTATTATCAGTTTGATTTCTTATTTAATAGATTTGTTGAACAATACCCTACGAATCAAATTCCAACGCAAACTGATTTTTTGTCTTCAATTCAAAAAATTAGTGGTTATTTGTTTAGTAAAGAAATAGAATATGTGAGCCTCTCGAATAAAGACTTAGTTACTATTAAAATTTTAAATAGTCTTTACCAATATGATAAAAAAATAAATTATCCAATTCTAAATTCAAATTCTCTTGAAATTAAATTTTTAAGAAATAATAGTTGATTTTATGGTATAATCATTTTGAAGTACAAAAATCAAAAATGACAATTTGAG # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1417-1249 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALYV01000024.1 Streptococcus mutans B24Sm2 contig_267, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1416 36 100.0 30 .................................... TAGCTCGCTGTCATATAAGCTGAACTCTCT 1350 36 100.0 30 .................................... AGCGTTTATGGATGTAATTGCTAGCGCAGG 1284 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TT # Right flank : GACCGCACAGCTGGCCAGCTTATCCAAGAGGTTTTTGAATCGGTTACACTAAACTAGACAGAATCTATAAAGTGTTCTACACTAAAGAAAAGAGGAGAACAGATATGTCTAGAAAAATTCGCCGTCATTTCACAGATGAGTTTAAACAACAAATTGTTGACCTTCACAATGCAGGTATGAAGCGAAGCGAGATTATCAAAGAGTATGACTTGACCCCGTCTAGCTTTGACAAGTGGGTTAAACAAGCAAGAACAACTGGTTCCTTCAAAACTGTTGATAATCTGACAGATGAACAGCGTGAGCTGATGGAACTCAGAAAACGAAATAAAGAGCTTGAAATGCAGGTTGATATCCTAAAGCAAGCGGCGGTGATTATGGCACGAAAAGGGAAATAATCACCGCTAACAAGGACAAATACAGCATTTCAGCCATGTGTAGATGTTTAACTATTCCGCGTTCCAGCTATTACTACAAAGCTGTAGAGCCAGTATCTGAGGCAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1258-1425 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALYV01000028.1 Streptococcus mutans B24Sm2 contig_271, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1258 36 100.0 30 .................................... TTCTATAAGTGTAATAACTGCCAGCTAGCG 1324 36 100.0 30 .................................... TGGTCTGCATAGCTCGTGTCGTTCTGTGTG 1390 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGCTTACGTTTGCTTGATCATTGACCTCTTCAACCGTGAAATCATTGGCCTAGCCCTTGGTTGGCACAAGACCGCCGACTTGGTCAAAGAAGCCATTCAAAGCATCCCTTACGCTCTGACCAAGGTCAAACTCTTCCATTCTGATCGTGGTAAGGAGTTTGATAACCAGCTGATAGATGAGATGTTAGAAGCCTTTGGCATCACCCGTTCGCTGAGTCAAGCGGGTTGTCCTTATGATAATGCGGTAGCTGAGAGCACCTATCGCTCCTTTAAGCTTGAGTTTATCAACCAAGAAACCTTCCACTCTCTGGAAGAATTAACCCTTAAAACCAAGGATTATGTCCGCTGGTGGAATCACCATCGCATCCACGGCAGTCTCAATTACCAAACACCAATGACTAGGCGAGTCATTGCTTAATAAAAACACTTTATAAATTTTGTACAGAAAAGTGTTGCCTTTTCAGTACAACTGATTAGCAGTTTTGGCGGAAGCAAGAATG # Right flank : AA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 234-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALYV01000042.1 Streptococcus mutans B24Sm2 contig_286, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 233 36 94.4 30 CA.................................. CTATCAATCATAAGCTGTCCTGTCCGTATC 167 36 100.0 30 .................................... CGTTTTGGTTCAAAGCGCAGAGCCTAAGAA 101 36 100.0 30 .................................... ATTAGGAGTTGCTATCAAGCAGACGGCTTA 35 35 97.2 0 ...................................- | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TGTGACAGACTTGACTTATGTCCGTATTGGTAAGCGTTGGGCTTACGTTTGCTTGATCATTGACCTCTTCAACCGTGAAATCATTGGCCTAGCCCTTGGTTGGCACAAGACCGCCGACTTGGTCAAAGAAGCCATTCAAAGCATCCCTTACGCTCTGACCAAGGTCAAACTCTTCCATTCTGATCGTGGTAAGGAGTTTGATAACCAGCTGATAGATGAGATGTTAGAAGCCTTTGGCATCACCCGTTCGCTGAGTCAAGCGGGTTGTCCTTATGATAATGCGGTAGCTGAGAGCACCTATCGCTCCTTTAAGCTTGAGTTTATCAACCAAGAAACCTTCCACTCTCTGGAAGAATTAACCCTTAAAACCAAGGATTATGTCCGCTGGTGGAATCACCATCGCATCCACGGCAGTCTCAATTACCAAACACCAATGACTAGGCGAGTCATTGCTTAATAAAAACACTTTATAAATTTTGTACAGAAAAGTGTTGCCTTTT # Right flank : A # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.73%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 9868-9304 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALYV01000063.1 Streptococcus mutans B24Sm2 contig_311, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 9867 36 100.0 30 .................................... TTAAACACGAGTTTTCCACTTATGCCAATT 9801 36 100.0 30 .................................... CATACACTTCAACAGGTGATAAGTAACACA 9735 36 100.0 30 .................................... TTTTGGTTCATTAACATTTCCAAAGTCTTT 9669 36 100.0 30 .................................... AAAAATGGTTGATGTCCGTATTGAACATAG 9603 36 100.0 30 .................................... CCTATGACAAAAGCTATTACCGATATGGCA 9537 36 100.0 30 .................................... AACCTTGTCGGGAGCCTGCGAGCCGTTGTT 9471 36 100.0 30 .................................... CAGTAACAGCGCTGGCGGTACTGCTGACTG 9405 36 100.0 30 .................................... AAGCCATCTGACCTAAAGAATTAATTCTAA 9339 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TT # Right flank : TAATATAGTGAGCTCCAACGAAGAAAATAAGGTGGTACGCAGGGAGAAGATTTAGAAGAAGCCATGAAGAATGCCCGCCAAATGTTGGAGAGCATACTGGCATCTTACTTAGATGAGGGAATGGACTTACCCCAGCCGAGTGATATTAGAAAGCTATCAGCTAAAGATGGCTTTGTTACTATGATTCAGGCCGATCCCAGTCCTTATCTTAGAAACAATAAAGCTATTCGGAAAAATGTGACGGTCCCTGAATGGCTGGTGCGATTGGCTGATCGTGACCAAGTGAATTATTCTGAAGTATTAACAAAAGCTTTGGAAAAGAAATTACAATTATAAGGTAAAAGGTGCCAGAAATGTTGATTTCTAGCGCTTTTTTAGGTATAATATAAATGATTAAAATATTTAAAAAAGAATCATTTCGAAGCTGAAATCTGGCTGAGATGAGTGGTGCGATTACGAAATCTTGAGACAAAAATTGGTCCACGAGGTTTTAGAGCTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //