Array 1 19730-21142 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGTJY010000101.1 Achromobacter sp. Marseille-Q0513 NODE_101_length_22370_cov_7.689671, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19730 28 100.0 32 ............................ AAGGTGATGGAACGCCGCCAAGAGCCGGCGCC 19790 28 100.0 32 ............................ AGTACAGCGACAGATTGTCGAACGTCGTCACA 19850 28 100.0 32 ............................ TGGAATCTCTTGGCCTGGGCGATTCGCTCAGC 19910 28 100.0 33 ............................ GCGTGGACACCTTCGAAAGCTCCAACGACGATT 19971 28 100.0 33 ............................ ATTGCGCAACCACACCTTCTGATACTCGAACAG 20032 28 100.0 32 ............................ GGCTCGATGTACGCGAGCATCTGCGCTACGTG 20092 28 100.0 32 ............................ AGGTCCGTGGCGCCCGCGTCGAATTCGAAGCG 20152 28 100.0 33 ............................ GCATTCGTCAGGAAGTGCGCAAGGACGCCGTGG 20213 28 100.0 32 ............................ AATCCGCTGAACGGCAGCTACATGTCCTCGCT 20273 28 100.0 32 ............................ AGCGAGAGCAGCATTGCGCGGCAGAAGTGGTG 20333 28 100.0 32 ............................ ATGAGCCGGGCCGTATTCGACGCCGAGGTCCG 20393 28 100.0 32 ............................ GACGCCGCCCGCAAGTTGGCGGTGACGAAGCT 20453 28 100.0 33 ............................ ACCGCGCAGGCCGGCCGCCATGCGCTTCTCCTG 20514 28 100.0 33 ............................ TGGGTTTGCAGGTCGATGGCCGTGAATTCGCCC 20575 28 100.0 32 ............................ TTGCGCCGGTCGAACGTCTCGCGCATCAGCAC 20635 28 100.0 32 ............................ AACACGGGGTTATATGCATAGGGGCGGATCAA 20695 28 100.0 32 ............................ TGAACCGCGCACGTTTACCCGCGTGCGCCCGT 20755 28 100.0 32 ............................ TGCATACGCAGGCCTTCGGCAATGCATGGGTC 20815 28 100.0 32 ............................ ATGCTCAGAATGTCCGGGTCGAAACGTCCGGT 20875 28 100.0 32 ............................ TGCTGGATCAGGTTGTCCAGCTGGACGAGGTT 20935 28 96.4 32 .......A.................... ACCTTGGGCACGTCGTAGCGTAGCGCTGCCCA 20995 28 96.4 32 ............A............... GCAGACATCCCGGCTGGGATGGATTACCCGTG 21055 28 92.9 32 ....T.......A............... AAACGTTGTTCCGCAAACGATCTGCCCTTGGT 21115 28 85.7 0 ............A........CA...C. | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : TGCCTTTCGGCGGTTCGCGTCAGTCGGGCTATGGCCGCGAGAAGGGGTTCGAGGCGCTGTATGGCTTCACCACGTTGAAGACTATCGCGATCAAGCACTGACGCGTTAGCGTGGTTTTTGTAGCAAGGCCGAGGCCGCGCCGGGTGCGCGGCCTCGGTTTTTTTGTTTTGGGGAGACATGCACGCCGACTCTTCATCGGCCTGTACGCGTCTTGGACTTTCGGGAGAGGGGGGCGCTATTTGTACGGGAGGCGGGCATGACTACGGGCCGGCACAGGCGGTCTTGGCCGGGGCGAGGGAGATTCCACAGTATTGGGGAAGACTGCCAGGCAGGGGCGTGGATCCTGATGTGGAAGGACTGCATGCGCCGAACCCTTTTTTTGTGGGATTTAACTGCACCATAAAAATCAAGGACTTACGGAATGGGTGAAAATTTGGGTGTTTGGAGCCCGGGAAGTGGTTTTTTCTTTAGAATCAAGCAGCTGTGGAGTTTGATGAACA # Right flank : AGTGAACGTTCCGACGGCCTGCTTCACCTGTGCCAATTCGCTACCATCCAGCCGTCGCCAGGGACATCACCCGGCCCGAAGCAAAATATCGGTTAACGTTGATGTTTTGTTTCACGGGCGCGCCGCGCCCCGCATCAGGATTCGTATGTTCACAGGCATAGTCCAAGGCACCGCGAAGATCGCCAAGATCGCCGATCGCGAGGGCCTGCGCACTTTCACGCTCGATTTCCCGCCGGGCTTTTGTACTGATCTGGCGGTGGGCGCCAGCGTGTCCACCGACGGGGTCTGCCTGACCGTGACCGAGCTGACGGGCCCGGACCAGGCCACCTTCGACGTCATGCTGCAAAGCCTGGCCATCACCACCCTGGGCGCCTACCAGGAAGGCGACCGCGCCAACGTCGAGCGCGCGGCCAAGGACGGCGCCGAGATTGGCGGGCATCCGCTGTCGGGGCATGTGGACTTCACGTCCGAAGTGGTGATGGTCAAGTCGTCGGACACGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1748-93 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGTJY010000144.1 Achromobacter sp. Marseille-Q0513 NODE_144_length_16040_cov_8.925055, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1747 28 100.0 32 ............................ GCTTGCCGCCCGGCGAGGACGGCGAGATCGTG 1687 28 100.0 32 ............................ AAAGGCCAGCCCGCAAAGGCCGCCCAGGCGCA 1627 28 100.0 32 ............................ TCCAACGCCGCATTGCGCACGTCCGTGATCCC 1567 28 100.0 32 ............................ ATAAATCTCACGCAACTGAGCTACGGCGTAGT 1507 28 100.0 32 ............................ CACGCCGATCCCCGCAAGATACGGCTTCCCGT 1447 28 100.0 33 ............................ GATCAGGCCCTGGCTTATACCAGCGCCAACAGC 1386 28 100.0 33 ............................ ACATCGACCCGCGCCGCGTCGCCAGAGACCTGT 1325 28 100.0 32 ............................ TCGAGCGAGTCGCCCAGATCCGGTTCACGAAC 1265 28 100.0 32 ............................ AACGCACAGGCGTTTTCGCAAGTCCAGCTCGA 1205 28 100.0 32 ............................ TCGATCAGGGAATCGTCCCAAGTTCCCGGATT 1145 28 100.0 32 ............................ CATTCGCGCGGCACCCATCCCAGGCGGGCGGA 1085 28 100.0 32 ............................ GTACCAGTGGATTGACTGTCGAAGAGAAGATC 1025 28 100.0 32 ............................ GAAAACTCCTGCTGAGGAATGTCGCGGTAGGC 965 28 100.0 32 ............................ TCGACGACGACGCGCTCAAAATGGAATGGACC 905 28 100.0 32 ............................ AATCCGCACGCAAGAAACGCGGCAACCGATGA 845 28 100.0 32 ............................ TCGATGCGCGCGGTCGAGCGGTTGGCGGTATC 785 28 100.0 32 ............................ GATCCGCGCGACGACCGCATCCCGATAGGGCC 725 28 100.0 33 ............................ CTGTCCGCGCAACCGGGCGCGCGCAAGGAGCAG 664 28 100.0 32 ............................ AATGAGCGATGGAGTCCCGCACGCGCAAGGTA 604 28 96.4 33 ...........T................ TTTCACTAGTTGACGCATGGTTATCACTCCGGT 543 28 100.0 33 ............................ GATCCATTTCCACGGACACATGGTCGCCATAAC 482 28 100.0 32 ............................ TATTCCGGCGGCTACCTGGCGCGAGTGCGCGC 422 28 100.0 32 ............................ GTGATCTGGCCTCTGATGTAATCCAAGATCTC 362 28 100.0 32 ............................ TTCGCGGCCTCGACAGCCTGCTTGTTGATTTG 302 28 100.0 32 ............................ TACAAGCTGAACACCACGAAGGGCAAACCACC 242 28 100.0 33 ............................ TCTGATGTGGTTGCGCCATCCGGGCGCGTCGGT 181 28 96.4 33 ....A....................... CAGCAACCGGTCCACGTCCTGCAAGATCCGTTG 120 28 89.3 0 ....A................CA..... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.4 32 GTTCGCTGCCGCACAGGCAGCTTAGAAA # Left flank : TGCGCTTCAGGGCCTGATGGCCCTGGCATGGCTGCAGGGCATGCGGGATCACGTCCGGCTGACCGACCTGGCACCCGCGCCATCCGGCGCGCCGCGCTACGTGGTGCAGCGCCGTCAGTTCAAGACCAGCGCGGAACGCCTGCGCCGCCGCCGCATGCGTCGCAAGGGAGAAACGGCGGACCAGGCAGCCGAAGCCATTCCCGATAGCGTCGAGCGCCAGGTCGAATTGCCCTTCGTCCGTCTGAACAGCGCCAGCACCAGGCAGCCGTTCTGCCTGTTCATTGCTCAGGAGCGCGGGGAGGAAGGCGGGGCCGGTAAAGGGTTCAATTCCTATGGCTTGAGCCAGGGCGGTACGGTGCCGTGGTTTTGAACCCTTTTTTTGGATGTGATTGGAAGGCCTGAAAAATCAATGAGTTAGGAATGCATCCGGAATTTGGGTGTTGGTGAGGTTTTGACTGTTGTTTCTTTAAAAATCAATGAGTTATTGGTTTTTGGCCATA # Right flank : AGTCCCAACATCAGCACGCTACGTCCACAAGCCAAATCGAGCGGCAATGCCGCTCGATCTCCCGGTAGCCGTTTCAACCCACCGCCTCCACTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 51-378 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGTJY010000554.1 Achromobacter sp. Marseille-Q0513 NODE_554_length_427_cov_1.051075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 51 28 100.0 32 ............................ AAGACGAGCAACGGCGGCTATCTGGCCGTGAC 111 28 100.0 32 ............................ ACCGACAGCTGCCGCAAGCGCCGCATCAAATG 171 28 100.0 32 ............................ GTCCCAACAGCAGTGTTCGCACCAGGGCATAC 231 28 100.0 32 ............................ CAATCGGCCCATACGTTGGCCCGGCTCATGAT 291 28 100.0 32 ............................ TGGGACATGGACGGCGCATTGCGACTATCTAC 351 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCGCTGCCGCATAGGCAGCTTAGAAA # Left flank : GCATAGGCAGCTTAGAAAAGTTCGTAGCTAACGGCGCTGTCTACCGCGTGG # Right flank : ACATACAAGGAAAAGGGGCGCTGGAACAACGACGTTCGCTGCCGCATAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 211-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGTJY010000695.1 Achromobacter sp. Marseille-Q0513 NODE_695_length_235_cov_1.700000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 210 28 100.0 32 ............................ AGAGCAGAGGACGGATTTCGCGTTGCCGAAGA 150 28 100.0 32 ............................ TCTACTGCCTTGGCGCGTATCGTATCGACCAT 90 28 100.0 32 ............................ AGCATCGCGCGGAAGCCGCGGCCCCCTTCCAT 30 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCGCTGCCGCATAGGCAGCTTAGAAA # Left flank : CGCGGAAGCCGCGGCCCCCTTCCA # Right flank : AAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.40,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //