Array 1 76754-76120 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKJ01000001.1 Enterococcus caccae strain DSM 19114 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 76753 32 100.0 36 ................................ CCACGCTGCAATTTGAGCGTCTAGTGCTGCTTGGTC 76685 32 100.0 33 ................................ TCTCTTGGCTGCATCTGATAATTGCCCATAGCC 76620 32 100.0 35 ................................ ACAGACTGAAATAGAAAAAGGTCATAACTACCCTA 76553 32 100.0 35 ................................ CCTCTTGTTCGCTGTACTAGCTAAACCCATTTTAT 76486 32 100.0 35 ................................ CAAGATGATCTGCCATATCAGCAAAACCATTATTG 76419 32 100.0 35 ................................ TTGCACTGGTTGTTGAGCTTGTCCGCCCCAATCAT 76352 32 100.0 34 ................................ CGTACCCGTGAATATGGGCAAATATGCTTTTTAC 76286 32 100.0 36 ................................ AATTTCTGTTCTTGGGTTTAAGCTGTATAACTTTTG 76218 32 100.0 34 ................................ CTCCTCTGCTGGTACAGCCGTTTCTTTAATCTCA 76152 32 90.6 0 ..................A...A....C.... | A [76135] ========== ====== ====== ====== ================================ ==================================== ================== 10 32 99.1 35 GTCTCACTCTATTTGAGTGAGTGGATTGAAAT # Left flank : TACTAAATATGGAGATGGTGGTGCAGACATATTACCACTATTCCGTTTAAATAAGCGTCAGGGAAAAGCTTTACTGAAAGAACTAGGTTCACCAGCTGAATTATATACGAAAATCCCAACAGCTGATTTAGAAGATGACAAACCCTTAGTGGCAGATGAAGTAGCACTTGGGGTGACCTATGAAGATATTGATGATTATGTTGAAGGAAAAAAAGTATCGGATAAAGCCAAAGCAACAATTGAAGGCTGGTATAAAAAAACACAACACAAACGTCATATGCCAATTTCTATATTTGATGATTTTTGGAAATAAGGAATAAACGATTTAATTTGGTGCGAACCCCATGTGCCCATGAAATCACTGAGAGATCCGCACCAAAATAAGAGAGGAAAAAAGCTATATTCGGCTTTTTCCTCATTTTATTTTAATAATCATAAGGATTTACGTAGAAATTTAGTGATTATCAATGATTTATAATAGATAATCATCATTTTTCACA # Right flank : CACTTTTTAATCCGAGTGTTGTAGGCATTATTCTATATGAATTAGATTTTGAAATTTTGGCATCGTATAAAAAATATCAAATGAATGAAGGAAGACTAAACTTTTAGCCTTTCTTTTTTTGCTAAATTTGGAGTAAAGCATCTTCATTTTGTGCAAATGGTTAAAAAAAGTGTAAACTTAAACTAGTTATCTGAAATAATCGATAAATTACTCTACAATTAAGTTAATTAAAGCAAGAAAAAGGTGAACGAAAATATGAAAAAAATGTTTAGGAAAAAAAGAGATATTGATAACGAAGAATTTCTTTCATCTGAAGAAAAAATACGAACAATCAATACTAATGATATTCGGATCCCAGATAACGTCGTAGGATTGTCTGATCAGAAAGTACAACAATTATACGCAGAAGGAAAATATAATAAAGAAGTTGAAGATTTATCTAGAACAACAAAACAAATCATCTTAGATAATTCGTTGACGTTATTCAACTTTATCAATCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTATTTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: R [matched GTCTCACTCTATTTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 334095-332371 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKJ01000001.1 Enterococcus caccae strain DSM 19114 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 334094 33 100.0 33 ................................. TTGAAGAACTTGTTCAGGTAGTTCCTGAATCGA 334028 33 100.0 37 ................................. ATTTAAATCTAAAGCTACTGTTACCACTAGTGCAAAC 333958 33 100.0 35 ................................. ATGATGATAATTACGCAAGTTTTCAAGTTGGAGAA 333890 33 100.0 35 ................................. AATAATAATCAATTAACATTTTTTAATGATAGTTT 333822 33 100.0 34 ................................. TCAGCTTCTTTTTTCTCTTGTTGCTCTTTTTTTA 333755 33 100.0 35 ................................. ATAAAACCTGAGCCCATCATTTGAGGTCCACCTAA 333687 33 100.0 34 ................................. TAAGCATGTGGCGTTTATGAAGAAATAACTAAAT 333620 33 100.0 35 ................................. AAAAGAACATGCTACTATTATCGCAAATGATCTTT 333552 33 100.0 34 ................................. GTTCCTTTTTTGCTTGCTGCAGCGTGAGATCTCA 333485 33 100.0 34 ................................. GAATACAAGTCTTATTGTCTTAAAAAGAAAAGCC 333418 33 100.0 36 ................................. TTATGGATTCTTTACGTGCTGAATATCAATCCTTGG 333349 33 100.0 36 ................................. AAGATCGAGTTGAGCAGCTGTTGCTGGGTGGATAGC 333280 33 100.0 36 ................................. CTTTAGGATTTAACACGGATACAGGAAAAACGGTCT 333211 33 100.0 33 ................................. GGTCCTCGACATCTAAACTTAATACCAGCAACC 333145 33 100.0 35 ................................. GCCACAATAACTTTTCGGCATTCCCAAAGTAAACC 333077 33 100.0 34 ................................. ATTGATCCGATTAATGTAATCGTGATGTTTTCGC 333010 33 100.0 37 ................................. AGGATTTGCAGAATGTAGTAGAAGAACTGAAAGCAAC 332940 33 100.0 33 ................................. GCCTAAATTCGAATTCATCGTTAAACGTCCATC 332874 33 100.0 34 ................................. TTTTCCTGCTCCAACATTAGCTTTTAATACTTTG 332807 33 100.0 35 ................................. TATCTGTTTTTCGTTTTGGTCCATCTTGCTTGAGA 332739 33 100.0 35 ................................. AAGCCCCATATTAGCTAACATGGATATTTTCGACC 332671 33 100.0 34 ................................. CCCCCCGACGTTTCAATCATTAAGAGACAACCTC 332604 33 100.0 35 ................................. AAGCCCCATATTAGCTAACATGGATATTTTCGACC 332536 33 100.0 34 ................................. CCCCCCGACGTTTCAATCATTAAGAGACAACCTC 332469 33 100.0 34 ................................. TAATTGCGCCTTTTGCGACGGACTCTGAACCATC 332402 32 75.8 0 ......................AC-...TTTTA | ========== ====== ====== ====== ================================= ===================================== ================== 26 33 99.1 35 GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Left flank : CTGTTATTATGACGAATGCGGAAGCAGGGGAAAAAAATATGACAATCAGTGCAGTTCATGCTGGAAAAACATTTGTTGATATTTTAGGAAATAATCCAACAAAAGTGGTTTTAGATGAAACTGGAGGGGGAACATTTCCAGTGAATGGTGGAGGAGTCTCGGTGTATGTAAATGAAGAGATTGTGGAAAAATTAAATCGAGGACTTATGGATGAACGAGCTTAAAAATAAGGACTTTGTTGATTATTTGTTAGTAAGGTATCACTTAAATTAGTACGTGACTTTTGCAGAATAAGTATTTATACTAAATGTAATGGATTAAATGTTGAAAGAGATAATTTTGGTGCGACCCATAAGTGCACATGAAAATACTGAGGGATCCGCACCAAATTTAAGGGAAAATAAGGATGAAAACAGCTCTTTTTCTCATTGATTTCACATTTTACAGAATTATAGTGTGGAAAATCGACGAAATAGTAATGTTTTTGTTGCTTTTTCACG # Right flank : CTTACCGATTAATTCCATAAAGCTATATTTCTAATAAATCAGTTGCAATAAATTTCCGGTAAACGAAAAGGAAAGCTATTCCACAAAATTCCATCATTATTAAAGAATTTTCTTCCTATTTTTGGTATAATGTATAAGATTGAAAAAAGAGAGAGGACGTTGATGATGGCACAAGAAAACGCCTTGATCCAAGGTATGAATCCGAGACAAAAAGAAGCCGTTCTACATACTGAAGGGCCTTTATTAGTTATGGCAGGAGCAGGCAGTGGGAAGACAAGAGTATTAACGCATCGTATTGCCTATTTAATTGAAGAAAAAGATGTTAATCCATGGAATATTTTAGCGATCACATTTACCAATAAAGCCGCAAAAGAAATGAGAGAGCGGGTTGGCAAATTATTGGAAGTTGGCGGAAACGACGTTTGGGTATCCACATTTCACTCAATGTGTGTACGTATTTTACGACGAGATGTTGATCACATCGGCTATAATCGCAATTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: R [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 391643-390535 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKJ01000001.1 Enterococcus caccae strain DSM 19114 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 391642 33 100.0 33 ................................. TTGCTGCGGTAAACGTTCTAAATCTCGTTTCGA 391576 33 100.0 34 ................................. CTCTACGGTGAAAGAAACTTGTCAAATAAATATG 391509 33 100.0 35 ................................. AAACCATCAATGTCGTTATCTTGATTAAATTCATC 391441 33 100.0 33 ................................. AAAAGATTATATAACTAAAGATATTAGTATAAC 391375 33 100.0 33 ................................. TAGGATTATCCCAAGAATAGTAAATTTTATTAG 391309 33 100.0 34 ................................. TGGGAGAAATGTTGTAATAGGTAAAAATAACAAA 391242 33 100.0 35 ................................. AACACTGCTTACTGACGGATTAGAAGGCGCACCTA 391174 33 100.0 35 ................................. AAAGTCATTCAAAAAGTCAACCGATCGTTTGCAGT 391106 33 100.0 35 ................................. TTCCGTCAATGGCTTGTCTGGTGGAAACTCAATGA 391038 33 100.0 35 ................................. CAGACTATGTGAACGCAGCATTCCCAATTGAAGAA 390970 33 100.0 33 ................................. CCTACACAAATAAAGCTCACCATCTTTAAATAC 390904 33 100.0 34 ................................. ATTTGCTGAAGTCCCGTTGTGATTGTTTTGTCGA 390837 33 100.0 35 ................................. TATGTTTTTCACCAAGTTCAACAACTAAAGTTACT 390769 33 100.0 36 ................................. TACCATGCCTCAGTGGTCTTTTGCCTAGCTTGGAAA 390700 33 100.0 34 ................................. CGGTGCAAAGCTTAGCGGCGATGGTAAATCAGTA 390633 33 100.0 34 ................................. AAATAACTGATATACGGCAATTCCTTCGGTTTCT 390566 32 75.8 0 ......................AC-...TTTCA | ========== ====== ====== ====== ================================= ==================================== ================== 17 33 98.6 34 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : AACGTTTTGAGTTTCTACAAAAAATGAGGGTGAAAGAAGATCAACAATTATCACTTGATTTTGAAGAACCATCATTAGTTGCGGAAGAAAATCCAGAAATTTTTGAAAAATATACTAGTGTAGTTTGGCAAAAGCGAACCTTGGGAGAGGTAACCCATATTTTCAGTCATCTAAAATGGCATATTCTTGTGTTTTATGGCCGACAAACAGGTTTAACAGTTTTGGCTGAAAATCAAGAGTGGGCAACAAAAGACGAATTTTCCACCTATGTTTTTCCAAAACCTCAGCAAAAAATGTTAGAACTCTATAAAAAAGAATTTAAAACAGAAGAATAATTTTGGGTGCGAACTCTAAGTGCACATAAAAACCCTAGGAGATCCGCACCATAAATTTGAGGAATTAAGCGGAAAAAACCGCTTTTTCTCATTTTAATTTAATGTTATAATTAGCTTTAGTAGTGGAATAGCCGAAATATGTAATGTATTTCTACTAATTTCACG # Right flank : TTTCAAGCCCAATTTAAACATCAAAATTTCAAATTCAATCTAATAATTCAAATAGATTATTCCTTAGCACTATGAGAAATCAAACTCCTTAGTATGCAAAGTTGAAAATTATGATATAATTGTATTGATATCGGTGTAATGAACACCCAAAACGAAGCGCAATCAGCTTTGATACGCGATTTTTCGTACTAGGGAAAGTTGGGGGACTATGGCAATTCCAAAAGAAGGTGAATTTGTAACGATTCAAAGTTACAAACACGATGGGCATTTGCATCGAACATGGCGAGATACTATGGTATTAAAAACAAGTGAGTACTCTTTGATTGGCGTGAATGATCATACTTTGGTGACAGAGTCTGATGGACGTCGTTGGGTTACTCGTGAACCAGCGATTGTTTATTTCCATAAGAAATACTGGTTCAACATAATAGCAATGATTAGAGAAAAGGGGGTTTCTTATTACTGCAATCTAGCGTCACCGTATCTTTTAGATGATGAAG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 78597-79373 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXKJ01000015.1 Enterococcus caccae strain DSM 19114 Scaffold15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 78597 34 97.1 33 .................................T GGAAGCGCGTTTACAACCGTTTCGACGATTGGT 78664 34 97.1 34 .................................T CGCTGGTTTAAAAATGTTTAATTATTTAGAAAAT 78732 34 100.0 35 .................................. CCTTGGTATACTTTATCTATCAGCAAGTGGTCTGC 78801 34 100.0 32 .................................. AATTTAACAACTACGGTATCGTTAACTTTGAG 78867 34 97.1 33 .................................T ATTATTATGCTCACTGTTATTTTTATTATTACC 78934 34 100.0 33 .................................. AGTAACTATACAAACAAAACAAATTTTATAAAT 79001 34 100.0 34 .................................. AACAATTTTATAACGGTAGAAAAGACCTATAATA 79069 34 100.0 35 .................................. CGCTCAACACCAACAACCTATACAACTCTACAGCC 79138 34 97.1 33 .................................T ACCCTTTTAGCTAGACGTTTTTGGTCAAAATTA 79205 34 88.2 33 ..................TG........G....G CAGCAGTTCCGGCTTTCGTGCTTTTTGTTTTCG 79272 34 88.2 34 ....CA....T......................T GTGGGAGAGCTTTTTAAAACCAATAGCTGAATGG 79340 34 94.1 0 ................GA................ | ========== ====== ====== ====== ================================== =================================== ================== 12 34 96.6 34 GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA # Left flank : TTGTGGTTTAGCATAAATGAGAAAGTGGTGACACTGAATGTTGATATTAATAACCTACGATGTCGCAACAAGTTCAAAGAATGGTACTCGCCGTTTAAGGAAAGTAGCAAAGAAATGTCAAGATTATGGGCGACGTGTTCAGAATTCTGTTTTTGAGTGTATAGTTGATGCGACAGAATTGACGAAGCTGAAGAAAGAACTGAATGATTTAATTGATGAGGAAGTAGATAGTTTGCGCATTTATCGATTGGGTAATAATTATCAAAACAAAGTTGAACATATAGGTGCAAAAGAAAGCTTCGATATAGAGGGTCCTTTGATATTTTAGCATTAGTAATGTGGTGCGGACCTAAAGTGCACATGAAAACACTGAGGGACCCGCACCAATTTTTTACAATATTATGTTTTAAAACGTCTGTTTTCCTCATTGAAATTTAATTTTCATCGTTGTTTTTTTATGAAGTGATAACGATAGGTCATTTATTTTTGTCATTTTCACG # Right flank : AAGGATTACAACGCTGAAATTGTCTGTAAGACTGAGGACTAGCTATATATAAAGTTAATCTTAGATAAATGGGGACAGATCAAATGGAACTAAATCAAAGATAAAATACACAACAAATGAGAACGATTCTGTGTGTTGTGTAGAAAATTTTAAAGTTAGAGGAATTGGATTATATCACTGAAAAAGAAAAAAGCTCTTATAAAGAGCTTTTTTAGTTATAAGATAAAATCAAAAAAACGAAGAAAGTAAAAAAATAATAGCTAGAAAATAAATGAAAGATATTTTCATTTGTTTTTTATTTTAATCTTATTTGTTATCTTGTTATGTTAACAAATAAGAAAATATATATATAATTAAACCTACATGCCGATAATATAATGTTTTTTACGGTTTGTCAATACTGTTAGAAATAATTTTTTAAAAAATATTTATATCTTTAACTTTATATCTCGTTGTTTAATGGTGTTTTGGAACGGAATGTGTTCGCCGTCAAATCGCCG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //