Array 1 126035-123307 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQGU01000017.1 Pseudoalteromonas aliena SW19 contig017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 126034 28 100.0 32 ............................ GAATACACTGAGTTTCTAACCCTTACGTCAGA 125974 28 100.0 32 ............................ GTGAAAGCAATGCTGGGATAAGTTAAGGGTTG 125914 28 100.0 32 ............................ AACAGCCAACCCCGCCATAATGTCGTATCTCT 125854 28 100.0 32 ............................ TTCTACGTTAAAAACAATTATCCTTCAGGAAG 125794 28 100.0 32 ............................ TAAAAGAAAAAACCGCTCATAAGAGCGGTCAT 125734 28 100.0 32 ............................ ACTGGTGGTATGCCTGCAACTCTTTCTGGTTT 125674 28 100.0 32 ............................ TTGTTCTCGACAAGCTTTTGATAATGCCATTC 125614 28 100.0 32 ............................ TGCAAACGTCCACTTTTCAGCCGCTTTTAAAT 125554 28 100.0 32 ............................ AAACCTTACTTTTGATTGCCCAACAATGGATC 125494 28 100.0 32 ............................ TAATGGATGCATCTATCTATGTTAGACCCGAT 125434 28 100.0 32 ............................ CATAGACAACAACGCCTTCTCAGCCATGACAA 125374 28 100.0 32 ............................ TTTATTAAGTGAAGGTGACGCTATAGATTCTA 125314 28 100.0 32 ............................ TTTCATTGTTCTAGATGTTGGTAGATGTGAAT 125254 28 100.0 32 ............................ ACTTGTTAATTCAATTGCTTTTGTGAATTTAA 125194 28 100.0 32 ............................ TTTATCATTTGCAAGCACATTAACCGTCTCAC 125134 28 100.0 32 ............................ AATTGGCTAACGTTTAAAACCGACATGTTATT 125074 28 100.0 32 ............................ TTCTATAATTTCGTATATGTTGTCCATTTCCA 125014 28 100.0 32 ............................ TATTCTCGTTACAATTTCATCACACTGAGAAT 124954 28 100.0 32 ............................ TGTGGAAGATGGTTTTGGAAACATAACTTACT 124894 28 100.0 32 ............................ TTTACACTCTGAGCTGTTTGCAGTGCTTTGTA 124834 28 100.0 32 ............................ ACGGGGAGATAAACGCAACACTAGAATCACTT 124774 28 100.0 32 ............................ TGTCCACAAGTGATTTTAACTCAGCCCCATCA 124714 28 100.0 32 ............................ TTGAATATGCGTTTTGATTGCACCTTTGCCGC 124654 28 100.0 32 ............................ TTTTAATGCAGTGTCAAAACCAAAGATTGTGT 124594 28 100.0 32 ............................ TTGATGCGAGCATGTTTCAAGTTATAGAAACA 124534 28 100.0 32 ............................ TAACAATTTAGTGATGCAAAATGCCGATCAAG 124474 28 100.0 32 ............................ TCTGTTGTAGTGCTTCCTAGATCAGGGCCAAC 124414 28 100.0 32 ............................ TTTAAAACAATCATTGTGGTTATGTTTACCTA 124354 28 100.0 32 ............................ GAAAGTAGCTAGTTGAGCGGTTGTAAGTGGTG 124294 28 100.0 32 ............................ ACTTGATAATGTTAATTCACCAAAATATAAGC 124234 28 100.0 32 ............................ AGTTGACCATGAAGTTAAGAAGCATTTTAAAG 124174 28 100.0 32 ............................ TTTAATTAGTTTCGTTCGACACTGACCACAGA 124114 28 100.0 32 ............................ TTTTTTAGCTCTTGCTACTCCAGTTCCTGAGG 124054 28 96.4 32 A........................... ATTAGCGTCAGACTGACCGATCAAAGATACTT 123994 28 100.0 32 ............................ TTTTTCGTACATACGCGCCATTTTTCCATTTT 123934 28 100.0 32 ............................ TTTATCAACCGCTGTTTGGCCAATGAGGATTC 123874 28 100.0 32 ............................ TAATGATTTCTCTACCGGTGCTGACGTTGAAG 123814 28 100.0 32 ............................ TGATAGTTGCAACAAATTACCGTTATATTTGT 123754 28 100.0 32 ............................ AGTTGAACATTTTACTTTTGTGAGTAGCGCTT 123694 28 100.0 32 ............................ TTTATCCCTCAGGAAGTTCGAAACAGTGTTTT 123634 28 100.0 32 ............................ TGAAGCATATAAAGACTCTACAGAATCAACGG 123574 28 100.0 32 ............................ TTACTCGCTTGTTTTTAAAGATTGGAAGACAA 123514 28 100.0 32 ............................ TGACCTGCCTATCAGATATGCCTAATAGGTCA 123454 28 96.4 32 ...........T................ CGCAATAACGAGCGAGACGGGCTTTCCTGAAT 123394 28 100.0 32 ............................ AACTACGGTTACTTTTAGTTTGCTGACACCAA 123334 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================ ================== 46 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATAAAGTCCATTAAAGCAGTTCCTGCTAATGTGACCCATGCGGCTTTTATTAGGCAACATGTTAAAGGTGAAGCGCGTATAGAAAAAGACATGCTAAGCAAGGCAAAACGTTGGGCTGAAAAATCAGGACAACCGTTTGATGAATGTTTGAAGTCGCTTGAAAAAAGTAAACCCAAAGCGAATAACAATCTGCCTTTTATTTGGCTAGAAAGCCAAGAAACGAGACAGCGAGACTTGAATGCAAGTAGGAAATTCCCATTGTTCATTAAAAAAGTAGAAGTTACGGAACAACAAGTTGGTACATTTAATTGTTATGGTTTAAGCACAAATCATAACGATAAAGAAAAGCTAGTTAGTATTCCCCAGTTTTAACCTTTATTTTTGCTCTTTAAAAATTAGAAACTAAAACAATAAGTTACAGCAGCGCTAAAAAATTAGGTAAAAATAGATAATTTTACCTAATTGCCTGTTGTAACTTATTTTTTGCCTGATATTCTATT # Right flank : AATACTGAGCAGTGTCTTACGACACAGCTCAGTAAGAAAACCGTGACTGTATTACAGGATACCTTTACTTCTTAACCTTGTCTTTAAGAACGTAAATTTCGCCATCGAAACTGCCTTGGATAGTCAGGCCTTGTCCCGCTAACTCTTTGAGGTATTCAATATGATCCTCAGTGATATGCTGGCCTGGTACCAAAAGAGGAATGCCTGGCGGGTAAGGGGTAACTAAACCGGCGCAAATACGGTTGTTACTTTTAGCGATGGGCACAGATTCGCGCTCACCATAAAAAGCATCGCTTGGAATACACGCCAAGTCTATCGCTGGTAAGTTTTCTGGTAAGCGGGCTCTGCGCGTTGATGTTGATAACTTTACCTTACCGCTGTCGAGTTTTTTCAGCGCATTGTACAAACGAATTATTTTTGAACGCGTGCCGCCAAGGGTCAGCAAAACTAAAATAGTGCTGTGAGTGTATTTTTCTATTTCTAGACCAATTTCGTCCAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //