Array 1 38-1588 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXZ01000111.1 Campylobacter fetus subsp. testudinum strain wqj9 contig00118, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 38 30 100.0 36 .............................. TTTCTACGTTCCTGGATTCTTCTATTATTAAATTCC 104 30 100.0 37 .............................. TCTGTTGTGGCAAATTCAAACAAAGCCTTTCCGCTTC 171 30 100.0 37 .............................. ATCTTATAGCAACAAACGCGATTGATGAGGCGTATAA 238 30 100.0 36 .............................. AAAGCAAATAAGCACTCTAATTATGCTTAAATGGCA 304 30 100.0 36 .............................. AAAGCAAATAAGCACTCTAATTATGCTTAAATGGCA 370 30 100.0 36 .............................. CAAAAAGAGACTATCTCTGCTGATGTTTTTAAGATA 436 30 100.0 35 .............................. CTCATACCCCTATCTTTGTACAGTGGATTTGAAAA 501 30 100.0 36 .............................. AAAGCAAATAAGCACTCTAATTATGCTTAAATGGCA 567 30 100.0 36 .............................. ACGCCCTTTGAAGAGCGTAGCCTTTTTCATCAAATT 633 30 100.0 36 .............................. AATGCCAGCTTTTATGGACGCAAAAAATCTTCAAAG 699 30 100.0 37 .............................. AGTTTATCGATTTTACTATACTTATAGCTTTGTTCGG 766 30 100.0 37 .............................. ATATAAACTCATAAGCATAACACGTTAATAGGTTATC 833 30 100.0 36 .............................. GTTTTAAATTTCTTTTTAACACTCTCTTCAAAAAGT 899 30 100.0 36 .............................. TAAGCCATAACCTTTTTATCAAATTCGCTTGGCGCT 965 30 100.0 37 .............................. GAGATAACAGCAGGTTTTAAAGAAAAAGTACTAAAAA 1032 30 100.0 36 .............................. CTATCTAACTGCTCTTTAAGCTTTTGTTTTTCAAGT 1098 30 100.0 36 .............................. TCTAGAATCTCTACATTTATACTTTGTGTATCTTCG 1164 30 100.0 36 .............................. AATAGAAGCCTTAGGTGATTTGATATGTGAGGCTAT 1230 30 96.7 35 .....T........................ ATACTTTAGTAAAAAACTAAGTAGAAAAGATAGTG 1295 30 100.0 35 .............................. AGTTTGAGGGCTTAGTTCCATTTGAGTTTTAGGAG 1360 30 100.0 36 .............................. AAAAACTCCAGCGCTACCTCGCGAAATATAAATTTA 1426 30 96.7 36 ...............G.............. AATTCCGCGCAATATTTTCCAGAATGGTTAAGCCAT 1492 30 100.0 37 .............................. TGGTGTGTCCAGCTGGTCGGTCTCCTGCTGGTTGCCA 1559 30 96.7 0 ......................A....... | ========== ====== ====== ====== ============================== ===================================== ================== 24 30 99.6 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : ACATAGTAAAAAGAACCGAGCTTTAAAAAACGCAATCG # Right flank : CTTGTCGAACGCCTATTCTACCACTTCTAAATAACCAACTTGAAAATACACTTTATAAAAAAGCTGAAATTTATTAAACTATTTTTCGAATGGTAAATTAAAATAGTAAAAAATATAATTTTGAAAACTTAGGCAAGAGGTTATTTATATAAGATATATATAAGTATATATAGTATATAATAAAATAAAAAGGATAAACTATGAAAAGCTACTGCTTGAAGTTAGATGATGACACATTTGCACAATTAAATCAAATCGTAAAAAATAGCAAAACAACTATGGCTGAATTTATCAGAAATGCACTAGATCAAAAATTAAAAGAAACCAAAGGTTCGCTATCATACAGGCTAACTACGCTTAGTTACTGCGATAAAAAAGAGAGCGACGAGATACTAGATAGTCTAAAACATCTAAACGACGACGAGTTAAAGATAGCCAAAAAAGAAACCATAAACTTATGAAGCTAGAAATCAACTATACCAAAGTTTCTATAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 2378-446 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXZ01000154.1 Campylobacter fetus subsp. testudinum strain wqj9 contig00163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2377 30 100.0 35 .............................. TTTGGTAACTCCAAACGCTTCTAACGCCGTTATAT 2312 30 100.0 36 .............................. ATTTTGTGCAAAAAGGTTAAATAAGTTGCTAAAATC 2246 30 100.0 36 .............................. CAGGGTGATTATATAGCAAATATGAGAAACAATGAA 2180 30 100.0 35 .............................. GAATGTAGCAAGTAAAACAGGAGTTTTTAGTGGAA 2115 30 100.0 34 .............................. ACGGACAATAAAACCTATAATATCAGCGTTGCGC 2051 30 100.0 36 .............................. TCCCCGTTGTCGATTTCTGGGGTCATGCTCTCTCCG 1985 30 100.0 36 .............................. CCGGTTATTGCAAGGCTTAGAGGCACATCTTTTGCC 1919 30 100.0 36 .............................. TCTAAAGGCATGATAACTCTAACTAATATATCTTTT 1853 30 100.0 36 .............................. GCTATAGACTACTGTATAAAGGAGTTCCCTACTTCT 1787 30 100.0 36 .............................. TAGTCCAGGCAACCTTTTTTATAATACCCTGCGTAG 1721 30 100.0 36 .............................. AGTCGCTTTCTGTCATTTCCATTAATTTCTTTTCCA 1655 30 100.0 36 .............................. ATCAGCACGTGTTTAACTATTTGAGTGAGTGGATAA 1589 30 100.0 36 .............................. TTTACAAACTGCAGATTATCATTTAATCTTATATTT 1523 30 100.0 35 .............................. AGCTGATCGTATTTGAGTTGAATATTCTCGATGTT 1458 30 100.0 35 .............................. GTGTTAAATATATCTTCTAAGGATGTATCACTTCC 1393 30 100.0 35 .............................. TTTTGCAAAGGCTTTAGATCCACACTCACGCCACT 1328 30 100.0 36 .............................. CCTAATAGCCCTGTAAATAACCCTGCTGCGCTACTG 1262 30 100.0 36 .............................. ATAGCACACTTTATTATTTTTTTATGTGTGCTATTC 1196 30 100.0 36 .............................. AAACAATTTACTAGTCCCAAATTGGAGATACCGCAA 1130 30 100.0 35 .............................. ACTACAGGTACATTAGATATTTTTAAATCTAATGT 1065 30 100.0 36 .............................. TTTTATAAATTTCAGCTGCGAGGTCTAAATTTATCT 999 30 100.0 36 .............................. ATCAGCACGTGTTTAACTATTTGAGTGAGTGGATAA 933 30 100.0 35 .............................. CCCCTACGCCCTTGCGATGCCAAATATCAGCCTAC 868 30 100.0 33 .............................. ATCACATTTTAGATATATCAGAACTAGCAGTAA 805 30 100.0 36 .............................. AAGAAAATGAAGATTTTAAAATAGAGATTCTAGAGA 739 30 100.0 36 .............................. TAGGTAATCTTGAGCAACAACAAAGCGAGAAACTAG 673 30 100.0 36 .............................. AGGAGATAAAATGAGTAAGTTAAAAGAGCTAGGAGT 607 30 100.0 36 .............................. ACTTAACTCCGCAAAACAACGAAATAGCCTATAAAA 541 30 100.0 36 .............................. CAGGAACGCTTACAGTGGTAACAGAGCTTAGCGGCT 475 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 30 30 100.0 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : CAATAGTTTTTTAAATTTATTTCTTATTTCAATTTCTAATTAAATTTCTTTTTAAATTTAATTAGATGATGAGTTTATTAT # Right flank : CAATTTCTTTTTTAATGCAAATGAGATAGTGACTTGTTATAAGCCTAGCCAAAATAAAAAAGAGGCATTTGGTTACTTTAAAAATGCTTCAATATATGATAAAAAAGAGGTGATAAAATGGAAAATCGCAAATTTACTATAGAATTTTATGAAATAGAGTGGTTTATAGATCTTCAATCTCACATAGATAATGGCGATAGCCAATTAGATATAATTCGACCTATTACAAAGATAAGAGATAAAAGAATAGCTCGTATATTTGATATCTTTGCCCCGGAAACTGAATGCATAGATAAGGCAAAAGAGCATAAAGAATTCTATGAGATCTGCGATTTTGAAGTACCGCAAACTAATCATAAATTCACAGGTACTTTTATAGACGCTTTAGAATATATAAAAGATACCTTTAATCAAGTTTCAAAGACTGTTTAACATCATTTAAAACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 2489-1469 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXZ01000148.1 Campylobacter fetus subsp. testudinum strain wqj9 contig00157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2488 30 100.0 36 .............................. CTTATATTTATGGTCCTTTTTAGGGTGTTACTTCCA 2422 30 100.0 34 .............................. TTAGAAATAATTTGTATTTTCCCGTGGCTATTAT 2358 30 100.0 36 .............................. CTTATATTTATGGTCCTTTTTAGGGTGTTACTTCCA 2292 30 100.0 36 .............................. GGTATAGACCTAATATTTTAGTAGCAAACTCTAATA 2226 30 100.0 37 .............................. TTGTTAATTAGAAGTAGAATTTCATCGGTATGCTTCT 2159 30 100.0 37 .............................. ACGATTATGGCGTCTCTGATGTATCTTCTTATAGGAT 2092 30 96.7 36 ...............G.............. CTAGGGGAAAGGGATTTACTAAGCTCCTCGTCAAAT 2026 30 96.7 36 ...............G.............. ATCACATTTTTAGATATATCAGAACTAGAAGTAATG 1960 30 100.0 36 .............................. TAGGTTTCCCTCCTCGTTACCCTTGTTGTACTCCTG 1894 30 100.0 36 .............................. AATTTAGATTTTAATCCATAAGACGCTAGTAAATCT 1828 30 96.7 36 .............................T AACGAAAAAGAAGGAAGTTGGGCTGTGGGCATAAAA 1762 30 96.7 37 ...............G.............. CTCAGAAAAATTCTGTTGCTTCTAATTCTCAAAAGCT 1695 30 96.7 36 ...............G.............. AACGAAAAAGAAGGAAGTTGGGCTGTGGGCATAAAA 1629 30 100.0 35 .............................. ATAATTATTGAAGAATATTTTTGTTTTAGACTTCT 1564 30 100.0 36 .............................. CCCAAAGTTGCTACCAAAAATCCATAACCGATAGTA 1498 30 73.3 0 ..........A....AGC.C..A..A...T | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 97.3 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TAGTAATAATTTGTATTTTCCCGTGGCTATTA # Right flank : CACATAGAGCTCCAAAGCAGCAACATTCAAAACGCTAAAAATGTAAGTGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGCAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAGCAAAGATGAAGCAGTTAAGCACATAGACAAAACTGGCGTTGAGAGAGTTTGGAAAAAGAGCAATACACATATTTATGAAAAGCACGACACAGAGCCAAAGGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAAAATAACAAATATATAAACGCTTTCAGTGATAATGGGTATTTTATAGTTTTTAATGGCAATGAGATAGTGACTTGTTTTAAACATAAAGATGGTAATAAAGCTACTTTTAATTATTTCAAAAACGCTTCAATATA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : GTTTGCTAATGACAAGATTTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 962-14 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXZ01000176.1 Campylobacter fetus subsp. testudinum strain wqj9 contig00185, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 961 30 100.0 35 .............................. CGCGCAAACAACAGACCTTTAACTGCGTATTTAGA 896 30 100.0 35 .............................. TTATTTGAAACATATATTTTAAAAGTTTAAAATAA 831 30 100.0 35 .............................. TCTGTTACAAAGCCTACTTGCTTTAAGCCCTGGCT 766 30 100.0 35 .............................. AAGTAACTAGTATTTGCACTTAGCACGCCTTTAAA 701 30 100.0 36 .............................. TTAGGAACGCTATTTTTTTCCAGTTCTTTACTTTGT 635 30 100.0 36 .............................. TTTTATAAATTTCAGTTGCGAGGTCTAAATTTATCT 569 30 100.0 36 .............................. ATAAACTATCGTTTTAACCTTAAAGTGTCACGCTCT 503 30 96.7 36 ...............G.............. AAAGAATAATCTTCTAAAATAACATCGGCATTATCT 437 30 100.0 35 .............................. GTGAGGCGTTGGGGGCGTCCATATAATAATTAAAT 372 30 100.0 37 .............................. TCGATTTTTGACGAATGTGATCCAGACGGAGATGCGG 305 30 100.0 36 .............................. CGCAAATAATCGCTCATTTTCATCCTTTTCAAATTG 239 30 100.0 36 .............................. AAGAAATGCTCAAATAACTCGTACATTTCTTTTAAA 173 30 100.0 34 .............................. TTAGAAATAATTTGTATTTTCCCGTGGCTATTAT 109 30 100.0 36 .............................. CTTATATTTATGGTCCTTTTTAGGGTGTTACTTCCA 43 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 99.8 36 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TGATACATTTAGAATTATAAGATCGTCTGATCCTA # Right flank : CTTAGAAATAATTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //