Array 1 11184-12146 **** Predicted by CRISPRDetect 2.4 *** >NZ_APJX01000007.1 Desulfotignum phosphitoxidans DSM 13687 Dpo_7c, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 11184 32 100.0 34 ................................ GTCTTGCAAAATTCAGACGTTGAATGGAATCAGC 11250 32 100.0 34 ................................ GTCGAGGATCGATACAACCGGAATTTCTTTTCCT 11316 32 100.0 33 ................................ AGACATGGGGGCCGCTGGGCGTGAATGGCCTGC 11381 32 100.0 34 ................................ AAGAATTTCTGACCATGTTCGGCCAGGTGAAATA 11447 32 100.0 36 ................................ AAGCGAGTCTCCGACATTGCCCATGGCCCGCAAAAG 11515 32 100.0 35 ................................ TTGAGCATCGAGCGCCCGAAGGGATCCAGAAATAT 11582 32 100.0 34 ................................ TGCCATACTTGCCGGATTTAGCCCGGCCGAATTT 11648 32 100.0 36 ................................ CCTCAGCCACCGGCACCATTTCCGCTGCCTGCTCGT 11716 32 100.0 35 ................................ TACCAAGGAGACACAAATGGGAGAAATTGAAGAAC 11783 32 100.0 34 ................................ TTGGATTGAAAGGGGAGGAGGTTCTGAAAGTCCT 11849 32 100.0 35 ................................ CTGCTGTCCTGTTATCGGGCCTCTGGGTAGAATTG 11916 32 100.0 35 ................................ TGATTGATCTGCTGGTCAAGGCTGGATATCCTCAT 11983 32 100.0 34 ................................ GTGTTTAGCATTGGATGTGCAGTACTGATCGGAT 12049 32 100.0 34 ................................ TCGCCGTCAGAGTAAGAGTACCACTTCGGCGTGG 12115 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 100.0 35 GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC # Left flank : CAGTTATGATGTATCAATAGAAAAAAACGGCCAGAAAAGACTGAGGCGTGTGTCCAAAGCTTGTGCAAATTATGGCCAGCGGGTCCAATATTCAGTGTTCGAATGTATCGTTGATCCTGCTCAGTGGACAGTTCTGCGGCGGCAATTAATTGATGAAATCGATCACGAACTGGACAGTCTGAGGTTCTATTTTCTGGGATCCAACTGGCGGAGACGAATTGAGCATATTGGAGCAAAGCCGGCAATTGATATGGAGGGCCTGTTAATATTATAAAAAATGCGAACCGGTAGTTGTTTTTGAACAGTCTGAAGCTGTTCTTCATTATTGCTGACAAAATCATCAATAATGGAAAATTAGTTTCGCATATGGATAACTATTTGTTTTAATAACTAATATTTTTTGATGTGCATTTTGATTGATGGTAATCAGGTCTTAAAACAACAAAATCGCTCTTTGACAATTCGTTTTGATGTAAAAATAGATAGTTATGACAATAGCA # Right flank : CGCAGATTGGACGAAAGCCTGTTTGTACTCCGGAATGTCACTCCCCCCTTCAGACATCCCGGAAAATAAGAGCACTGGATTTGCCGCATTTGATTATTATCTGCATGAATGGGGGGGCGTGACAGCGTTCTTTGTGGACAGACCGGAAAAAATTGATTATCCGGACAAGTTGATTAACGGGGTGAAGTTTCATGCCAGATAGAATAGGGCGAAACCGGGCCGGCTCACAACCCGGCACGTGATATGTGGCACGATGGGGTGGCCCCCCCTCACATATCACGTGCCCATAATCATTATAAAGCGGTATTTCGGCCTGTGACGGGTGCCGAAAGCTGAGGGCCAGTGTTCTTAAATATCCCAGAGTGGGACGATGACCGGACCCGGCGGCGACTCCGGTGTCGACACAGTGGCCTGGCGGGGCCTCGCCCCCTTTGCGTGTGCCGGTTCCATAACCCAAATATTATTAAACAAACAGGAAGTCGTCAATGGCAAAATGGATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.80,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 374537-373490 **** Predicted by CRISPRDetect 2.4 *** >NZ_APJX01000003.1 Desulfotignum phosphitoxidans DSM 13687 Dpo_3c, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 374536 36 100.0 38 .................................... CATATGGGCAAACGTCTTGGGTATTCCCGCTTTTTTGG 374462 36 100.0 36 .................................... ACTTTGCCGGAAACTCGTTGTTTGATTTGAAACAGA 374390 36 100.0 36 .................................... TTCACCTTCCTTTATTTAATTGTGAATGCAACATCT 374318 36 100.0 36 .................................... TTGCTCTTACAATAGTGTTAGCTGGATTTTTTGTAA 374246 36 100.0 39 .................................... ACAAACAGATCACCATAACAGTTTTCTTTGATCGTTACG 374171 36 100.0 36 .................................... GGAAATTTGCCTGCTGGCAAGTCATGTTCCACATTG 374099 36 100.0 35 .................................... TGATAGGACCCATGCCAAGGCCCTTTCTGTTGTTG 374028 36 100.0 36 .................................... TTCCCCGTCATCGCCGTGCTGAACTTCCCACCGATC 373956 36 100.0 36 .................................... ATTTCAATCAGATCCCGGAGCGCATCATATTTTGAC 373884 36 100.0 34 .................................... TTACACTTCATAAAATAATCTCCTTTTATTATGT 373814 36 100.0 36 .................................... TCATCTTTTACCGCCTGGATCTCAGCTTCGGCGTGT 373742 36 100.0 36 .................................... TTTCTCACATTCCCGCACGGCACCACAACCGGCACT 373670 36 100.0 37 .................................... TCTTCAACCAGAACAGATTCACGAAGAATCCCGCTCT 373597 36 94.4 36 .........T.............T............ TTATCCGCCTCAGCAATTCCATTTACATACAGATCA 373525 36 91.7 0 ................................TA.T | ========== ====== ====== ====== ==================================== ======================================= ================== 15 36 99.1 36 GTCCGAATCACCGCCTCGATTAGAGAGGATTGAGAC # Left flank : GAAAGGCTATGGGACCCGGGTCCAGAAATCCGTGTTTGAGTGTGCGAACATGACGGAGCACAAATTCATGAAAATGAAATCCGATCTGGAAGATTTGATTGACCATGGAGAAGACACGATCCGGTATTATCCGTTGTGCCGGTCCTGTGTCCGAAATGTCGAATTCTCCGGTATCGGTATGCTGCCTTATGTCAAACCCTTTGCAGTTTTGTAACAAAAAGGGTATTCAGATCTTTGACAATTTGTTTTAAAAATTACAGACCTCCCCGGGTTTTAATGGGTTGCCATTGGATCCGATTGAATATTGAATAAATTCAAAGGATTATGGGATACGAATTATCCGGAGGTCTGTAATTTTAATATTTTAAATAATTTCAATGTATTATGGAACATCGGGCTTGAAAAAAGGTGTGAAAAAATTTCCCAAACCCCAAAATCGGCACAGGTCCGTAAAAATGGCCTTTGAGACCTTTGCCAATCAAGCGTTTCAGATACCCAGA # Right flank : TGAAACCTGCCGATGACTGACCGAAGGACGGTTAATCCAGGCAACCTGAAAAACAGGAGGTGTTTATGAAATTGTTAGAGTGGGAAGTATCGGAAGATTCTTATCAGGAGCAGATCAATATTCCAAAAGAGATCAGAGCTCTTGCCGGAGAAGAGGGGATTTCAACGGAGGTCAAACAAAGTGCAGCCGTTGAAATACTGAATCTGACCACAGGTGAGTCATATACGGGGCGGCTTGCCATCACAGGGACCCATCAACTTTATCTGCCCGTTGAGATTCAAAAAATGCTGGAAGGAGCCGGCCGGATAAGGATCCGGTTGATATGAGTGGTATGAAAGAGGGTGTCGTCAAAATTCCGATTTCAGAAATTTACCTGGATGAATCCATTTATCCCAGGGAAACGATTGATCACAGGCGCATTGCCGTTTTTGAAGAAAATCTCCGGGATGGATTTGAATTTGACCCCATCGAGGTACAGGTATGGCCGGATCCGGAAAATC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAATCACCGCCTCGATTAGAGAGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //